ID: uc001ffu.2_intron_0_0_chr1_154936408_r.5p
GENE: (1)
chr1:154937915-154938164-


(1)
AGO1.ip 		(1)
AGO1.ip OTHER.mut 		(1)
AGO2.ip 		(4)
B-CELL 		(1)
BRAIN 		(6)
BREAST 		(16)
CELL-LINE 		(4)
CERVIX 		(3)
HEART 		(3)
HELA 		(1)
KIDNEY 		(6)
LIVER 		(1)
OTHER 		(15)
SKIN 		(1)
TESTES 		(1)
UTERUS 		(1)
XRN.ip

Sense strand
TGAGCCGGCGGGAGGCTGAGGCACTGCTGCAGCTCAATGGGGACTTCCTGGTACGGGAGAGCACGACCACACCTGGCCAGTATGTGCTCACTGGCTTGCAGAGTGGGCAGCCTAAGCATTTGCTACTGGTGGACCCTGAGGGTGTGGTGAGTGTGGCAGAGGTGTGGGTGAGGGGTGGCAAAAAGGAAGGTACAGTACCCTACAGTGTATCCCTCTTCCTTCCCTCATTGCTTTGTAGACATTCCCGCTG
..............................................................................................................((((.((.((((((((((.((.((((...)))).)).))...)))))))).)).))))..................................................................................
..............................................................................................................111.......................................................................185...............................................................
SizePerfect hitTotal NormPerfect NormSRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR343333(GSM796036)
KSHV (HHV8). (cell line)		SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR553576(SRX182782)
source: Testis. (testes)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)		SRR189784SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		SRR040040(GSM532925)
G612N. (cervix)		SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		TAX577746(Rovira)
total RNA. (breast)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR553575(SRX182781)
source: Kidney. (Kidney)		SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)		SRR040028(GSM532913)
G026N. (cervix)		SRR191592(GSM715702)
59genomic small RNA (size selected RNA from t. (breast)		SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR033724(GSM497069)
L428 cell line (L428). (B cell)		SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)		SRR189782SRR033726(GSM497071)
Mututated CLL (CLLM633). (B cell)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR039636(GSM518473)
THP1_cyto_sRNAs. (cell line)		SRR040039(GSM532924)
G531T. (cervix)		SRR444052(SRX128900)
Sample 12cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)		TAX577579(Rovira)
total RNA. (breast)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577744(Rovira)
total RNA. (breast)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		TAX577738(Rovira)
total RNA. (breast)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR040008(GSM532893)
G727N. (cervix)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)		SRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
...................................................................................................................................................................GTGGGTGAGGGGTGGCTA.....................................................................18158.000.00138.0016.00-3.00-------------------------------------1.00----------------------
...................................................................................................................................................................GTGGGTGAGGGGTGGCTACC...................................................................2027.000.0027.00---------------------------------------------------------------
...................................................................................................................................................................GTGGGTGAGGGGTGGCTAA....................................................................1920.000.0020.00---------------------------------------------------------------
...................................................................................................................................................................GTGGGTGAGGGGTGGCTACA...................................................................2015.000.0015.00---------------------------------------------------------------
...................................................................................................................................................................GTGGGTGAGGGGTGGCTAAC...................................................................2015.000.0015.00---------------------------------------------------------------
...................................................................................................................................................................GTGGGTGAGGGGTGGCTAAA...................................................................2010.000.009.001.00--------------------------------------------------------------
...................................................................................................................................................................GTGGGTGAGGGGTGGCA......................................................................1767.507.505.502.00--------------------------------------------------------------
...................................................................................................................................................................GTGGGTGAGGGGTGGCTC.....................................................................187.000.006.001.00--------------------------------------------------------------
...................................................................................................................................................................GTGGGTGAGGGGTGGCTAC....................................................................197.000.003.004.00--------------------------------------------------------------
.......................................................................................................................................................................GTGAGGGGTGGCAAAAAA.................................................................1814.003.00--------------1.00------1.00--------------1.001.00--------------------------
.......................................................................................................................................................................GTGAGGGGTGGCAAAAA..................................................................1713.003.00-----1.00----------------1.00-------------------------1.00---------------
...................................................................................................................GCATTTGCTACTGGTGGA.....................................................................................................................1813.003.00--3.00-------------------------------------------------------------
.......................................................................................................................................................................GTGAGGGGTGGCAAAAAAAA...............................................................2013.003.00----------------1.00--------------1.00-------1.00------------------------
........CGGGAGGCTGAGGCACTCTG..............................................................................................................................................................................................................................203.000.00-------------------1.00------------------------1.00--1.00----------------
.....................................TGGGGACTTCCTGGTACGGGAGAGC............................................................................................................................................................................................2512.002.00------------2.00---------------------------------------------------
...................................................................................................................................................................GTGGGTGAGGGGTGGCTTCT...................................................................202.000.002.00---------------------------------------------------------------
