ID: uc001fgh.1_intron_2_0_chr1_154965150_f
GENE: FLAD1(3)
chr1:154965100-154965427+


(1)
AGO2.ip 		(1)
AGO3.ip 		(5)
B-CELL 		(1)
BRAIN 		(5)
BREAST 		(14)
CELL-LINE 		(2)
CERVIX 		(4)
HEART 		(3)
HELA 		(1)
KIDNEY 		(5)
LIVER 		(1)
OTHER 		(1)
RRP40.ip 		(14)
SKIN 		(1)
XRN.ip

Sense strand
GAGCCATGGATGGGCCCCTTCCCAGGACAGCAGGGGTAGAAGTGGGAAAGGTGAGCATTTGTGACTATTCTATTACTCTGACCTCCCAGGACTGGACCTACAGAGACATCTGGGATTTTCTGCGTCAGCTGTTTGTCCCATACTGTATCCTGTATGACCGAGGGTAAGGGTATTAGGGGAAGGGAATGGGTAAGGGAGTTTTTAGGGTGCTGGGATAGGGAGGGCCAATAGGATCGCCCACCCTACCACATGCTTGCCCTCCACCCTCCCTGCTCCAGATACACATCACTGGGGAGTCGGGAGAATACCGTGCGGAACCCGGCCCTGA
...............................................................................................................................(((.((.(((..((((........))))))).)).)))...................................................................................................................................................................
....................................................................................................................117...............................................167...............................................................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR207110(GSM721072)
Nuclear RNA. (cell line)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR015360(GSM380325)
Plasma B cells (PC137). (B cell)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR189782SRR189784SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR033716(GSM497061)
Mentle Cell Lymphoma (MCL114). (B cell)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR033714(GSM497059)
Burkitt Lymphoma (BL134). (B cell)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		SRR040042(GSM532927)
G428N. (cervix)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR553575(SRX182781)
source: Kidney. (Kidney)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR207118(GSM721080)
RRP40 knockdown. (RRP40 cell line)		TAX577740(Rovira)
total RNA. (breast)		TAX577739(Rovira)
total RNA. (breast)		SRR040039(GSM532924)
G531T. (cervix)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191523(GSM715633)
107genomic small RNA (size selected RNA from . (breast)		SRR444052(SRX128900)
Sample 12cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)		GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM1105750AGO3(GSM1105750)
small RNA sequencing data. (ago3 hela)		SRR189786SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR038853(GSM458536)
MELB. (cell line)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191595(GSM715705)
72genomic small RNA (size selected RNA from t. (breast)
..................................................................................................................................................ATCCTGTATGACCGAGG.....................................................................................................................................................................17119.0019.0013.00-2.00--------1.00---1.00-------------1.00-----------------------1.00----
......................CAGGACAGCAGGGGTAGAAGTGGGAAAGAT....................................................................................................................................................................................................................................................................................304.000.00----4.00-----------------------------------------------------
...................................................................................................................................................TCCTGTATGACCGAGG.....................................................................................................................................................................1614.004.00--1.00----------------------------1.00----1.00--------1.00------------
.................................................................................................................................................TATCCTGTATGACCGAGG.....................................................................................................................................................................1814.004.00------------1.00------1.00-------------1.00-------1.00----------------
...................................................................................................................................................................GTAAGGGTATTAGGGGA....................................................................................................................................................1713.003.003.00---------------------------------------------------------
.........................................................................................................................GCGTCAGCTGTTTGTCCCATACTGT......................................................................................................................................................................................2512.002.00---------2.00------------------------------------------------
.....................................................................................................AGAGACATCTGGGATTTTC................................................................................................................................................................................................................1912.002.00------1.00------1.00--------------------------------------------
.........................................................................................................ACATCTGGGATTTTCTGCGC...........................................................................................................................................................................................................202.000.00--------2.00-------------------------------------------------
...........................................................................................................................................ATACTGTATCCTGTATGACCGAGG.....................................................................................................................................................................2412.002.00------------------------1.00--------------1.00------------------
...................................GTAGAAGTGGGAAAGGTGAGCAT..............................................................................................................................................................................................................................................................................2312.002.00----------2.00-----------------------------------------------
.......................................AAGTGGGAAAGGTGAGCATTTGTGAC.......................................................................................................................................................................................................................................................................2612.002.00-----------------2.00----------------------------------------
.........................................................................................................................GCGTCAGCTGTTTGTCCCATACTG.......................................................................................................................................................................................2412.002.00-----2.00----------------------------------------------------
........................................................................................GGACTGGACCTACAGAGACATCT.........................................................................................................................................................................................................................2312.002.00------2.00---------------------------------------------------
........................................................................TTACTCTGACCTCCCAG...............................................................................................................................................................................................................................................1712.002.00---2.00------------------------------------------------------
................................................................................................................................................GTATCCTGTATGACCGAGG.....................................................................................................................................................................1912.002.00------------1.00-----1.00---------------------------------------
...............................................................................................................GGGATTTTCTGCGTCAGCTGTTTG.................................................................................................................................................................................................2411.001.00-1.00--------------------------------------------------------
........................................AGTGGGAAAGGTGAGCATCGTG..........................................................................................................................................................................................................................................................................221.000.00---1.00------------------------------------------------------
....................................................................................................................TTTCTGCGTCAGCTGTTTGTCCCATACTGT......................................................................................................................................................................................3011.001.00----------------------------------------------1.00-----------
....................................................................................................................................................CCTGTATGACCGAGG.....................................................................................................................................................................1511.001.00--1.00-------------------------------------------------------
