ID: uc001evk.1_intron_10_0_chr1_150686598_r
GENE: (4)
chr1:150686548-150687140-


(1)
AGO1.ip 		(1)
AGO1.ip OTHER.mut 		(1)
BRAIN 		(3)
BREAST 		(17)
CELL-LINE 		(1)
CERVIX 		(1)
LIVER 		(2)
OTHER 		(5)
SKIN 		(1)
UTERUS

Sense strand
ATACTGAGAGAAGATAAAAATTGCCCAGGATCTACACAGTTAGTGAAATGGCAAGTAAAAGAATACCTAAAGAGAGAAAATTATTTTTTTCTCATTTTACTTTTTTTTGTACCTTGGATACCTTTGGTGTTTAACCAAATTTTAGTGAATCACCCTTTAATGCTAGATAGCATTTTTGTAGGTCATTAAATTTTCCACCGAAGTTTTCCTCTCCTTGAAGTCTGGGTATTTGGAAAAATAAATTTTAAAAATAAATGTTTCTTTATTTTGTGCCCCATGCAAGCAGGCTTTATTTATTTTATTATTGTTCCCCACAAATAGCTGTCAGATATTTTGTATTTTCCCTTCCATCTCTATCATCATTTTACATTTCTGCCACATTGTTTTTTATGTTTTGTCTTGTTTTAAGCTAGTTAATAAGAAGGGAGCTTTAATAAGACATTTTTGTATTATTTAGTAATGAGATAATATGGAAATTTATGAAAATAACTATTTTCTGGAAATGCATTCAGTCTAAAAATGAATCCTTGATTTTTTTTTTAGGATGCTAGGATGTTATGATGCTTTACAGAAAAAATATGTAAGTCTTGCAA
...............................................................................................................................................................................................................................................................................................................................................................................(((((((........((((((((((...(((((((((..(((((..((.......))..))))).)))))))))((((..((((((((.......))))))))..))))..))))))))..))........)))))))........(((((((.(((((...)))))..)))))))..................................................
..............................................................................................................................................................................................................................................................................................................................................................351.............................................................................................................................................................................................543................................................
SizePerfect hitTotal NormPerfect NormSRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR029131(GSM416760)
MCF7. (cell line)		SRR037932(GSM510470)
293cand4_rep1. (cell line)		SRR330909(SRX091747)
tissue: normal skindisease state: normal. (skin)		SRR330857(SRX091695)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189785SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189784SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR029127(GSM416756)
A549. (cell line)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189787SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR037937(GSM510475)
293cand2. (cell line)		SRR029128(GSM416757)
H520. (cell line)		SRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		TAX577742(Rovira)
total RNA. (breast)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		TAX577579(Rovira)
total RNA. (breast)		SRR029130(GSM416759)
DLD2. (cell line)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		TAX577738(Rovira)
total RNA. (breast)		SRR040035(GSM532920)
G001T. (cervix)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR029125(GSM416754)
U2OS. (cell line)
...................................................................................................................................................................................................................................................................................................................................................................ATCATCATTTTACATTTCTATTA.......................................................................................................................................................................................................................233472.000.002742.00622.0018.0027.0031.0025.001.003.00----1.00---------1.00----1.00------
...................................................................................................................................................................................................................................................................................................................................................................ATCATCATTTTACATTTCTATT........................................................................................................................................................................................................................22232.000.00175.0031.002.002.005.001.0010.003.00----1.001.001.00-------------------
...................................................................................................................................................................................................................................................................................................................................................................ATCATCATTTTACATTTCTATGA.......................................................................................................................................................................................................................23179.000.00155.008.004.006.002.001.00--------1.00---1.00-------1.00-------
...................................................................................................................................................................................................................................................................................................................................................................ATCATCATTTTACATTTCTATTT.......................................................................................................................................................................................................................23173.000.00129.0037.004.00-1.00-------1.001.00--------------------
...................................................................................................................................................................................................................................................................................................................................................................ATCATCATTTTACATTTCTAT.........................................................................................................................................................................................................................2128.000.006.005.0011.004.00---1.00---------------------1.00----
...................................................................................................................................................................................................................................................................................................................................................................ATCATCATTTTACATTTCTATG........................................................................................................................................................................................................................2214.000.0010.00-3.001.00------------------------------
...................................................................................................................................................................................................................................................................................................................................................................ATCATCATTTTACATTTCTATCA.......................................................................................................................................................................................................................2313.000.005.002.00-3.00-1.001.001.00--------------------------
.....................................................................................................................................................................................................................................................................................................................................................................CATCATTTTACATTTCTATTA.......................................................................................................................................................................................................................2110.000.009.001.00--------------------------------
...................................................................................................................................................................................................................................................................................................................................................................ATCATCATTTTACATTTCTATAT.......................................................................................................................................................................................................................239.000.005.004.00--------------------------------
...................................................................................................................................................................................................................................................................................................................................................................ATCATCATTTTACATTTCTCTTA.......................................................................................................................................................................................................................237.000.006.00---1.00-----------------------------
...................................................................................................................................................................................................................................................................................................................................................................ATCATCATTTTACATTTCTATGT.......................................................................................................................................................................................................................237.000.006.00-1.00-------------------------------
...................................................................................................................................................................................................................................................................................................................................................................ATCATCATTTTACATTTCTCTGA.......................................................................................................................................................................................................................236.000.006.00---------------------------------
...................................................................................................................................................................................................................................................................................................................................................................ATCATCATTTTACATTTCTATC........................................................................................................................................................................................................................226.000.003.002.00-1.00------------------------------
