ID: uc001fec.1_intron_8_0_chr1_154163788_r.3p
GENE: TPM3(1)
chr1:154163738-154163987-


(12)
BRAIN 		(9)
BREAST 		(10)
CELL-LINE 		(1)
CERVIX 		(1)
FIBROBLAST 		(3)
HEART 		(8)
LIVER 		(7)
OTHER 		(3)
SKIN 		(1)
TESTES

Sense strand
CTTAGGATCAGAGATTACAGGGTCACAGGCCAAGCTACGGCATAACTCCTGAGGCAGTGGGCTGGAAGTGGCTGGGGAGAAAGTGTGTCTCACTAGGGATGGTAACATGGAGGTTACACTCAGGGCTCCAAGAGCCCAGGGTCCAACCCTGCATTGTTGTGTTTGTGTGTTTTTGTGTGTGACTCTCTGGGCTCCTATAGCTGGAGGATGAGCTGGCAGCCATGCAGAAGAAGCTGAAAGGGACAGAGGA
.............................................(((((.((.((............)).)).)))))..((((.....)))).((((..((....((((((((((((.((((((((...)))))).(((.....))).((((....))))...........)).))))))).))))).))))))......................................................
............................................45.........................................................................................................................................................200................................................
SizePerfect hitTotal NormPerfect NormGSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450600(GSM450600)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR189787SRR189782GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450607(GSM450607)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577738(Rovira)
total RNA. (breast)		SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		TAX577580(Rovira)
total RNA. (breast)		SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)		TAX577453(Rovira)
total RNA. (breast)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR343337TAX577744(Rovira)
total RNA. (breast)		GSM450604(GSM450604)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR189784SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		SRR037935(GSM510473)
293cand3. (cell line)		SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		TAX577746(Rovira)
total RNA. (breast)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR343336SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)		SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		SRR037937(GSM510475)
293cand2. (cell line)		TAX577739(Rovira)
total RNA. (breast)		SRR039636(GSM518473)
THP1_cyto_sRNAs. (cell line)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577742(Rovira)
total RNA. (breast)		SRR343335SRR189786GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577741(Rovira)
total RNA. (breast)		TAX577740(Rovira)
total RNA. (breast)		GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR040043(GSM532928)
G428T. (cervix)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR553576(SRX182782)
source: Testis. (testes)
.................................................TGAGGCAGTGGGCTGGGTAG.....................................................................................................................................................................................209.000.002.00-2.00-3.00---1.001.00---------------------------------------------
.................................................TGAGGCAGTGGGCTGGGTGG.....................................................................................................................................................................................208.000.00-1.002.00--1.00-1.00---1.00----------------------1.00-1.00------------------
.................................................TGAGGCAGTGGGCTGGGTA......................................................................................................................................................................................195.000.00-1.001.00--2.00------------------------------------1.00------------
.................................................TGAGGCAGTGGGCTGGGT.......................................................................................................................................................................................185.000.001.002.00--------1.001.00-------------------------------------------
.................................................TGAGGCAGTGGGCTGGGCGG.....................................................................................................................................................................................205.000.001.001.00----1.00--------------------1.00---1.00-----------------------
.................................................TGAGGCAGTGGGCTGGGTTG.....................................................................................................................................................................................205.000.002.001.00-------1.00---------1.00-----------------------------------
.................................................TGAGGCAGTGGGCTGTAT.......................................................................................................................................................................................184.000.00-1.00----1.00------1.00---------------------1.00-------------------
.................................................TGAGGCAGTGGGCTGTA........................................................................................................................................................................................174.000.001.00-----1.001.00------------1.00----------------------------------
.................................................TGAGGCAGTGGGCTGGGCGA.....................................................................................................................................................................................203.000.00-----1.00----1.00----1.00---------------------------------------
.................................................................AAGTGGCTGGGGAGAAAA.......................................................................................................................................................................183.000.00------------1.00---1.001.00-------------------------------------
.................................................................................................................................................................................................................................AGAAGAAGCTGAAAGGGACAGAG..2312.002.00---------------------1.00---------------------1.00-----------
.................................................TGAGGCAGTGGGCTGTATA......................................................................................................................................................................................192.000.00--1.00--1.00-------------------------------------------------
.................................................................AAGTGGCTGGGGAGACATC......................................................................................................................................................................192.000.00--------------1.00---------------1.00------------------------
.................................................TGAGGCAGTGGGCTGGGTT......................................................................................................................................................................................192.000.001.00--------------------------------------1.00---------------
.................................................TGAGGCAGTGGGCTGGGTTA.....................................................................................................................................................................................202.000.00--------1.00------------------------1.00---------------------
.................................................TGAGGCAGTGGGCTGGA........................................................................................................................................................................................1751.401.400.20-0.20----0.20-0.20-0.20--------0.20-----------------------------0.20----
.............................................................................................................................................................................TGTGTGTGACTCTCTGCAG..........................................................191.000.00-----------------------------------------1.00-------------
.................................................................AAGTGGCTGGGGAGAAATC......................................................................................................................................................................191.000.00--------------1.00----------------------------------------
.................................................TGAGGCAGTGGGCTGGAAAGCT...................................................................................................................................................................................221.000.00---1.00---------------------------------------------------
.............................................................................................................................................................TGTGTTTGTGTGTTTTTGTGTGTGCGT..................................................................271.000.00----------------------------------------------1.00--------
