ID: uc001ffw.2_intron_0_0_chr1_154936408_r.5p
GENE: (11)
chr1:154937819-154938068-


(1)
AGO1.ip 		(1)
AGO1.ip OTHER.mut 		(1)
AGO2.ip 		(3)
B-CELL 		(1)
BRAIN 		(4)
BREAST 		(12)
CELL-LINE 		(2)
CERVIX 		(3)
HEART 		(2)
HELA 		(2)
LIVER 		(1)
OTHER 		(6)
SKIN 		(1)
UTERUS 		(1)
XRN.ip

Sense strand
TGCAGAGTGGGCAGCCTAAGCATTTGCTACTGGTGGACCCTGAGGGTGTGGTGAGTGTGGCAGAGGTGTGGGTGAGGGGTGGCAAAAAGGAAGGTACAGTACCCTACAGTGTATCCCTCTTCCTTCCCTCATTGCTTTGTAGACATTCCCGCTGGGCAGCTGTCTATGGGCCTCTCTTGCTCTTTAAAGTGTCTGGCATCTTCCTCCAGAGGCTCATCCCTTAGCCTGAACTATGTTCTTTATAGTCCTG
..............................................................((((...(((.(((((((.(((....((..((((...))))))....)))))))))).)))...))))..((((....(((((((((((.(((((....))))))))).................)))))))))))....................................................
..............................................................63..............................................................................................................................................207.........................................
SizePerfect hitTotal NormPerfect NormSRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR343333(GSM796036)
KSHV (HHV8). (cell line)		SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR040040(GSM532925)
G612N. (cervix)		SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)		SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR040028(GSM532913)
G026N. (cervix)		SRR191592(GSM715702)
59genomic small RNA (size selected RNA from t. (breast)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR033724(GSM497069)
L428 cell line (L428). (B cell)		SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)		SRR189782SRR033726(GSM497071)
Mututated CLL (CLLM633). (B cell)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR039636(GSM518473)
THP1_cyto_sRNAs. (cell line)		SRR444052(SRX128900)
Sample 12cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		TAX577579(Rovira)
total RNA. (breast)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577744(Rovira)
total RNA. (breast)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)
...................................................................GTGGGTGAGGGGTGGCTA.....................................................................................................................................................................18158.000.00138.0016.00-3.00---------------------1.00-----------
...................................................................GTGGGTGAGGGGTGGCTACC...................................................................................................................................................................2027.000.0027.00------------------------------------
...................................................................GTGGGTGAGGGGTGGCTAA....................................................................................................................................................................1920.000.0020.00------------------------------------
...................................................................GTGGGTGAGGGGTGGCTACA...................................................................................................................................................................2015.000.0015.00------------------------------------
...................................................................GTGGGTGAGGGGTGGCTAAC...................................................................................................................................................................2015.000.0015.00------------------------------------
...................................................................GTGGGTGAGGGGTGGCTAAA...................................................................................................................................................................2010.000.009.001.00-----------------------------------
...................................................................GTGGGTGAGGGGTGGCA......................................................................................................................................................................1767.507.505.502.00-----------------------------------
...................................................................GTGGGTGAGGGGTGGCTC.....................................................................................................................................................................187.000.006.001.00-----------------------------------
...................................................................GTGGGTGAGGGGTGGCTAC....................................................................................................................................................................197.000.003.004.00-----------------------------------
.......................................................................GTGAGGGGTGGCAAAAAA.................................................................................................................................................................1814.003.00----------1.00---1.00-----1.001.00---------------
.......................................................................GTGAGGGGTGGCAAAAA..................................................................................................................................................................1713.003.00----------------1.00--1.00--------1.00--------
...................GCATTTGCTACTGGTGGA.....................................................................................................................................................................................................................1813.003.00--3.00----------------------------------
.......................................................................GTGAGGGGTGGCAAAAAAAA...............................................................................................................................................................2013.003.00------------1.00-----1.00----1.00-------------
...................................................................GTGGGTGAGGGGTGGCTTCT...................................................................................................................................................................202.000.002.00------------------------------------
....................................................................TGGGTGAGGGGTGGCTACC...................................................................................................................................................................192.000.00-----2.00-------------------------------
...................................................................GTGGGTGAGGGGTGGCTTTA...................................................................................................................................................................202.000.002.00------------------------------------
........................................TGAGGGTGTGGTGAGTGTGGCA............................................................................................................................................................................................2212.002.00------2.00------------------------------
...................................................................GTGGGTGAGGGGTGGCTAGA...................................................................................................................................................................202.000.00---------2.00---------------------------
...................................................................GTGGGTGAGGGGTGGCAACC...................................................................................................................................................................2022.001.002.00------------------------------------
...................................................................GTGGGTGAGGGGTGGCGA.....................................................................................................................................................................181.000.001.00------------------------------------
..................................................................................................................................................................................GCTCTTTAAAGTGTCTGGCATCTTC...............................................2511.001.00------------------------1.00------------
...................................................................GTGGGTGAGGGGTGGCGTTA...................................................................................................................................................................201.000.001.00------------------------------------
...................................................................GTGGGTGAGGGGTGGCTGAA...................................................................................................................................................................201.000.00-----------1.00-------------------------
........................................TGAGGGTGTGGTGAGTCTAG..............................................................................................................................................................................................201.000.00----------------------1.00--------------
...................................................................GTGGGTGAGGGGTGGCAA.....................................................................................................................................................................1821.001.001.00------------------------------------
...........................................GGGTGTGGTGAGTGTCCT.............................................................................................................................................................................................181.000.00-------------1.00-----------------------
......................................CCTGAGGGTGTGGTGAGTGTGGCAGAGGTGT.....................................................................................................................................................................................3111.001.00-----------------------------1.00-------
......................................................................................................................................CTTTGTAGACATTCCCGCTGGGC.............................................................................................2311.001.00---------------------------1.00---------
...................................................................GTGGGTGAGGGGTGGCTGCA...................................................................................................................................................................201.000.00-----1.00-------------------------------
........................................................................TGAGGGGTGGCAAAAAAT................................................................................................................................................................181.000.00-----------------1.00-------------------
....................................ACCCTGAGGGTGTGGTTCGG..................................................................................................................................................................................................201.000.00-------1.00-----------------------------
...................................................................GTGGGTGAGGGGTGGCAAAAA..................................................................................................................................................................2111.001.001.00------------------------------------
......................TTTGCTACTGGTGGACCCTGAGGGTGGG........................................................................................................................................................................................................281.000.00--------------------------------1.00----
.....................ATTTGCTACTGGTGGACC...................................................................................................................................................................................................................1811.001.00-------1.00-----------------------------
...................................................................GTGGGTGAGGGGTGGCTTA....................................................................................................................................................................191.000.001.00------------------------------------
...................................................................GTGGGTGAGGGGTGGCAAC....................................................................................................................................................................1921.001.001.00------------------------------------
....................................................................TGGGTGAGGGGTGGCACC....................................................................................................................................................................181.000.00---1.00---------------------------------
........................................................................................................................................................................................................................TCCCTTAGCCTGAACTCTG...............191.000.00---------------1.00---------------------
.......................................................................GTGAGGGGTGGCAAAAAAA................................................................................................................................................................1911.003.00-------------------------------1.00-----
.................AAGCATTTGCTACTGGTGG......................................................................................................................................................................................................................1911.001.00--------1.00----------------------------
...................................................................GTGGGTGAGGGGTGGCAC.....................................................................................................................................................................1860.837.500.83------------------------------------
............................................................................................................................................................................................................TCCAGAGGCTCATCCCTT............................1820.500.50---------------------------------0.50---
....................................................................................................................................................................................TCTTTAAAGTGTCTGGC.....................................................1730.330.33----------------------------------0.33--
.....................................................................GGGTGAGGGGTGGCAAAA...................................................................................................................................................................1840.250.25-----------------------------------0.25-
.......................................................................GTGAGGGGTGGCAAAA...................................................................................................................................................................1640.250.25----------0.25--------------------------
...................................................................GTGGGTGAGGGGTGGCACCA...................................................................................................................................................................2060.177.50-----------0.17-------------------------

