ID: uc001fcr.2_intron_11_0_chr1_153642355_r
GENE: (2)
chr1:153642305-153642696-


(1)
BREAST 		(11)
CELL-LINE 		(2)
HELA 		(1)
LIVER 		(3)
OTHER 		(3)
SKIN 		(1)
TESTES 		(1)
XRN.ip

Sense strand
GGCCGTGGTCGTGGTGGGCGCTTTGGTTCCAGAGGAGGCCCAGGAGGAGGGTGAGTACCAGCTTTTAGCATCTCTGCACTTGGTTGTTAGTTTCTGCTTGTCATCTAAATAGGAGTTTTAGAGTAGACTAATGTCACTTGGTTTTGCGAGAGCCAACTGTGGTCTTTTCCTGCACTCCTGTTAAATGAATTTGGCCCCACTATGCTAAGAATGATTCTTTCCCTCCCCGGAGACTTTGTCACTCATTCTGAGGACTGACATGTTTTCAAAATTGTTGGCGTGTTATTTACATCTCGCTTGATTCCTACCTAGGGAATAATTTGGCTGTTTTTCATGTTTTAGGTTCAGGCCCTTTGTACCACATATCCCATTTGACTTCTATTTGGTGAGTA
...................................................................................................................................................((.((((((.(((((......)).))).((((.......(((((.(((.........((.(((((((.....(((......)))(((...)))..))))))).))...(((((((((..((....))..)))))))))..........))).))))).......)))).....)))))).))...............................................................
...................................................................................................................................................148.......................................................................................................................................................................................334........................................................
SizePerfect hitTotal NormPerfect NormSRR037939(GSM510477)
293cand5_rep1. (cell line)		DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		SRR037940(GSM510478)
293cand5_rep2. (cell line)		DRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189786SRR343334SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		SRR037936(GSM510474)
293cand1. (cell line)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR189782TAX577742(Rovira)
total RNA. (breast)		SRR553576(SRX182782)
source: Testis. (testes)		SRR037934(GSM510472)
293cand4_rep3. (cell line)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR037933(GSM510471)
293cand4_rep2. (cell line)		SRR207119(GSM721081)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)
..............................................................................................................................................................................................................................................................................................................TCCTACCTAGGGAATAATTTGGCTGTTTT.............................................................29120.0020.0015.00-5.00-------------------
..............................................................................................................................................................................................................................................................................ATTGTTGGCGTGTTATTTACATCTCGCTTGATTCCTACCTAGGGAATAATTTGGCTGTTTTTCATGTTTTA...................................................71110.0010.00-10.00--------------------
..............................................................................................................................................................................................................................................................................................................TCCTACCTAGGGAATAATTTGGCTGGTTT.............................................................296.000.001.00-5.00-------------------
.............................................................................................................................................................................................................................................................................AATTGTTGGCGTGTTATTTACATCTCGCTTGATTCCTACCTAGGGAATAATTTGGCTGTTTTTCATGTTTTAG..................................................7315.005.00-5.00--------------------
..............................................................................................................................................................................................................................................................................ATTGTTGGCGTGTTATTTACATCTCGCTTGATTCCTACCTAGGGAATAATTTGGCTGTTTTTCATGTTTTAG..................................................7213.003.00---3.00------------------
...................................................................GCATCTCTGCACTTGGTTGTTAGTTTCTTC.......................................................................................................................................................................................................................................................................................................302.000.00--------------1.00---1.00---
.....................................................................................................................................................................................................................................................................................................................TAGGGAATAATTTGGCTGTTT..............................................................2111.001.00---------------1.00------
.......................TGGTTCCAGAGGAGGCC................................................................................................................................................................................................................................................................................................................................................................1711.001.00------------1.00---------
..............TGGGCGCTTTGGTTCCAGAGGAGGCC................................................................................................................................................................................................................................................................................................................................................................2611.001.00-------------1.00--------
.GCCGTGGTCGTGGTGGGCGCTTTGGTTCCAGAGG.....................................................................................................................................................................................................................................................................................................................................................................3411.001.00----------------1.00-----
.......................................................................................................................................................................................................................................................................................................................GGGAATAATTTGGCTGTTTTT............................................................2111.001.00-------1.00--------------
......................................................................................................................................................................................................................................................................................................................................................................CCACATATCCCATTTGACTTCTACTT........261.000.00------1.00---------------
...........................................................................................................................................GGTTTTGCGAGAGCCAACTGTGGTCTTTTCC..............................................................................................................................................................................................................................3111.001.00----1.00-----------------
.......................................................................................................................................................................................................................................................................................................................................................TTCAGGCCCTTTGTACCACATCCC.........................241.000.00-----1.00----------------
.............................................................................................................................................................................................................................................................................................................................AATTTGGCTGTTTTTCATGTTTTAG..................................................2511.001.00---------1.00------------
..........................TTCCAGAGGAGGCCCAGGAGGAGGGCT...................................................................................................................................................................................................................................................................................................................................................271.000.00----1.00-----------------
........................................................................................................................................................................................................................................................................................................................GGAATAATTTGGCTGTTTTTCATGTTTTAG..................................................3011.001.00--------1.00-------------
....GTGGTCGTGGTGGGCGCCCG................................................................................................................................................................................................................................................................................................................................................................................201.000.00----------1.00-----------
..............................................................................................................................................................................................................................................................................................................TCCTACCTAGGGAATAATTTGGCTGATTT.............................................................291.000.001.00---------------------
........................................................................................................................................................CCAACTGTGGTCTTTTTTT.............................................................................................................................................................................................................................191.000.00-----------1.00----------
.....................................................................................................................................................................................................................................................................................................................................................................ACCACATATCCCATTTGTTTG..............211.000.00--------------------1.00-
.....................................................................................................................................................................................................................................................................GTTTTCAAAATTGTTGGCGTGTTATTTAC......................................................................................................2911.001.00-------------------1.00--
.....................................................................................................................TTAGAGTAGACTAATGT..................................................................................................................................................................................................................................................................1720.500.50---------------------0.50