......................................................................................................................................................................................................................................................................................................................................................................ATCATTTTACATTTCTATGA.......................................................................................................................................................................................................................205.000.001.00----------2.00---2.00------------------
...................................................................................................................................................................................................................................................................................................................................................................ATCATCATTTTACATTTCTATA........................................................................................................................................................................................................................225.000.002.002.00----1.00---------------------------
...................................................................................................................................................................................................................................................................................................................................................................ATCATCATTTTACATTTCTATAA.......................................................................................................................................................................................................................234.000.003.001.00--------------------------------
...................................................................................................................................................................................................................................................................................................................................................................ATCATCATTTTACATTTCTATCT.......................................................................................................................................................................................................................233.000.002.00----1.00----------------------------
.....................................................................................................................................................................................................................................................................................................................................................................CATCATTTTACATTTCTATT........................................................................................................................................................................................................................202.000.00------2.00---------------------------
...................................................................................................................................................................................................................................................................................................................................................................ATCATCATTTTACATTTC............................................................................................................................................................................................................................1812.002.00--1.001.00------------------------------
...................................................................................................................................................................................................................................................................................................................................................................ATCATCATTTTACATTTCCATT........................................................................................................................................................................................................................2212.002.00-----1.001.00---------------------------
...................................................................................................................................................................................................................................................................................................................................................................ATCATCATTTTACATTTCTAGTA.......................................................................................................................................................................................................................232.000.002.00---------------------------------
...................................................................................................................................................................................................................................................................................................................................................................ATCATCATTTTACATTTCTACTA.......................................................................................................................................................................................................................232.000.001.00-----1.00---------------------------
...................................................................................................................................................................................................................................................................................................................................................................ATCATCATTTTACATGTCT...........................................................................................................................................................................................................................191.000.001.00---------------------------------
...................................................................................................................................................................................................................................................................................................................................................................ATCATCATTTTACATTTCTAA.........................................................................................................................................................................................................................211.000.00------1.00---------------------------
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCTTGATTTTTTTTTTTGG.................................................211.000.00---------1.00------------------------
...................................................................................................................................................................................................................................................................................................................................................................ATCATCATTTTACATTTCTATCC.......................................................................................................................................................................................................................231.000.00-1.00--------------------------------
...........................................................................................................................................................................................................................................................................................................................................................................................ATTGTTTTTTATGTTTTATCC.................................................................................................................................................................................................211.000.00--------1.00-------------------------
...................................................................................................................................................................................................................................................................................................................................................................ATCATCATTTTACATTTCTA..........................................................................................................................................................................................................................201.000.00--1.00-------------------------------
...................................................................................................................................................................................................................................................................................................................................................................ATCATCATTTTACATCGGT...........................................................................................................................................................................................................................191.000.00------------------------1.00---------
...................................................................................................................................................................................................................................................................................................................................................................ATCATCATTTTACATTTCTTTTA.......................................................................................................................................................................................................................231.000.001.00---------------------------------
...................................................................................................................................................................................................................................................................................................................................................................ATCATCATTTTACATTTCTCTT........................................................................................................................................................................................................................221.000.001.00---------------------------------
...........................................................................................................................................................................................................................................................................................................................................................................................ATTGTTTTTTATGTTTTGGGTG................................................................................................................................................................................................221.000.00---------1.00------------------------
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAGATAATATGGAACGTT..................................................................................................................201.000.00-------------------------------1.00--