Antisense strand
TGCAGAGTGGGCAGCCTAAGCATTTGCTACTGGTGGACCCTGAGGGTGTGGTGAGTGTGGCAGAGGTGTGGGTGAGGGGTGGCAAAAAGGAAGGTACAGTACCCTACAGTGTATCCCTCTTCCTTCCCTCATTGCTTTGTAGACATTCCCGCTGGGCAGCTGTCTATGGGCCTCTCTTGCTCTTTAAAGTGTCTGGCATCTTCCTCCAGAGGCTCATCCCTTAGCCTGAACTATGTTCTTTATAGTCCTG
..............................................................((((...(((.(((((((.(((....((..((((...))))))....)))))))))).)))...))))..((((....(((((((((((.(((((....))))))))).................)))))))))))....................................................
..............................................................63..............................................................................................................................................207.........................................
SizePerfect hitTotal NormPerfect NormSRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR343333(GSM796036)
KSHV (HHV8). (cell line)		SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR040040(GSM532925)
G612N. (cervix)		SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)		SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR040028(GSM532913)
G026N. (cervix)		SRR191592(GSM715702)
59genomic small RNA (size selected RNA from t. (breast)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR033724(GSM497069)
L428 cell line (L428). (B cell)		SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)		SRR189782SRR033726(GSM497071)
Mututated CLL (CLLM633). (B cell)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR039636(GSM518473)
THP1_cyto_sRNAs. (cell line)		SRR444052(SRX128900)
Sample 12cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		TAX577579(Rovira)
total RNA. (breast)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577744(Rovira)
total RNA. (breast)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)
...............................................................................................................TATCCCTCTTCCTTCAAAT........................................................................................................................ 193.000.00----3.00--------------------------------
...........................................................................................................................................................................................AGTGTCTGGCATCTTGA.............................................. 171.000.00--------1.00----------------------------
..........................................AGGGTGTGGTGAGTGTA............................................................................................................................................................................................... 171.000.00--1.00----------------------------------
.................................................................................................................TCCCTCTTCCTTCCCTAGGC..................................................................................................................... 201.000.00------------------------------1.00------
.............................................................................................................GGGAAGGAAGAGGGATACA.......................................................................................................................... 1911.001.00--------------------------1.00----------
.............................................................................................................AAGGAAGAGGGATACA............................................................................................................................. 1660.170.17------------------------------------0.17