ID: uc001exv.1_intron_6_0_chr1_151317665_r.5p
GENE: RFX5(4)
chr1:151318204-151318453-


(1)
AGO2.ip 		(4)
B-CELL 		(13)
BRAIN 		(18)
BREAST 		(26)
CELL-LINE 		(3)
CERVIX 		(1)
FIBROBLAST 		(2)
HEART 		(2)
HELA 		(7)
LIVER 		(2)
OTHER 		(2)
RRP40.ip 		(3)
SKIN 		(1)
TESTES 		(4)
UTERUS 		(1)
XRN.ip

Sense strand
CTCCTCTTCCCCACAGCAAGGCCGTGCAGAACAAAGTAGAGGGGATCCTGGTAAGTGTGTTGGGGAAGAGGGCAAGAGAGGGATGGAAATGCTGAGGGAGGAGGATGTGAGGATGATGGGCATCAACAAAACATTGATGTGGGAGAGGTAGGGTCCTCTGCCTTGTCAGAAGATAGTTGGCTTTGCAAACTTGCTGCCAGTTTGACTTTGTGCCTCTCACTTGATCTCTGTGAGCACTTGCATAGAAGCC
.........................................................................................((((..........(((((...((((.....))))......)))))...........))))....................................................................................................
.......................................................................................88............................................................150..................................................................................................
SizePerfect hitTotal NormPerfect NormSRR189782SRR060986(GSM569190)
Human memory B cell [09-001]. (cell line)		SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		TAX577742(Rovira)
total RNA. (breast)		TAX577580(Rovira)
total RNA. (breast)		SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577453(Rovira)
total RNA. (breast)		SRR189784SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR029128(GSM416757)
H520. (cell line)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577743(Rovira)
total RNA. (breast)		TAX577588(Rovira)
total RNA. (breast)		GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		GSM450604(GSM450604)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577590(Rovira)
total RNA. (breast)		GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577738(Rovira)
total RNA. (breast)		GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)		GSM450607(GSM450607)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR189787SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		TAX577739(Rovira)
total RNA. (breast)		GSM450600(GSM450600)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577744(Rovira)
total RNA. (breast)		SRR039637(GSM518474)
THP1_total_sRNAs. (cell line)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)		SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		SRR189783SRR330910(SRX091748)
tissue: normal skindisease state: normal. (skin)		SRR033710(GSM497055)
GCB DLBCL (GCB385). (B cell)		TAX577740(Rovira)
total RNA. (breast)		SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)		TAX577741(Rovira)
total RNA. (breast)		SRR029131(GSM416760)
MCF7. (cell line)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		TAX577746(Rovira)
total RNA. (breast)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR060985(GSM569189)
Human naive B cell [09-001]. (cell line)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR343334DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)		SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		GSM532883(GSM532883)
G871N. (cervix)		SRR191607(GSM715717)
192genomic small RNA (size selected RNA from . (breast)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR033724(GSM497069)
L428 cell line (L428). (B cell)		SRR207118(GSM721080)
RRP40 knockdown. (RRP40 cell line)		GSM956925PazD5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)		SRR189785SRR444067(SRX128915)
Sample 24cDNABarcode: AF-PP-340: ACG CTC TTC . (cell line)		SRR039636(GSM518473)
THP1_cyto_sRNAs. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)		SRR029127(GSM416756)
A549. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR015448(SRR015448)
cytoplasmic small RNAs. (breast)		SRR037940(GSM510478)
293cand5_rep2. (cell line)		SRR553576(SRX182782)
source: Testis. (testes)		TAX577579(Rovira)
total RNA. (breast)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR037939(GSM510477)
293cand5_rep1. (cell line)		GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		TAX577589(Rovira)
total RNA. (breast)		SRR040018(GSM532903)
G701N. (cervix)		SRR040028(GSM532913)
G026N. (cervix)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		GSM450597(GSM450597)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577745(Rovira)
total RNA. (breast)
............................................................................................TGAGGGAGGAGGATGTATAG..........................................................................................................................................20136.000.0036.0015.0011.004.007.0010.001.004.003.003.004.003.00-6.00---2.002.001.001.003.00-2.00-1.00--2.001.00-1.00--1.00-----2.00---2.002.00-----1.001.00-------1.00-----------1.00----------1.00-1.00------
............................................................................................TGAGGGAGGAGGATGTATA...........................................................................................................................................1922.000.00--2.00--1.00---5.003.001.00-----1.00-1.00--------1.00--1.00---1.001.00------1.00-----1.00---------1.00------1.00-------------------------
............................................................................................TGAGGGAGGAGGATGTAT............................................................................................................................................1820.000.002.002.00-1.00----1.00---1.00--2.00-1.00--------1.00---1.00-1.001.001.00-----------2.00---------1.00-------------------1.00---1.00-----------
............................................................................................TGAGGGAGGAGGATGTATAA..........................................................................................................................................2011.000.00-1.002.00-3.00------1.00-------1.00-------------1.00----------------------------------1.00----------1.00------------
............................................................................................TGAGGGAGGAGGATGTATAT..........................................................................................................................................207.000.002.00---2.00---1.00-1.00----------------------1.00----------------------------------------------------------
............................................................................................TGAGGGAGGAGGATGTATGG..........................................................................................................................................207.000.003.00--1.00---------1.00--------1.00---------------1.00-----------------------------------------------------
............................................................................................TGAGGGAGGAGGATGTGTGGT.........................................................................................................................................2146.501.00--0.50-0.25--0.500.25---1.25-0.250.25--0.250.75-----0.250.500.25---------0.25----------0.25-------------------------------------0.50-0.25---
............................................................................................TGAGGGAGGAGGATGTA.............................................................................................................................................176.000.00---1.00--------1.00------------1.001.00----------------1.00----1.00-------------------------------------------
...............................................................................................................................AAAACATTGATGTGGTAGA........................................................................................................196.000.00----------------5.00---------------------------------------------1.00-----------------------------
............................................................................................TGAGGGAGGAGGATGTAAAG..........................................................................................................................................205.000.002.001.00------------------1.00---------1.00-------------------------------------------------------------
............................................................................................TGAGGGAGGAGGATGTGTGG..........................................................................................................................................2044.001.00-0.25-0.25-0.25-0.50-------0.75-------0.25--0.25---------0.250.25-----------0.50-0.250.25---------------------------------------