.................................................TGAGGCAGTGGGCTGGCTAG.....................................................................................................................................................................................201.000.00----1.00--------------------------------------------------
.................................................TGAGGCAGTGGGCTGAC........................................................................................................................................................................................171.000.00---1.00---------------------------------------------------
.................................................TGAGGCAGTGGGCTGGAACTGT...................................................................................................................................................................................221.000.00---1.00---------------------------------------------------
.................................................................................................................................................................................................................................AGAAGAAGCTGAAAGGGATCAA...221.000.00-----------------------1.00-------------------------------
.................................................................AAGTGGCTGGGGAGACACA......................................................................................................................................................................191.000.00-1.00-----------------------------------------------------
.................................................TGAGGCAGTGGGCTGGGTGT.....................................................................................................................................................................................201.000.001.00------------------------------------------------------
.................................................................AAGTGGCTGGGGAGAGC........................................................................................................................................................................171.000.00-----------------1.00-------------------------------------
.................................................................AAGTGGCTGGGGAGACACT......................................................................................................................................................................191.000.00-----1.00-------------------------------------------------
.................................................TGAGGCAGTGGGCTGTCCC......................................................................................................................................................................................191.000.00----1.00--------------------------------------------------
.................................................TGAGGCAGTGGGCTGTGTT......................................................................................................................................................................................191.000.00-------------1.00-----------------------------------------
.................................................TGAGGCAGTGGGCTGAATA......................................................................................................................................................................................191.000.00---1.00---------------------------------------------------
..................................................................................................................................................................................GTGACTCTCTGGGCTCCTATAG..................................................2211.001.00----------------------------1.00--------------------------
................................................................................................................................................................................................................................CAGAAGAAGCTGAAAGGGGGA.....211.000.00--------------------------1.00----------------------------
.............................................................CTGGAAGTGGCTGGGGAGAAA........................................................................................................................................................................2111.001.00--------------------------------------------1.00----------
............................................................GCTGGAAGTGGCTGGGGTAG..........................................................................................................................................................................201.000.00---------------1.00---------------------------------------
.................................................................AAGTGGCTGGGGAGAAAAAA.....................................................................................................................................................................201.000.00------------1.00------------------------------------------
.............................CCAAGCTACGGCATAACTCC.........................................................................................................................................................................................................2011.001.00--------------------------------------1.00----------------
................................................................GAAGTGGCTGGGGAGAGGT.......................................................................................................................................................................191.000.00---------------------------------------------1.00---------
.................................................TGAGGCAGTGGGCTGTCTG......................................................................................................................................................................................191.000.00---1.00---------------------------------------------------
.................................................................AAGTGGCTGGGGAGACAT.......................................................................................................................................................................181.000.00-----1.00-------------------------------------------------
.................................................TGAGGCAGTGGGCTGGGCTG.....................................................................................................................................................................................201.000.00--1.00----------------------------------------------------
.........................................................................................................................AGGGCTCCAAGAGCCCAGGGTCCAGTAG.....................................................................................................281.000.00--------------------------------1.00----------------------
.................................................................AAGTGGCTGGGGAGACATA......................................................................................................................................................................191.000.00----------------1.00--------------------------------------
.................................................TGAGGCAGTGGGCTGTATG......................................................................................................................................................................................191.000.00----1.00--------------------------------------------------
...............................................................................................................................................................................................................................GCAGAAGAAGCTGAAAGGGACAGA...2411.001.00-------------------------------------1.00-----------------
.................................................TGAGGCAGTGGGCTGTAA.......................................................................................................................................................................................181.000.00---1.00---------------------------------------------------
.................................................TGAGGCAGTGGGCTGTGTA......................................................................................................................................................................................191.000.001.00------------------------------------------------------
.................................................TGAGGCAGTGGGCTGTC........................................................................................................................................................................................171.000.00---1.00---------------------------------------------------