...................................................................................................................................................................................................................................................................................................................................................................ATCATCATTTTACATTTCTAGG........................................................................................................................................................................................................................221.000.001.00---------------------------------
...................................................................................................................................................................................................................................................................................................................................................................ATCATCATTTTACATTTCTAATA.......................................................................................................................................................................................................................231.000.00----1.00-----------------------------
...........................................................................................................................................................................................................................................................................................................................................TTTTGTATTTTCCCTTAACG..................................................................................................................................................................................................................................................201.000.00--------1.00-------------------------
...................................................................................................................................................................................................................................................................................................................................................................ATCATCATTTTACATGGC............................................................................................................................................................................................................................181.000.00-------------------1.00--------------
...................................................................................................................................................................................................................................................................................................................................................................ATCATCATTTTACATTTCTAGGA.......................................................................................................................................................................................................................231.000.001.00---------------------------------
...................................................................................................................................................................................................................................................................................................................................................................ATCATCATTTTACATTTCTGTTA.......................................................................................................................................................................................................................231.000.00---------------------------------1.00
.................................................................................................................................TTTAACCAAATTTTACTTA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................191.000.00----------1.00-----------------------
...................................................................................................................................................................................................................................................................................................................................................................ATCATCATTTTACATTTCTACTT.......................................................................................................................................................................................................................231.000.00--1.00-------------------------------
........................................................................................................................................................................................................................................................................................................................................................................................................TTTTGTCTTGTTTTACTTC......................................................................................................................................................................................191.000.00--------1.00-------------------------
............................................................................................CATTTTACTTTTTTTTCGG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................191.000.00---------1.00------------------------
...................................................................................................................................................................................................................................................................................................................................................................ATCATCATTTTACATTTCTAAT........................................................................................................................................................................................................................221.000.001.00---------------------------------
..........................................................................................................................................................................................................................................................................................................................CAAATAGCTGTCAGACTAT....................................................................................................................................................................................................................................................................191.000.00--------1.00-------------------------
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGCTAGGATGTTATGATG..............................2011.001.00----------------------------1.00-----
..........................................................................................................................................................................................TAAATTTTCCACCGAACCTA...................................................................................................................................................................................................................................................................................................................................................................................................201.000.00---------------------1.00------------
...................................................................................................................................................................................................................................................................................................................................................................ATCATCATTTTACATTTCTCGTA.......................................................................................................................................................................................................................231.000.001.00---------------------------------
...................................................................................................................................................................................................................................................................................................................................................................ATCATCATTTTACATTTCTAAAA.......................................................................................................................................................................................................................231.000.00----1.00-----------------------------
......................................................................................................................................................................................................................................................................................................................................................................................................TGTTTTGTCTTGTTTTCTCC.......................................................................................................................................................................................201.000.00---------1.00------------------------
...............................................................................ATTATTTTTTTCTCAGCCG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................191.000.00--------1.00-------------------------
...................................................................................................................................................................................................................................................................................................................................................................ATCATCATTTTACATTTCTATTC.......................................................................................................................................................................................................................231.000.001.00---------------------------------
...................................................................................................................................................................................................................................................................................................................................................................ATCATCATTTTACATTTCCAT.........................................................................................................................................................................................................................2111.002.00--1.00-------------------------------
...................................................................................................................................................................................................................................................................................................................................................................ATCATCATTTTACATTTCTATGC.......................................................................................................................................................................................................................231.000.00-1.00--------------------------------