............................................................................................TGAGGGAGGAGGATGTAGAG..........................................................................................................................................204.000.00-1.001.00------1.00-------------------------1.00--------------------------------------------------------
..................AGGCCGTGCAGAACAAAGTAGAGG................................................................................................................................................................................................................2414.004.00------3.00--------1.00----------------------------------------------------------------------------
............................................................................................TGAGGGAGGAGGATGTATTG..........................................................................................................................................204.000.00-2.001.00-------------------------------------------------------------------------------1.00---------
.................AAGGCCGTGCAGAACAAAGTAGAG.................................................................................................................................................................................................................2413.003.00------1.00-----------------------------------1.00---------------------1.00---------------------------
............................................................................................TGAGGGAGGAGGATGTTTAG..........................................................................................................................................203.000.003.00-------------------------------------------------------------------------------------------
............................................................................................TGAGGGAGGAGGATGTGAGGCT........................................................................................................................................2213.002.00------1.00----------------------1.00----1.00---------------------------------------------------------
............................................................................................TGAGGGAGGAGGATGTATG...........................................................................................................................................193.000.00---1.00-----------------1.00----------------1.00-----------------------------------------------------
...........................................................................................CTGAGGGAGGAGGATGTATAG..........................................................................................................................................213.000.001.00-------------------1.00----------------1.00------------------------------------------------------
............................................................................................TGAGGGAGGAGGATGTGAGGTTT.......................................................................................................................................2313.002.00----------------------1.00-1.00----1.00--------------------------------------------------------------
............................................................................................TGAGGGAGGAGGATGTGTAGT.........................................................................................................................................2143.001.00---1.000.75--0.50---0.250.25-------------0.25-----------------------------------------------------------------
............................................................................................TGAGGGAGGAGGATGTCTAG..........................................................................................................................................202.000.001.00----------------------1.00--------------------------------------------------------------------
............................................................................................TGAGGGAGGAGGATGAGTG...........................................................................................................................................192.000.00---------------1.00--------------------1.00-------------------------------------------------------
............................................................................................TGAGGGAGGAGGATGTATT...........................................................................................................................................192.000.00-1.00----------1.00-------------------------------------------------------------------------------
............................................................................................TGAGGGAGGAGGATGTTTGG..........................................................................................................................................202.000.00--1.00----------------------------1.00------------------------------------------------------------
............................................................................................TGAGGGAGGAGGATGTGAAGTT........................................................................................................................................222.000.00---2.00----------------------------------------------------------------------------------------
.................AAGGCCGTGCAGAACAAAGT.....................................................................................................................................................................................................................2012.002.00---------------------------------------2.00----------------------------------------------------
............................................................................................TGAGGGAGGAGGATGTGAGG..........................................................................................................................................2012.002.00------1.00-----------------------1.00-------------------------------------------------------------
............................................................................................TGAGGGAGGAGGATGAAA............................................................................................................................................182.000.00------------1.00-------------------1.00-----------------------------------------------------------
...........................AGAACAAAGTAGAGGGGATCCTG........................................................................................................................................................................................................2312.002.00-----------------------------------------2.00--------------------------------------------------
............................................................................................TGAGGGAGGAGGATGTGAGGTT........................................................................................................................................2212.002.00---1.00----1.00-----------------------------------------------------------------------------------
.............................................................................................GAGGGAGGAGGATGTGAGGGT........................................................................................................................................212.000.00--------------2.00-----------------------------------------------------------------------------
...........................................................................................................................................................................................................................CTTGATCTCTGTGAGCACTTGCATAGAAG..2912.002.00------2.00-------------------------------------------------------------------------------------
............................................................................................TGAGGGAGGAGGATGTGTAG..........................................................................................................................................2041.251.000.75-------0.25-------------------0.25---------------------------------------------------------------