.............................................................................................................CTGGGATTTTCTGCGTCAGCTGTT...................................................................................................................................................................................................2411.001.00----------------------1.00-----------------------------------
................................................................................................................................CTGTTTGTCCCATACTGT......................................................................................................................................................................................1811.001.00-----------1.00----------------------------------------------
..............................................................................................................................................................................................................................................................................................CACTGGGGAGTCGGGAGA........................1811.001.00--------------1.00-------------------------------------------
..........................ACAGCAGGGGTAGAAGTG............................................................................................................................................................................................................................................................................................1811.001.00----------------------------------------------------1.00-----
..................................................................................................................................................ATCCTGTATGACCGAGGG....................................................................................................................................................................1811.001.00-------------------------------------------------1.00--------
....................................................................................................................................................................................................................................................................................................................CGTGCGGAACCCGGCCCTGA2011.001.00------------------------------------------------------1.00---
.........................................................................................................ACATCTGGGATTTTCTG..............................................................................................................................................................................................................1721.001.00-----0.50-0.50--------------------------------------------------
.........................................GTGGGAAAGGTGAGCATTTGAA.........................................................................................................................................................................................................................................................................221.000.00--------------1.00-------------------------------------------
.................................................................................................................................TGTTTGTCCCATACTGTAT....................................................................................................................................................................................1911.001.00------------------------------1.00---------------------------
.................................................................................................................................................................................................................................................................................................TGGGGAGTCGGGAGAATACCGTGCGGAACCC........3111.001.00----------------------------------1.00-----------------------
.......................AGGACAGCAGGGGTAGAAGTGGG..........................................................................................................................................................................................................................................................................................2311.001.00-------------------------1.00--------------------------------
.............................................................................................................................................................................................................................................................................................TCACTGGGGAGTCGGGAG.........................1811.001.00-----------------------1.00----------------------------------
.......................................................................................AGGACTGGACCTACAGAGACATCGGGA......................................................................................................................................................................................................................271.000.00---1.00------------------------------------------------------
.......................................................................................................................................TCCCATACTGTATCCTGCATG............................................................................................................................................................................211.000.00------------------------------------------------1.00---------
.......................AGGACAGCAGGGGTAGAAGTGGGAAAGGTGAGC................................................................................................................................................................................................................................................................................3311.001.00-------------------------------------1.00--------------------
...........................................................................................................................GTCAGCTGTTTGTCCCATACTGT......................................................................................................................................................................................2311.001.00----------------------------1.00-----------------------------
..................................................................................................................................................................................................................................................................................................................ACCGTGCGGAACCCGGCC....1811.001.00--------------------------1.00-------------------------------
..............................................................................................................................................CTGTATCCTGTATGACCGAGG.....................................................................................................................................................................2111.001.00--------------------------------1.00-------------------------
.....................................................................................................AGAGACATCTGGGATTTTCTG..............................................................................................................................................................................................................2111.001.00---------------------1.00------------------------------------
..............................................................................................................TGGGATTTTCTGCGTCAGC.......................................................................................................................................................................................................1911.001.00-----------------------------------1.00----------------------
..................................................................................CTCCCAGGACTGGACGAGT...................................................................................................................................................................................................................................191.000.00--------------------------------------------------1.00-------
...................................................................................TCCCAGGACTGGACCTACAGAGAC.............................................................................................................................................................................................................................2411.001.00-----------------------------------------------1.00----------
.........................................................................................GACTGGACCTACAGAGAC.............................................................................................................................................................................................................................1811.001.00---------------------------------------------------1.00------
............................................................................................................................................TACTGTATCCTGTATGACCGA.......................................................................................................................................................................2111.001.00---------------1.00------------------------------------------
..........................................................................................................................................................................................................................................................................................ACATCACTGGGGAGTCGG............................1811.001.00-------------1.00--------------------------------------------