.................................................TGAGGCAGTGGGCTGTCTA......................................................................................................................................................................................191.000.00----1.00--------------------------------------------------
.................................................TGAGGCAGTGGGCTGGACAGT....................................................................................................................................................................................2150.601.40--0.200.20---------------0.20-----------------------------------
.................................................TGAGGCAGTGGGCTGGACAG.....................................................................................................................................................................................2050.601.40--0.20-0.20--------------0.20-----------------------------------
.................................................TGAGGCAGTGGGCTGGACGGT....................................................................................................................................................................................2150.601.40--0.20-----0.20-0.20--------------------------------------------
.................................................TGAGGCAGTGGGCTGGACTGT....................................................................................................................................................................................2150.401.40-0.20--0.20--------------------------------------------------
.................................................TGAGGCAGTGGGCTGGACGAT....................................................................................................................................................................................2150.201.40-------0.20-----------------------------------------------
.................................................TGAGGCAGTGGGCTGGACTAT....................................................................................................................................................................................2150.201.400.20------------------------------------------------------
.................................................TGAGGCAGTGGGCTGGACAA.....................................................................................................................................................................................2050.201.40---0.20---------------------------------------------------
.........................................................................................................................................................TTGTTGTGTTTGTGTGTT...............................................................................1850.200.20---------------------------------------------------0.20---
.................................................TGAGGCAGTGGGCTGGACTCT....................................................................................................................................................................................2150.201.40-------------------------------------------------0.20-----
.................................................TGAGGCAGTGGGCTGGACTG.....................................................................................................................................................................................2050.201.40-----0.20-------------------------------------------------
.................................................TGAGGCAGTGGGCTGGACGG.....................................................................................................................................................................................2050.201.40-0.20-----------------------------------------------------
..................................................................AGTGGCTGGGGAGAAAG.......................................................................................................................................................................1760.170.17----------------------------------------------------0.17--
.........................................................................................................................................................................................................................................CTGAAAGGGACAGAGG.1680.120.12------------------------------------------------------0.12

Antisense strand
CTTAGGATCAGAGATTACAGGGTCACAGGCCAAGCTACGGCATAACTCCTGAGGCAGTGGGCTGGAAGTGGCTGGGGAGAAAGTGTGTCTCACTAGGGATGGTAACATGGAGGTTACACTCAGGGCTCCAAGAGCCCAGGGTCCAACCCTGCATTGTTGTGTTTGTGTGTTTTTGTGTGTGACTCTCTGGGCTCCTATAGCTGGAGGATGAGCTGGCAGCCATGCAGAAGAAGCTGAAAGGGACAGAGGA
.............................................(((((.((.((............)).)).)))))..((((.....)))).((((..((....((((((((((((.((((((((...)))))).(((.....))).((((....))))...........)).))))))).))))).))))))......................................................
............................................45.........................................................................................................................................................200................................................
SizePerfect hitTotal NormPerfect NormGSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450600(GSM450600)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR189787SRR189782GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450607(GSM450607)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577738(Rovira)
total RNA. (breast)		SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		TAX577580(Rovira)
total RNA. (breast)		SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)		TAX577453(Rovira)
total RNA. (breast)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR343337TAX577744(Rovira)
total RNA. (breast)		GSM450604(GSM450604)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR189784SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		SRR037935(GSM510473)
293cand3. (cell line)		SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		TAX577746(Rovira)
total RNA. (breast)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR343336SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)		SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		SRR037937(GSM510475)
293cand2. (cell line)		TAX577739(Rovira)
total RNA. (breast)		SRR039636(GSM518473)
THP1_cyto_sRNAs. (cell line)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577742(Rovira)
total RNA. (breast)		SRR343335SRR189786GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577741(Rovira)
total RNA. (breast)		TAX577740(Rovira)
total RNA. (breast)		GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR040043(GSM532928)
G428T. (cervix)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR553576(SRX182782)
source: Testis. (testes)
..............................................................................................................................................................GTGTTTGTGTGTTTTCTG.......................................................................... 184.000.00------------------2.00----------1.00----------1.00--------------
.........................................................................................................................................................TTGTTGTGTTTGTGTCAC............................................................................... 181.000.00------------------------1.00------------------------------
.................CAGGGTCACAGGCCAGCTT...................................................................................................................................................................................................................... 191.000.00-------------------------1.00-----------------------------
.................................................................................................................................................................TTTGTGTGTTTTTGTGTCG...................................................................... 191.000.00----------------------1.00--------------------------------
.........................................................................................................................................................................................AGCTATAGGAGCCCAGA................................................ 1720.500.50-----------------------------------------------0.50-------
.....................................................................................................................................................ACAAACACAACAATGCA.................................................................................... 1720.500.50------------------------------------------------0.50------
......................................................................................................................................GGGTTGGACCCTGGG..................................................................................................... 1570.140.14-----------------------------------------------------0.14-