............................................................................................TGAGGGAGGAGGATGTGAGGTCA.......................................................................................................................................2311.002.00-------1.00------------------------------------------------------------------------------------
............................................................................................TGAGGGAGGAGGATGTCT............................................................................................................................................181.000.00-1.00------------------------------------------------------------------------------------------
............................................................................................TGAGGGAGGAGGATGTGAGGTTAA......................................................................................................................................2411.002.00----------------------------------------------------------------------1.00---------------------
............................................................................................TGAGGGAGGAGGATGAA.............................................................................................................................................171.000.00--------------------1.00-----------------------------------------------------------------------
............................................................................................TGAGGGAGGAGGATGTGAAA..........................................................................................................................................201.000.00-------1.00------------------------------------------------------------------------------------
............................................................................................TGAGGGAGGAGGATGTACAG..........................................................................................................................................201.000.00------------------1.00-------------------------------------------------------------------------
............................................................................................TGAGGGAGGAGGATGTTTA...........................................................................................................................................191.000.00------------1.00-------------------------------------------------------------------------------
............................................................................................TGAGGGAGGAGGATGTAAAA..........................................................................................................................................201.000.00------------------------------------------------------------------------------1.00-------------
............................................................................................TGAGGGAGGAGGATGTGAGGAT........................................................................................................................................2211.001.00--------------1.00-----------------------------------------------------------------------------
..............................................................................................AGGGAGGAGGATGTGAGGGTT.......................................................................................................................................211.000.00--------------1.00-----------------------------------------------------------------------------
............................................................................................TGAGGGAGGAGGATGTG.............................................................................................................................................1741.001.00-------0.250.25-------------0.25-------------------------0.25-------------------------------------------
............................................................................................TGAGGGAGGAGGATGTATTA..........................................................................................................................................201.000.00------------1.00-------------------------------------------------------------------------------
............................................................................................TGAGGGAGGAGGATGAGTA...........................................................................................................................................191.000.00-------------------------------------------------------1.00------------------------------------
............................................................................................TGAGGGAGGAGGATGTGATGGT........................................................................................................................................221.000.00--1.00-----------------------------------------------------------------------------------------
.............................................................................................GAGGGAGGAGGATGTGAGGTT........................................................................................................................................211.000.00--------------1.00-----------------------------------------------------------------------------
...............................................................................................................................AAAACATTGATGTGGTA..........................................................................................................171.000.00---------------------------------------------------------------------------1.00----------------
............................................................................................TGAGGGAGGAGGATGTGTAGG.........................................................................................................................................2141.001.00----0.25-------------------0.25-----------0.25-----------------------------------------------------0.25-
............................................................................................TGAGGGAGGAGGATGTAGA...........................................................................................................................................191.000.00-1.00------------------------------------------------------------------------------------------
.................AAGGCCGTGCAGAACAAAGTAGAGGGGA.............................................................................................................................................................................................................2811.001.00------1.00-------------------------------------------------------------------------------------
.............................................................................................GAGGGAGGAGGATGTGAGGGTT.......................................................................................................................................221.000.00--------------1.00-----------------------------------------------------------------------------
............................................................................................TGAGGGAGGAGGATGTAAA...........................................................................................................................................191.000.00-------------------------------------------------------------1.00------------------------------
............................GAACAAAGTAGAGGGGATC...........................................................................................................................................................................................................1911.001.00-----------------------------------------------------1.00--------------------------------------
.................AAGGCCGTGCAGAACAAAGTAGAGGG...............................................................................................................................................................................................................2611.001.00---------------------------1.00----------------------------------------------------------------