Antisense strand
GGCCGTGGTCGTGGTGGGCGCTTTGGTTCCAGAGGAGGCCCAGGAGGAGGGTGAGTACCAGCTTTTAGCATCTCTGCACTTGGTTGTTAGTTTCTGCTTGTCATCTAAATAGGAGTTTTAGAGTAGACTAATGTCACTTGGTTTTGCGAGAGCCAACTGTGGTCTTTTCCTGCACTCCTGTTAAATGAATTTGGCCCCACTATGCTAAGAATGATTCTTTCCCTCCCCGGAGACTTTGTCACTCATTCTGAGGACTGACATGTTTTCAAAATTGTTGGCGTGTTATTTACATCTCGCTTGATTCCTACCTAGGGAATAATTTGGCTGTTTTTCATGTTTTAGGTTCAGGCCCTTTGTACCACATATCCCATTTGACTTCTATTTGGTGAGTA
...................................................................................................................................................((.((((((.(((((......)).))).((((.......(((((.(((.........((.(((((((.....(((......)))(((...)))..))))))).))...(((((((((..((....))..)))))))))..........))).))))).......)))).....)))))).))...............................................................
...................................................................................................................................................148.......................................................................................................................................................................................334........................................................
SizePerfect hitTotal NormPerfect NormSRR037939(GSM510477)
293cand5_rep1. (cell line)		DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		SRR037940(GSM510478)
293cand5_rep2. (cell line)		DRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189786SRR343334SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		SRR037936(GSM510474)
293cand1. (cell line)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR189782TAX577742(Rovira)
total RNA. (breast)		SRR553576(SRX182782)
source: Testis. (testes)		SRR037934(GSM510472)
293cand4_rep3. (cell line)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR037933(GSM510471)
293cand4_rep2. (cell line)		SRR207119(GSM721081)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)
.............................CAGAGGAGGCCCAGGATAGT....................................................................................................................................................................................................................................................................................................................................................... 201.000.00-----1.00----------------
....................................................................................................................................................................................................................................................................................................................................................................TACCACATATCCCATTTA.................. 181.000.00-----------------1.00----