ID: uc001fcr.2_intron_3_0_chr1_153635753_r.5p
GENE: (10)
chr1:153636319-153636568-


(3)
BREAST 		(6)
CELL-LINE 		(4)
HEART 		(1)
HELA 		(1)
LIVER 		(2)
OTHER 		(5)
SKIN 		(1)
XRN.ip

Sense strand
TTCGTTTTCCTGGCTTTGAGCCCCTCACACCCTGGATCCTTGACCTACTAGTAAGTAAAGATGGGCAATTGGAGTTCCTCATCATCCTTATTTACTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAACTCTGAAATTCACCAGAGTCTGAAATTTGGTGAAGCTTAAAAGAAATTTTATTGGTAGACAAGTAATCCAATAAAAATTCAACATTTACATGACTCAGAGACATTTGTTTAAA
...........................................................................................((((((.((.((.((.((.((....)).)).)).)).)).))))))...(((..(((((((((........)))))))))..)))..........................................................................
...........................................................................................92.....................................................................................179.....................................................................
SizePerfect hitTotal NormPerfect NormSRR060169(GSM565979)
5-8F_cytoplasm. (cell line)		SRR390723(GSM850202)
total small RNA. (cell line)		SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189784SRR189782SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		TAX577580(Rovira)
total RNA. (breast)		SRR330857(SRX091695)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR189787SRR191607(GSM715717)
192genomic small RNA (size selected RNA from . (breast)		SRR189783SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		TAX577743(Rovira)
total RNA. (breast)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
................................................................................................AGTAGTAGTAGTAGTAGGGCT.....................................................................................................................................2124.000.008.0016.00------------------------
....................................................................................................................TAGTAGTAGTAGTAGTAGGGCT................................................................................................................2216.000.0016.00-------------------------
...............................................................................................TAGTAGTAGTAGTAGTAGTAGTAGTAGCATT............................................................................................................................3110.000.00----10.00---------------------
............................................................................................................AGTAGTAGTAGTAGTAGTAGGGCT......................................................................................................................247.000.00---7.00----------------------
...............................................................................................TAGTAGTAGTAGTAGTAGTAGGGCT..................................................................................................................................257.000.00---7.00----------------------
................................................................................................AGTAGTAGTAGTAGTAGTAGGGC...................................................................................................................................237.000.007.00-------------------------
....................CCCCTCACACCCTGGATCCTTGACCT............................................................................................................................................................................................................2612.002.00-------1.00------1.00-----------
....................CCCCTCACACCCTGGATCCTTGACCTACTAG.......................................................................................................................................................................................................3112.002.00------1.001.00------------------
.........CTGGCTTTGAGCCCCTCACACCCTG........................................................................................................................................................................................................................2521.501.50--------1.50-----------------
....................CCCCTCACACCCTGGATCCTTGACCTACTA........................................................................................................................................................................................................3011.001.00------1.00-------------------
.....................................................................................................................................................................................................AAGTAATCCAATAAAGGAA..................................191.000.00--------------------1.00-----
...........................CACCCTGGATCCTTGACCTACTAG.......................................................................................................................................................................................................2411.001.00----------------1.00---------
............................................................................................................................................................CTGAAATTTGGTGAAGCTT...........................................................................1911.001.00-----1.00--------------------
..................................................................................................................................GTAGTAACTCTGAAATTCACCAGA................................................................................................2411.001.00-------------------1.00------
.....................................................................................................................................................................................................AAGTAATCCAATAAAGGGT..................................191.000.00---------1.00----------------
............................................................................................................................GTAGTAGTAGTAACTCTGA...........................................................................................................1911.001.00---------------1.00----------
....................CCCCTCACACCCTGGATCCTTGACCTACT.........................................................................................................................................................................................................2911.001.00------1.00-------------------
............................ACCCTGGATCCTTGACCTACTA........................................................................................................................................................................................................2211.001.00-------1.00------------------
.................GAGCCCCTCACACCCTGGAT.....................................................................................................................................................................................................................2020.500.50---------------------0.50----
.................................GGATCCTTGACCTACT.........................................................................................................................................................................................................1630.330.33----------------------0.33---
...............................................................................................................................GTAGTAGTAACTCTG............................................................................................................1540.250.25-----------------------0.25--

Antisense strand
TTCGTTTTCCTGGCTTTGAGCCCCTCACACCCTGGATCCTTGACCTACTAGTAAGTAAAGATGGGCAATTGGAGTTCCTCATCATCCTTATTTACTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAACTCTGAAATTCACCAGAGTCTGAAATTTGGTGAAGCTTAAAAGAAATTTTATTGGTAGACAAGTAATCCAATAAAAATTCAACATTTACATGACTCAGAGACATTTGTTTAAA
...........................................................................................((((((.((.((.((.((.((....)).)).)).)).)).))))))...(((..(((((((((........)))))))))..)))..........................................................................
...........................................................................................92.....................................................................................179.....................................................................
SizePerfect hitTotal NormPerfect NormSRR060169(GSM565979)
5-8F_cytoplasm. (cell line)		SRR390723(GSM850202)
total small RNA. (cell line)		SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189784SRR189782SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		TAX577580(Rovira)
total RNA. (breast)		SRR330857(SRX091695)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR189787SRR191607(GSM715717)
192genomic small RNA (size selected RNA from . (breast)		SRR189783SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		TAX577743(Rovira)
total RNA. (breast)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
..................................................................................................................AGTAGTAGTAGTAGTAGTAGCT.................................................................................................................. 2214.000.00--14.00-----------------------
................................................................................................AGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGCA........................................................................................................................ 344.000.00-----4.00--------------------
..................................CTTACTAGTAGGTCAAGGATC................................................................................................................................................................................................... 2111.001.00----------1.00---------------
.......................................................................GAGTTCCTCATCATCCTG................................................................................................................................................................. 181.000.00-----------1.00--------------
........................................................................AGTTCCTCATCATCCTTGCGT............................................................................................................................................................. 211.000.00------------------1.00-------
......TTCCTGGCTTTGAGCCAA.................................................................................................................................................................................................................................. 181.000.00-------------1.00------------
...................GTCAAGGATCCAGGGTGTGAGGGGC.............................................................................................................................................................................................................. 2511.001.00-----------------1.00--------
......................................................................................................................................................................................................................................TTTAAACAAATGTCTCTGAG 2011.001.00------------1.00-------------
.......................................................................................................................................................CCAAATTTCAGACTCT................................................................................... 1660.170.17------------------------0.17-
..............................................................................................CTACTACTACTACTACTACTACTACTACTAG............................................................................................................................. 3170.140.14-------------------------0.14