..................AGGCCGTGCAGAACAAAGTAGAGGG...............................................................................................................................................................................................................2511.001.00---------------------------1.00----------------------------------------------------------------
............................................................................................TGAGGGAGGAGGATGAAAA...........................................................................................................................................191.000.00-----------------------------------1.00--------------------------------------------------------
...........................................................................................CTGAGGGAGGAGGATGTCTG...........................................................................................................................................201.000.00------------------1.00-------------------------------------------------------------------------
..........................CAGAACAAAGTAGAGGGGATC...........................................................................................................................................................................................................2111.001.00-----------------------------------------------1.00--------------------------------------------
............................................................................................TGAGGGAGGAGGATGAAT............................................................................................................................................181.000.00----------------------1.00---------------------------------------------------------------------
............................................................................................TGAGGGAGGAGGATGAGTC...........................................................................................................................................191.000.00------------------------1.00-------------------------------------------------------------------
............................................................................................TGAGGGAGGAGGATGTATTT..........................................................................................................................................201.000.00--------------------------------1.00-----------------------------------------------------------
............................................................................................TGAGGGAGGAGGATGTGGGGT.........................................................................................................................................2141.001.00---0.25--------------------0.25------------0.25---------------0.25--------------------------------------
............................................................................................TGAGGGAGGAGGATGTGAGGAG........................................................................................................................................221.000.00---------------1.00----------------------------------------------------------------------------
.....................................................................................................................................................................TCAGAAGATAGTTGGCTTT..................................................................1911.001.00-----------------------------------------------------------------1.00--------------------------
.............................AACAAAGTAGAGGGGATCCTGCA......................................................................................................................................................................................................2311.001.00-----------------1.00--------------------------------------------------------------------------
..........................................................................AGAGAGGGATGGAAATTTA.............................................................................................................................................................191.000.00------------------------------------------1.00-------------------------------------------------
............................................................................................TGAGGGAGGAGGATGTGAGTTGA.......................................................................................................................................231.000.00---1.00----------------------------------------------------------------------------------------
............................................................................................TGAGGGAGGAGGATGTGAGGC.........................................................................................................................................2111.002.00-----------1.00--------------------------------------------------------------------------------
............................................................................................TGAGGGAGGAGGATGTGAGGTTA.......................................................................................................................................2311.002.00--------1.00-----------------------------------------------------------------------------------
.................AAGGCCGTGCAGAACA.........................................................................................................................................................................................................................1611.001.00---------------------------1.00----------------------------------------------------------------
.........................GCAGAACAAAGTAGAGGGGATCCTG........................................................................................................................................................................................................2511.001.00--------------------------------------------------1.00-----------------------------------------
............................................................................................TGAGGGAGGAGGATGTAGT...........................................................................................................................................191.000.00-----------1.00--------------------------------------------------------------------------------
............................................................................................TGAGGGAGGAGGATGTCTAA..........................................................................................................................................201.000.00----------1.00---------------------------------------------------------------------------------
.....................................................................................................................................................AGGGTCCTCTGCCTTGTCAGAAGA.............................................................................2411.001.00----------------------------------------------------------1.00---------------------------------
............................................................................................TGAGGGAGGAGGATGAGAA...........................................................................................................................................191.000.00------------------------1.00-------------------------------------------------------------------
........................TGCAGAACAAAGTAGAGGGGAAATT.........................................................................................................................................................................................................251.000.00------------------------------------------------------------------------------------1.00-------
.............................................................................................GAGGGAGGAGGATGTGTTGT.........................................................................................................................................201.000.00-------1.00------------------------------------------------------------------------------------
.................................................................................................................................AACATTGATGTGGGAAAAA......................................................................................................191.000.00---------------------------------------------------------------------1.00----------------------