..........................................................................................................CATCTGGGATTTTCTGCGTCAGC.......................................................................................................................................................................................................2311.001.00-1.00--------------------------------------------------------
..................................................................................CTCCCAGGACTGGACTGTT...................................................................................................................................................................................................................................191.000.00-----1.00----------------------------------------------------
..........................................................................................ACTGGACCTACAGAGACATCTG........................................................................................................................................................................................................................2211.001.00------------------------------------------1.00---------------
..................................................................................................................ATTTTCTGCGTCAGCTGTTTG.................................................................................................................................................................................................2111.001.00-------1.00--------------------------------------------------
...........................................................................................CTGGACCTACAGAGAC.............................................................................................................................................................................................................................1620.500.50------------------0.50---------------------------------------
......................................................................................................................................................................................................................ATAGGGAGGGCCAATAGGA...............................................................................................1920.500.50-------------------------------------------------------0.50--
..............................CAGGGGTAGAAGTGGGA.........................................................................................................................................................................................................................................................................................1740.250.25--------------------------------------------------------0.25-

Antisense strand
GAGCCATGGATGGGCCCCTTCCCAGGACAGCAGGGGTAGAAGTGGGAAAGGTGAGCATTTGTGACTATTCTATTACTCTGACCTCCCAGGACTGGACCTACAGAGACATCTGGGATTTTCTGCGTCAGCTGTTTGTCCCATACTGTATCCTGTATGACCGAGGGTAAGGGTATTAGGGGAAGGGAATGGGTAAGGGAGTTTTTAGGGTGCTGGGATAGGGAGGGCCAATAGGATCGCCCACCCTACCACATGCTTGCCCTCCACCCTCCCTGCTCCAGATACACATCACTGGGGAGTCGGGAGAATACCGTGCGGAACCCGGCCCTGA
...............................................................................................................................(((.((.(((..((((........))))))).)).)))...................................................................................................................................................................
....................................................................................................................117...............................................167...............................................................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR207110(GSM721072)
Nuclear RNA. (cell line)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR015360(GSM380325)
Plasma B cells (PC137). (B cell)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR189782SRR189784SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR033716(GSM497061)
Mentle Cell Lymphoma (MCL114). (B cell)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR033714(GSM497059)
Burkitt Lymphoma (BL134). (B cell)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		SRR040042(GSM532927)
G428N. (cervix)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR553575(SRX182781)
source: Kidney. (Kidney)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR207118(GSM721080)
RRP40 knockdown. (RRP40 cell line)		TAX577740(Rovira)
total RNA. (breast)		TAX577739(Rovira)
total RNA. (breast)		SRR040039(GSM532924)
G531T. (cervix)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191523(GSM715633)
107genomic small RNA (size selected RNA from . (breast)		SRR444052(SRX128900)
Sample 12cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)		GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM1105750AGO3(GSM1105750)
small RNA sequencing data. (ago3 hela)		SRR189786SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR038853(GSM458536)
MELB. (cell line)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191595(GSM715705)
72genomic small RNA (size selected RNA from t. (breast)
........................................................................................................................AGGATACAGTATGGGACAAACAGCTGACGCA................................................................................................................................................................................. 3112.002.00-2.00--------------------------------------------------------
......................................................................................................................................................................AGGGTATTAGGGGAAGGC................................................................................................................................................ 181.000.00---------------------------1.00------------------------------
.......................................................................................................GAAAATCCCAGATGTCT................................................................................................................................................................................................................ 1711.001.00-------------------------------------------1.00--------------
...............................................................................................................................................................................................................................................................GCCCTCCACCCTCCCTGCTG..................................................... 201.000.00--------------------------------------------1.00-------------
.........................................................................................CCAGATGTCTCTGTAGGTCCAGTC....................................................................................................................................................................................................................... 2411.001.00----------------1.00-----------------------------------------
...............................AGGGGTAGAAGTGGGAAA....................................................................................................................................................................................................................................................................................... 181.000.00--------------------------------------1.00-------------------
.............................................................................................................................................................................................................................................CCACCCTACCACATGCTA......................................................................... 181.000.00----------------------------------------1.00-----------------
.........................................................................................................................GCGTCAGCTGTTTGTCTCTC........................................................................................................................................................................................... 201.000.00-------1.00--------------------------------------------------
....................................................................................................................................................................................................................................................................................AGATACACATCACTGTTTA................................. 191.000.00--------------------1.00-------------------------------------
.............................CCTTTCCCACTTCTACCCCTGC..................................................................................................................................................................................................................................................................................... 2211.001.00----------------1.00-----------------------------------------
...................................................................................................................................................................................CCCTTACCCATTCCCTT.................................................................................................................................... 1730.330.33-------------------0.33--------------------------------------
.............GCTGTCCTGGGAAGGGGC......................................................................................................................................................................................................................................................................................................... 1840.250.25---------------------------------------------------------0.25