....................................................................................................................................................................TGGGTGAGGGGTGGCTACC...................................................................192.000.00------2.00---------------------------------------------------------
.........GGGAGGCTGAGGCACTGCTGC............................................................................................................................................................................................................................2112.002.00-----2.00----------------------------------------------------------
...................................................................................................................................................................GTGGGTGAGGGGTGGCTTTA...................................................................202.000.002.00---------------------------------------------------------------
........................................................................................................................................TGAGGGTGTGGTGAGTGTGGCA............................................................................................2212.002.00-------2.00--------------------------------------------------------
...................................................................................................................................................................GTGGGTGAGGGGTGGCTAGA...................................................................202.000.00----------2.00-----------------------------------------------------
...................................................................................................................................................................GTGGGTGAGGGGTGGCAACC...................................................................2022.001.002.00---------------------------------------------------------------
...................................................................................................................................................................GTGGGTGAGGGGTGGCGA.....................................................................181.000.001.00---------------------------------------------------------------
...................................................TACGGGAGAGCACGACCACACCGGCC.............................................................................................................................................................................261.000.00-----------1.00----------------------------------------------------
........CGGGAGGCTGAGGCACTGC...............................................................................................................................................................................................................................1911.001.00--------------------------------------------------------1.00-------
..................AGGCACTGCTGCAGCTCAATGGGGACTT............................................................................................................................................................................................................2811.001.00--------------------------------1.00-------------------------------
...................................................................................................................................................................GTGGGTGAGGGGTGGCGTTA...................................................................201.000.001.00---------------------------------------------------------------
..............................................................ACGACCACACCTGGCCAGC.........................................................................................................................................................................191.000.00---------1.00------------------------------------------------------
...................................................................................................................................................................GTGGGTGAGGGGTGGCTGAA...................................................................201.000.00---------------1.00------------------------------------------------
...............................................CTGGTACGGGAGAGCACG.........................................................................................................................................................................................1811.001.00---------------------------------------------------------1.00------
........................................................................................................................................TGAGGGTGTGGTGAGTCTAG..............................................................................................201.000.00--------------------------------------1.00-------------------------
...................................AATGGGGACTTCCTGGTA.....................................................................................................................................................................................................1811.001.00-----------------------------1.00----------------------------------
.......GCGGGAGGCTGAGGCACTGCTG.............................................................................................................................................................................................................................2211.001.00-----------------------1.00----------------------------------------
...................GGCACTGCTGCAGCTCAATGG..................................................................................................................................................................................................................2111.001.00---------------------------------------------1.00------------------
...................................................................................................................................................................GTGGGTGAGGGGTGGCAA.....................................................................1821.001.001.00---------------------------------------------------------------
......................................................GGGAGAGCACGACCACACC.................................................................................................................................................................................1911.001.00---------------------------1.00------------------------------------
...............................................CTGGTACGGGAGAGCACGACC......................................................................................................................................................................................2111.001.00----------------------------1.00-----------------------------------
...........................................................................................................................................GGGTGTGGTGAGTGTCCT.............................................................................................181.000.00--------------------1.00-------------------------------------------
............................GCAGCTCAATGGGGACTTC...........................................................................................................................................................................................................1911.001.00----------------------------------------1.00-----------------------