............................................................................................TGAGGGAGGAGGATGAAAT...........................................................................................................................................191.000.00-------------------------1.00------------------------------------------------------------------
.....................................................................................................AGGATGTGAGGATGATGGGCAT...............................................................................................................................2211.001.00------1.00-------------------------------------------------------------------------------------
.............................AACAAAGTAGAGGGGATCCTG........................................................................................................................................................................................................2111.001.00---------------------------------------------------------1.00----------------------------------
...........................................................................................CTGAGGGAGGAGGATGTATGG..........................................................................................................................................211.000.001.00-------------------------------------------------------------------------------------------
............................................................................................TGAGGGAGGAGGATGTGAGGTGT.......................................................................................................................................2311.002.00---1.00----------------------------------------------------------------------------------------
.........................................................................................................................ATCAACAAAACATTGTTT...............................................................................................................181.000.00-------------------------------------------------------------------------1.00------------------
............................................................................................TGAGGGAGGAGGATGTAA............................................................................................................................................181.000.00--------1.00-----------------------------------------------------------------------------------
............................................................................................TGAGGGAGGAGGATGTGAGGG.........................................................................................................................................2111.002.00--1.00-----------------------------------------------------------------------------------------
............................................................................................TGAGGGAGGAGGATGTTTTG..........................................................................................................................................201.000.001.00-------------------------------------------------------------------------------------------
..................AGGCCGTGCAGAACAAAGT.....................................................................................................................................................................................................................1911.001.00-----------------------------------------------------------------------------1.00--------------
............................................................................................TGAGGGAGGAGGATGAATA...........................................................................................................................................191.000.00-----------1.00--------------------------------------------------------------------------------
.............................................................................................GAGGGAGGAGGATGTGAGGTTT.......................................................................................................................................221.000.00---------------------------------------------------------------------------------1.00----------
............................................................................................TGAGGGAGGAGGATGTGAGGCTTT......................................................................................................................................2411.002.00--------------1.00-----------------------------------------------------------------------------
............................................................................................TGAGGGAGGAGGATGTATAC..........................................................................................................................................201.000.001.00-------------------------------------------------------------------------------------------
............................................................................................TGAGGGAGGAGGATGTGT............................................................................................................................................1840.751.00-0.25------------0.25---------------------------------0.25-------------------------------------------
............................................................................................TGAGGGAGGAGGATGTGTAAT.........................................................................................................................................2140.751.00----0.25-------0.25------0.25------------------------------------------------------------------------
............................................................................................TGAGGGAGGAGGATGTGTATT.........................................................................................................................................2140.751.00---0.25---0.25-------0.25----------------------------------------------------------------------------
............................................................................................TGAGGGAGGAGGATGTGTTGT.........................................................................................................................................2140.751.00----0.25--0.25----0.25-------------------------------------------------------------------------------
............................................................................................TGAGGGAGGAGGATGTGTGA..........................................................................................................................................2040.751.00-------0.25----0.25----------0.25--------------------------------------------------------------------
............................................................................................TGAGGGAGGAGGATGTGTG...........................................................................................................................................1940.751.00------0.25--0.25---------------0.25------------------------------------------------------------------
............................................................................................TGAGGGAGGAGGATGTGGGG..........................................................................................................................................2040.751.00--------0.25----------------------------------------0.25---------------------------------------0.25--
............................................................................................TGAGGGAGGAGGATGTGTAGA.........................................................................................................................................2140.501.00--------0.25--0.25--------------------------------------------------------------------------------
............................................................................................TGAGGGAGGAGGATGTGGG...........................................................................................................................................1940.501.00-------------------------------------0.50------------------------------------------------------
