ID: uc001fff.1_intron_3_0_chr1_154524296_r
GENE: UBE2Q1(9)
chr1:154524246-154524446-


(1)
AGO2.ip 		(1)
AGO3.ip 		(3)
B-CELL 		(1)
BRAIN 		(6)
BREAST 		(23)
CELL-LINE 		(3)
CERVIX 		(1)
FIBROBLAST 		(2)
HEART 		(3)
HELA 		(1)
LIVER 		(2)
OTHER 		(1)
RRP40.ip 		(28)
SKIN 		(1)
TESTES 		(1)
XRN.ip

Sense strand
CCCTTTGACCCACCATTTGTCAGGGTTGTGTCTCCAGTCCTCTCTGGAGGGTGAGTGGCTGGCATGCGGAAGAGGGCATCTCCTCTGGCAGAGGGCGGGGAAGAGACTTGGAGATTTTGTCAGGCACAGCTGACTAACCTTTCTCATGCAGGTATGTTCTGGGCGGAGGGGCCATCTGCATGGAACTTCTCACCAAACAGG
.............................................................(((((.((.(((((..(((((((((.((.....)).))).........))))))...(((((......)))))...))))))))))))....................................................
..................................................51..................................................................................................151................................................
SizePerfect hitTotal NormPerfect NormSRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)		SRR189782SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		SRR037941(GSM510479)
293DroshaTN. (cell line)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330858(SRX091696)
tissue: skin psoriatic involveddisease state:. (skin)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		DRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR029125(GSM416754)
U2OS. (cell line)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM532876(GSM532876)
G547T. (cervix)		SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)		SRR330881(SRX091719)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR040010(GSM532895)
G529N. (cervix)		DRR000562(DRX000320)
Isolation of RNA following immunoprecipitatio. (ago3 cell line)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)		SRR363675(GSM830252)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)		SRR040025(GSM532910)
G613T. (cervix)		SRR015447(SRR015447)
nuclear small RNAs. (breast)		SRR037938(GSM510476)
293Red. (cell line)		SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)		SRR390723(GSM850202)
total small RNA. (cell line)		SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)		SRR553576(SRX182782)
source: Testis. (testes)		SRR191404(GSM715514)
47genomic small RNA (size selected RNA from t. (breast)		SRR029130(GSM416759)
DLD2. (cell line)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR033728(GSM497073)
MALT (MALT413). (B cell)		TAX577738(Rovira)
total RNA. (breast)		SRR033723(GSM497068)
L1236 cell line (L1236). (B cell)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		TAX577745(Rovira)
total RNA. (breast)		SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)		SRR191622(GSM715732)
175genomic small RNA (size selected RNA from . (breast)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR038852(GSM458535)
QF1160MB. (cell line)		SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)		SRR343335
.................................................................................................................................CTGACTAACCTTTCTCATGCAG..................................................22158.0058.0010.006.00----3.00-3.002.001.002.00-2.001.002.001.002.00-1.00-1.001.00-1.001.001.00--1.00-1.00-----1.00---1.00--1.00---1.001.001.00-1.00-1.00-1.00-1.00-1.00-1.00-1.00---1.00-1.00-----
.................................................................................................................................CTGACTAACCTTTCTCATGCAGA.................................................23122.0058.0014.00---------2.00---1.00---------------------------1.00----1.00---1.00--------------1.00------1.00--
.................................................................................................................................CTGACTAACCTTTCTCATGCAGAA................................................2417.0058.002.00------3.00--------------------------------------1.00--------------1.00--------------
.......ACCCACCATTTGTCAGGGTTG.............................................................................................................................................................................2114.004.00--4.00-------------------------------------------------------------------------
.................................................................................................................................CTGACTAACCTTTCTCATGCAGT.................................................2313.0058.001.00----------------------------------------------------------------1.00-----1.00----
................................................................................................................................GCTGACTAACCTTTCTCATGCAG..................................................2313.003.00---------1.00--------2.00---------------------------------------------------------
..................................................................................................GGAAGAGACTTGGAGATTTTGTCAGGCACA.........................................................................3013.003.00-----3.00----------------------------------------------------------------------
..................................................GTGAGTGGCTGGCATGCGGAAGAGGGCATCTCCTCTGGCAGAGGGCGGGGAAGAGACTTGGAGATTTTGTCAGGCACAGCTGACTAACCTTTCTCATGCAGT.................................................10212.002.00----2.00-----------------------------------------------------------------------
.................................................................................................................................CTGACTAACCTTTCTCATGCAGC.................................................2312.0058.002.00---------------------------------------------------------------------------
..................................................GTGAGTGGCTGGCATGCGGAAGAGGGCATCTCCTCTGGCAGAGGGCGGGGAAGAGACTTGGAGATTTTGTCAGGCACAGCTGACTAACCTTTCTCATGCA...................................................10012.002.00----2.00-----------------------------------------------------------------------
.........................................................................................................................................................ATGTTCTGGGCGGAGGGGCCATCCG.......................252.000.00---2.00------------------------------------------------------------------------
........................................................................................................................CAGGCACAGCTGACTAACCTTTCTCATGCAG..................................................3112.002.00------------1.00----------------------------------------------1.00----------------
..................................................GTGAGTGGCTGGCATGCGGAAGAGGGCATCTCCTCTGGCAGAGGGCGGGGAAGAGACTTGGAGATTTTGTCAGGCACAGCTGACTAACCTTTCTCATGCAG..................................................10112.002.00--------------------2.00-------------------------------------------------------
.................................................................................................................................CTGACTAACCTTTCTCATGCA...................................................2112.002.00-------------------1.00-----------------------1.00--------------------------------