.........GGGAGGCTGAGGCACTCTG..............................................................................................................................................................................................................................191.000.00-------------1.00--------------------------------------------------
..................................CAATGGGGACTTCCTGGTACGG..................................................................................................................................................................................................2211.001.00----------------------------------------------------1.00-----------
......................................................................................................................................CCTGAGGGTGTGGTGAGTGTGGCAGAGGTGT.....................................................................................3111.001.00-------------------------------------------------1.00--------------
....................................................ACGGGAGAGCACGACCACACCCGG..............................................................................................................................................................................241.000.00-----------1.00----------------------------------------------------
...................................................................................................................................................................GTGGGTGAGGGGTGGCTGCA...................................................................201.000.00------1.00---------------------------------------------------------
........................................................................................................................................................................TGAGGGGTGGCAAAAAAT................................................................181.000.00------------------------------1.00---------------------------------
....................................................................................................................................ACCCTGAGGGTGTGGTTCGG..................................................................................................201.000.00--------1.00-------------------------------------------------------
...................................................................................................................................................................GTGGGTGAGGGGTGGCAAAAA..................................................................2111.001.001.00---------------------------------------------------------------
.......GCGGGAGGCTGAGGCACTGCTGC............................................................................................................................................................................................................................2311.001.00------------------------1.00---------------------------------------
....CCGGCGGGAGGCTGAGGCACTGCTGCAGCT........................................................................................................................................................................................................................3011.001.00-----------------1.00----------------------------------------------
......................................................................................................................TTTGCTACTGGTGGACCCTGAGGGTGGG........................................................................................................281.000.00------------------------------------------------------1.00---------
...................................................................................................................................................................GTGGGTGAGGGGTGGCTTA....................................................................191.000.001.00---------------------------------------------------------------
.....................................................................................................................ATTTGCTACTGGTGGACC...................................................................................................................1811.001.00--------1.00-------------------------------------------------------
...................................................................................................................................................................GTGGGTGAGGGGTGGCAAC....................................................................1921.001.001.00---------------------------------------------------------------
....................................................................................................................................................................TGGGTGAGGGGTGGCACC....................................................................181.000.00---1.00------------------------------------------------------------
...............................................CTGGTACGGGAGAGCACGA........................................................................................................................................................................................1911.001.00-----------------------------------------------------1.00----------
...................................................TACGGGAGAGCACGACCACACCTGGCCA...........................................................................................................................................................................2811.001.00-------------------------1.00--------------------------------------
...GCCGGCGGGAGGCTGGGG.....................................................................................................................................................................................................................................181.000.00---------------------------------1.00------------------------------
..AGCCGGCGGGAGGCTGAGGCACTGCCGC............................................................................................................................................................................................................................281.000.00---------1.00------------------------------------------------------
..................................................................CCACACCTGGCCAGTATCCTG...................................................................................................................................................................211.000.00------------------1.00---------------------------------------------
.......................................GGGACTTCCTGGTACGGG.................................................................................................................................................................................................1811.001.00-1.00--------------------------------------------------------------
.......................................................................................................................................................................GTGAGGGGTGGCAAAAAAA................................................................1911.003.00---------------------------------------------------1.00------------
..................................CAATGGGGACTTCCTGGTACGGGA................................................................................................................................................................................................2411.001.00-----------------------------------1.00----------------------------
.................................................................................................................AAGCATTTGCTACTGGTGG......................................................................................................................1911.001.00----------------------------------1.00-----------------------------