..................AGGCCGTGCAGAACAAAG......................................................................................................................................................................................................................1820.500.50--------------------------------------------------0.50-----------------------------------------
............................................................................................TGAGGGAGGAGGATGTGTA...........................................................................................................................................1940.501.00--------------------0.25-----0.25-----------------------------------------------------------------
............................................................................................TGAGGGAGGAGGATGTGTTAT.........................................................................................................................................2140.501.00----0.50---------------------------------------------------------------------------------------
............................................................................................TGAGGGAGGAGGATGTGTTTT.........................................................................................................................................2140.251.00---------------0.25----------------------------------------------------------------------------
............................................................................................TGAGGGAGGAGGATGTGGTGG.........................................................................................................................................2140.251.000.25-------------------------------------------------------------------------------------------
............................................................................................TGAGGGAGGAGGATGTGGGTT.........................................................................................................................................2140.251.00--------------------------------------0.25-----------------------------------------------------
............................................................................................TGAGGGAGGAGGATGTGTGGC.........................................................................................................................................2140.251.00-------------------------------------------------------------------------------------------0.25
............................................................................................TGAGGGAGGAGGATGTGTCGT.........................................................................................................................................2140.251.00-0.25------------------------------------------------------------------------------------------
............................................................................................TGAGGGAGGAGGATGTGTAGC.........................................................................................................................................2140.251.00----0.25---------------------------------------------------------------------------------------
............................................................................................TGAGGGAGGAGGATGTGTTGG.........................................................................................................................................2140.251.00-------0.25------------------------------------------------------------------------------------
............................................................................................TGAGGGAGGAGGATGTGTGGA.........................................................................................................................................2140.251.00-------------------0.25------------------------------------------------------------------------
............................................................................................TGAGGGAGGAGGATGTGTCG..........................................................................................................................................2040.251.00---------------------------------------------------------------------------------------0.25----
............................................................................................TGAGGGAGGAGGATGTGTGGG.........................................................................................................................................2140.251.00--------------------------------------------------------------------------------------0.25-----
............................................................................................TGAGGGAGGAGGATGTGTTGA.........................................................................................................................................2140.251.00------------------0.25-------------------------------------------------------------------------
............................................................................................TGAGGGAGGAGGATGTGTGTG.........................................................................................................................................2140.251.00---0.25----------------------------------------------------------------------------------------
............................................................................................TGAGGGAGGAGGATGTGGAGT.........................................................................................................................................2140.251.00-----0.25--------------------------------------------------------------------------------------
............................................................................................TGAGGGAGGAGGATGTGTC...........................................................................................................................................1940.251.00---0.25----------------------------------------------------------------------------------------
............................................................................................TGAGGGAGGAGGATGTGTTG..........................................................................................................................................2040.251.00----------------------0.25---------------------------------------------------------------------
............................................................................................TGAGGGAGGAGGATGTGTACT.........................................................................................................................................2140.251.00----0.25---------------------------------------------------------------------------------------
............................................................................................TGAGGGAGGAGGATGTGGAG..........................................................................................................................................2040.251.00----0.25---------------------------------------------------------------------------------------
............................................................................................TGAGGGAGGAGGATGTGTATG.........................................................................................................................................2140.251.000.25-------------------------------------------------------------------------------------------
............................................................................................TGAGGGAGGAGGATGTGTGT..........................................................................................................................................2040.251.00----------------------0.25---------------------------------------------------------------------

Antisense strand
CTCCTCTTCCCCACAGCAAGGCCGTGCAGAACAAAGTAGAGGGGATCCTGGTAAGTGTGTTGGGGAAGAGGGCAAGAGAGGGATGGAAATGCTGAGGGAGGAGGATGTGAGGATGATGGGCATCAACAAAACATTGATGTGGGAGAGGTAGGGTCCTCTGCCTTGTCAGAAGATAGTTGGCTTTGCAAACTTGCTGCCAGTTTGACTTTGTGCCTCTCACTTGATCTCTGTGAGCACTTGCATAGAAGCC
.........................................................................................((((..........(((((...((((.....))))......)))))...........))))....................................................................................................