..........................................................CTGGCATGCGGAAGAGC..............................................................................................................................171.000.00---------------------------------------------------------------------1.00------
.....................................................................................................................................CTAACCTTTCTCATGCAACTA...............................................211.000.00--1.00-------------------------------------------------------------------------
.................................................................................................................................CTGACTAACCTTTCTCATG.....................................................1911.001.00------------------------------------1.00---------------------------------------
..........................................................................................................................................................TGTTCTGGGCGGAGGGGCCATCCGC......................251.000.00---1.00------------------------------------------------------------------------
...................TCAGGGTTGTGTCTCAG.....................................................................................................................................................................171.000.00------------------------------------------------------------------------1.00---
.......ACCCACCATTTGTCAGGGGTG.............................................................................................................................................................................211.000.00--1.00-------------------------------------------------------------------------
.................................................................................................................................CTGACTAACCTTTCTCATGCAGAG................................................2411.0058.001.00---------------------------------------------------------------------------
................................................................................................................................GCTGACTAACCTTTCTCATGCAGA.................................................2411.003.00-------------------------------------------------------1.00--------------------
................................................................................................................................................................................TGCATGGAACTTCTCACCAAACAGGGC271.000.00-----------------------------------------------------1.00----------------------
...........................................................................................................................................................................CCATCTGCATGGAACTTCTCACCAAACAGGG311.000.00---------------------------------1.00------------------------------------------
.................................................................................................................................CTGACTAACCTTTCTCTCAG....................................................201.000.00---------------------1.00------------------------------------------------------
.........................................................................................................................................................ATGTTCTGGGCGGAGGGGCCATCTGCACGG..................301.000.00---1.00------------------------------------------------------------------------
......................................................................................................................................TAACCTTTCTCATGCAG..................................................1711.001.00------------1.00---------------------------------------------------------------
....................CAGGGTTGTGTCTCCTGGC..................................................................................................................................................................191.000.00----------------------------------1.00-----------------------------------------
.........................................................................................................................................................ATGTTCTGGGCGGAGGGGCCAT..........................2211.001.00---------------------------------------------------------------1.00------------
.................................................................................................................................CTGACTAACCTTTCTCATGTAG..................................................2211.001.001.00---------------------------------------------------------------------------
.........................................................................................................................AGGCACAGCTGACTAACCTTTCTCATGCAG..................................................3011.001.00---------------------------1.00------------------------------------------------
...........................................................................................................................................................GTTCTGGGCGGAGGGGCC............................1811.001.00----------------------------------------1.00-----------------------------------
.................................................................................................................................CTGACTAACCTTTCTCATGCAGAC................................................2411.0058.001.00---------------------------------------------------------------------------
.................................................................................................................................CTGACTAACCTTTCTCATGCGGA.................................................231.000.001.00---------------------------------------------------------------------------
..................................................................................................................................TGACTAACCTTTCTCATGCAG..................................................2111.001.00--------------------------------1.00-------------------------------------------
...............................................................................................CGGGGAAGAGACTTGAGA........................................................................................181.000.00---------------------------------------------1.00------------------------------
.............................................................................................................................ACAGCTGACTAACCTTTCTC........................................................2011.001.00----------------1.00-----------------------------------------------------------
.................................................................................................................................CTGACTAACCTTTCTCATGCAGAT................................................2411.0058.001.00---------------------------------------------------------------------------