...................................................................................................................................................................GTGGGTGAGGGGTGGCAC.....................................................................1860.837.500.83---------------------------------------------------------------
.............................................................................CAGTATGTGCTCACTGGCT..........................................................................................................................................................1920.500.50-----------------------------------------------------------0.50----
......GGCGGGAGGCTGAGGCAC..................................................................................................................................................................................................................................1820.500.50----------------------------------------------------------0.50-----
.....CGGCGGGAGGCTGAGGC....................................................................................................................................................................................................................................1740.500.50------------------------------------------------------------0.250.25--
.....................................................................................................................................................................GGGTGAGGGGTGGCAAAA...................................................................1840.250.25-------------0.25--------------------------------------------------
.......................................................................................................................................................................GTGAGGGGTGGCAAAA...................................................................1640.250.25--------------0.25-------------------------------------------------
...................................................................................................................................................................GTGGGTGAGGGGTGGCACCA...................................................................2060.177.50---------------0.17------------------------------------------------
............................................................................................GGCTTGCAGAGTGGGC..............................................................................................................................................1660.170.17---------------------------------------------------------------0.17

Antisense strand
TGAGCCGGCGGGAGGCTGAGGCACTGCTGCAGCTCAATGGGGACTTCCTGGTACGGGAGAGCACGACCACACCTGGCCAGTATGTGCTCACTGGCTTGCAGAGTGGGCAGCCTAAGCATTTGCTACTGGTGGACCCTGAGGGTGTGGTGAGTGTGGCAGAGGTGTGGGTGAGGGGTGGCAAAAAGGAAGGTACAGTACCCTACAGTGTATCCCTCTTCCTTCCCTCATTGCTTTGTAGACATTCCCGCTG
..............................................................................................................((((.((.((((((((((.((.((((...)))).)).))...)))))))).)).))))..................................................................................
..............................................................................................................111.......................................................................185...............................................................
SizePerfect hitTotal NormPerfect NormSRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR343333(GSM796036)
KSHV (HHV8). (cell line)		SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR553576(SRX182782)
source: Testis. (testes)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)		SRR189784SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		SRR040040(GSM532925)
G612N. (cervix)		SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		TAX577746(Rovira)
total RNA. (breast)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR553575(SRX182781)
source: Kidney. (Kidney)		SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)		SRR040028(GSM532913)
G026N. (cervix)		SRR191592(GSM715702)
59genomic small RNA (size selected RNA from t. (breast)		SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR033724(GSM497069)
L428 cell line (L428). (B cell)		SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)		SRR189782SRR033726(GSM497071)
Mututated CLL (CLLM633). (B cell)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR039636(GSM518473)
THP1_cyto_sRNAs. (cell line)		SRR040039(GSM532924)
G531T. (cervix)		SRR444052(SRX128900)
Sample 12cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)		TAX577579(Rovira)
total RNA. (breast)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577744(Rovira)
total RNA. (breast)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		TAX577738(Rovira)
total RNA. (breast)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR040008(GSM532893)
G727N. (cervix)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)		SRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
...............................................................................................................................................................................................................TATCCCTCTTCCTTCAAAT........................ 193.000.00----3.00-----------------------------------------------------------
..........................................................................................................................................AGGGTGTGGTGAGTGTA............................................................................................... 171.000.00--1.00-------------------------------------------------------------
.................................................................................................................................................................................................................TCCCTCTTCCTTCCCTAGGC..................... 201.000.00--------------------------------------------------1.00-------------
.....................CACTGCTGCAGCTCATAGC.................................................................................................................................................................................................................. 191.000.00-------------------------------------------------------1.00--------
....................................................GTCGTGCTCTCCCGT....................................................................................................................................................................................... 1511.001.00----------------------------------------------1.00-----------------
.............................................................................................................................................................................................................GGGAAGGAAGAGGGATACA.......................... 1911.001.00-------------------------------------------1.00--------------------
.........................................................................TGGCCAGTATGTGCTCAAA.............................................................................................................................................................. 191.000.00------------------------------------------1.00---------------------
...................GGCACTGCTGCAGCTCAGTTT.................................................................................................................................................................................................................. 211.000.00--------------------------1.00-------------------------------------
.............................................................................................................................................................................................................AAGGAAGAGGGATACA............................. 1660.170.17--------------------------------------------------------------0.17-