.......................................................................................88............................................................150..................................................................................................
SizePerfect hitTotal NormPerfect NormSRR189782SRR060986(GSM569190)
Human memory B cell [09-001]. (cell line)		SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		TAX577742(Rovira)
total RNA. (breast)		TAX577580(Rovira)
total RNA. (breast)		SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577453(Rovira)
total RNA. (breast)		SRR189784SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR029128(GSM416757)
H520. (cell line)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577743(Rovira)
total RNA. (breast)		TAX577588(Rovira)
total RNA. (breast)		GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		GSM450604(GSM450604)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577590(Rovira)
total RNA. (breast)		GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577738(Rovira)
total RNA. (breast)		GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)		GSM450607(GSM450607)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR189787SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		TAX577739(Rovira)
total RNA. (breast)		GSM450600(GSM450600)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577744(Rovira)
total RNA. (breast)		SRR039637(GSM518474)
THP1_total_sRNAs. (cell line)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)		SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		SRR189783SRR330910(SRX091748)
tissue: normal skindisease state: normal. (skin)		SRR033710(GSM497055)
GCB DLBCL (GCB385). (B cell)		TAX577740(Rovira)
total RNA. (breast)		SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)		TAX577741(Rovira)
total RNA. (breast)		SRR029131(GSM416760)
MCF7. (cell line)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		TAX577746(Rovira)
total RNA. (breast)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR060985(GSM569189)
Human naive B cell [09-001]. (cell line)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR343334DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)		SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		GSM532883(GSM532883)
G871N. (cervix)		SRR191607(GSM715717)
192genomic small RNA (size selected RNA from . (breast)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR033724(GSM497069)
L428 cell line (L428). (B cell)		SRR207118(GSM721080)
RRP40 knockdown. (RRP40 cell line)		GSM956925PazD5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)		SRR189785SRR444067(SRX128915)
Sample 24cDNABarcode: AF-PP-340: ACG CTC TTC . (cell line)		SRR039636(GSM518473)
THP1_cyto_sRNAs. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)		SRR029127(GSM416756)
A549. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR015448(SRR015448)
cytoplasmic small RNAs. (breast)		SRR037940(GSM510478)
293cand5_rep2. (cell line)		SRR553576(SRX182782)
source: Testis. (testes)		TAX577579(Rovira)
total RNA. (breast)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR037939(GSM510477)
293cand5_rep1. (cell line)		GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		TAX577589(Rovira)
total RNA. (breast)		SRR040018(GSM532903)
G701N. (cervix)		SRR040028(GSM532913)
G026N. (cervix)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		GSM450597(GSM450597)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577745(Rovira)
total RNA. (breast)
...CTCTTCCCCACAGCAAACTG................................................................................................................................................................................................................................... 202.000.00-----------------------------------------------------------------------1.00--1.00-----------------
........................................................................................................................................................TCTGACAAGGCAGAGGAC................................................................................ 1811.001.00-----------------------------------------------1.00--------------------------------------------
...................................................................................................................................CCTCTCCCACATCAATG...................................................................................................... 1711.001.00------------------------------------------------------1.00-------------------------------------
.............................AGGATCCCCTCTACTTTGTT......................................................................................................................................................................................................... 2011.001.00---------------------------------------------------------------1.00----------------------------
...............................................................GGAAGAGGGCAAGAGAGTT........................................................................................................................................................................ 191.000.00-------------1.00------------------------------------------------------------------------------