........................................................................................................................CAGGCACAGCTGACTAACCTT............................................................2111.001.00----------------------1.00-----------------------------------------------------
...............TTTGTCAGGGTTGTGGG.........................................................................................................................................................................171.000.00--------------------------------------1.00-------------------------------------
.................................................................................................................................................................................GCATGGAACTTCTCACCAAACAGGGCTG281.000.00-----------------------1.00----------------------------------------------------
......................................................................................................................................................GGTATGTTCTGGGCGG...................................1611.001.00---------------------------------------1.00------------------------------------
................................................................................................................................GCTGACTAACCTTTCTCATGCAGAA................................................2511.003.001.00---------------------------------------------------------------------------
..............................................................................................................................CAGCTGACTAACCTTTCTCATGCAG..................................................2511.001.00------------------------------1.00---------------------------------------------
..................................................................................................................................................................................CATGGAACTTCTCACCAAACAG.2211.001.00---------------------------------------------------------1.00------------------
.........................................................................................................................................................ATGTTCTGGGCGGAGGGGCCATCCGCA.....................271.000.00---1.00------------------------------------------------------------------------
.................................................................................................................................................................GGCGGAGGGGCCATC.........................1540.750.75--------------------------------------------------------------------------0.75-
................TTGTCAGGGTTGTGTCT........................................................................................................................................................................1730.330.33-----------------------0.33----------------------------------------------------
................................TCCAGTCCTCTCTGGAGG.......................................................................................................................................................1830.330.33-----------0.33----------------------------------------------------------------
.........................................................................................................................................................................................CTTCTCACCAAACAG.1560.170.17---------------------------------------------------------------------------0.17

Antisense strand
CCCTTTGACCCACCATTTGTCAGGGTTGTGTCTCCAGTCCTCTCTGGAGGGTGAGTGGCTGGCATGCGGAAGAGGGCATCTCCTCTGGCAGAGGGCGGGGAAGAGACTTGGAGATTTTGTCAGGCACAGCTGACTAACCTTTCTCATGCAGGTATGTTCTGGGCGGAGGGGCCATCTGCATGGAACTTCTCACCAAACAGG
.............................................................(((((.((.(((((..(((((((((.((.....)).))).........))))))...(((((......)))))...))))))))))))....................................................
..................................................51..................................................................................................151................................................
SizePerfect hitTotal NormPerfect NormSRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)		SRR189782SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		SRR037941(GSM510479)
293DroshaTN. (cell line)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330858(SRX091696)
tissue: skin psoriatic involveddisease state:. (skin)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		DRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR029125(GSM416754)
U2OS. (cell line)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM532876(GSM532876)
G547T. (cervix)		SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)		SRR330881(SRX091719)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR040010(GSM532895)
G529N. (cervix)		DRR000562(DRX000320)
Isolation of RNA following immunoprecipitatio. (ago3 cell line)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)		SRR363675(GSM830252)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)		SRR040025(GSM532910)
G613T. (cervix)		SRR015447(SRR015447)
nuclear small RNAs. (breast)		SRR037938(GSM510476)
293Red. (cell line)		SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)		SRR390723(GSM850202)
total small RNA. (cell line)		SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)		SRR553576(SRX182782)
source: Testis. (testes)		SRR191404(GSM715514)
47genomic small RNA (size selected RNA from t. (breast)		SRR029130(GSM416759)
DLD2. (cell line)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR033728(GSM497073)
MALT (MALT413). (B cell)		TAX577738(Rovira)
total RNA. (breast)		SRR033723(GSM497068)
L1236 cell line (L1236). (B cell)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		TAX577745(Rovira)
total RNA. (breast)		SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)		SRR191622(GSM715732)
175genomic small RNA (size selected RNA from . (breast)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR038852(GSM458535)
QF1160MB. (cell line)		SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)		SRR343335
.......................................................................................................................................................................................AACTTCTCACCAAACAATA 191.000.00----------------------------1.00-----------------------------------------------
............................................................................................................................GCATGAGAAAGGTTAGTCAGCTGTG.................................................... 2511.001.00-------------------------------------------------------------------1.00--------
.........................TTGTGTCTCCAGTCCTGCAC............................................................................................................................................................ 201.000.00-----------------------------------1.00----------------------------------------