...................................................................................................................................................................................................................................................................................................................................................................ATCATCATTTTACATTTCTATAC.......................................................................................................................................................................................................................231.000.001.00---------------------------------
......................................................................................................................................................................................................................................................................................................................CCCACAAATAGCTGTCAGAT.......................................................................................................................................................................................................................................................................2011.001.00-----------------------1.00----------
....................................................................................TTTTTTCTCATTTTACTTAAT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................211.000.00--------1.00-------------------------
...................................................................................................................................................................................................................................................................................................................................................................ATCATCATTTTACATTTCTAGT........................................................................................................................................................................................................................221.000.001.00---------------------------------
......................................................................................................................................................................................................................................................................................................................................................................................................TGTTTTGTCTTGTTTTCGTC.......................................................................................................................................................................................201.000.00---------1.00------------------------
....................................................................................................................................................................................................................................................................................................................................................................TCATCATTTTACATTTCTATTA.......................................................................................................................................................................................................................221.000.001.00---------------------------------
..............................................................................................................................................................................................................................................................................................................TATTGTTCCCCACAAATAGCTGTCAGA........................................................................................................................................................................................................................................................................2711.001.00-------------------------1.00--------
.....................................................................................................TTTTTTTGTACCTTGCTT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................181.000.00--------------------1.00-------------
...................................................................................................................................................................................................................................................................................................................................................................ATCATCATTTTACATTTCTAGTT.......................................................................................................................................................................................................................231.000.001.00---------------------------------
......................................................................................................................................................................................................................................................................................................................................................................ATCATTTTACATTTCTATGT.......................................................................................................................................................................................................................201.000.00-----------1.00----------------------
..............................................................................................TTTTACTTTTTTTTGTAC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1850.200.20--------0.20-------------------------
...............................................................................................................................................................................................................................................................................................................................................................................................TTTTTTATGTTTTGTCT.................................................................................................................................................................................................1750.200.20--------0.20-------------------------

Antisense strand
ATACTGAGAGAAGATAAAAATTGCCCAGGATCTACACAGTTAGTGAAATGGCAAGTAAAAGAATACCTAAAGAGAGAAAATTATTTTTTTCTCATTTTACTTTTTTTTGTACCTTGGATACCTTTGGTGTTTAACCAAATTTTAGTGAATCACCCTTTAATGCTAGATAGCATTTTTGTAGGTCATTAAATTTTCCACCGAAGTTTTCCTCTCCTTGAAGTCTGGGTATTTGGAAAAATAAATTTTAAAAATAAATGTTTCTTTATTTTGTGCCCCATGCAAGCAGGCTTTATTTATTTTATTATTGTTCCCCACAAATAGCTGTCAGATATTTTGTATTTTCCCTTCCATCTCTATCATCATTTTACATTTCTGCCACATTGTTTTTTATGTTTTGTCTTGTTTTAAGCTAGTTAATAAGAAGGGAGCTTTAATAAGACATTTTTGTATTATTTAGTAATGAGATAATATGGAAATTTATGAAAATAACTATTTTCTGGAAATGCATTCAGTCTAAAAATGAATCCTTGATTTTTTTTTTAGGATGCTAGGATGTTATGATGCTTTACAGAAAAAATATGTAAGTCTTGCAA
...............................................................................................................................................................................................................................................................................................................................................................................(((((((........((((((((((...(((((((((..(((((..((.......))..))))).)))))))))((((..((((((((.......))))))))..))))..))))))))..))........)))))))........(((((((.(((((...)))))..)))))))..................................................
..............................................................................................................................................................................................................................................................................................................................................................351.............................................................................................................................................................................................543................................................
SizePerfect hitTotal NormPerfect NormSRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR029131(GSM416760)
MCF7. (cell line)		SRR037932(GSM510470)
293cand4_rep1. (cell line)		SRR330909(SRX091747)
tissue: normal skindisease state: normal. (skin)		SRR330857(SRX091695)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189785SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189784SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR029127(GSM416756)
A549. (cell line)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189787SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR037937(GSM510475)
293cand2. (cell line)		SRR029128(GSM416757)
H520. (cell line)		SRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		TAX577742(Rovira)
total RNA. (breast)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		TAX577579(Rovira)
total RNA. (breast)		SRR029130(GSM416759)
DLD2. (cell line)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		TAX577738(Rovira)
total RNA. (breast)		SRR040035(GSM532920)
G001T. (cervix)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR029125(GSM416754)
U2OS. (cell line)
.......................................................................................................................................................................................................................................GGAAAAATAAATTTTAAAACT..................................................................................................................................................................................................................................................................................................................................................... 211.000.00----------------1.00-----------------
...................................................................................................................................................................................................................................ATTTGGAAAAATAAATCAAT.......................................................................................................................................................................................................................................................................................................................................................... 201.000.00----------1.00-----------------------
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATATGGAAATTTATGAATTTG......................................................................................................... 221.000.00----------1.00-----------------------
..........................................................................................................................................................................................................................AGTCTGGGTATTTGGAAGAA................................................................................................................................................................................................................................................................................................................................................................... 201.000.00-----------------1.00----------------
......................................................................AGAGAGAAAATTATTTCTTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 201.000.00----------------1.00-----------------
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAATGAGATAATATACTT...................................................................................................................... 191.000.00------1.00---------------------------
...................................................................................CAAAAAAAAGTAAAATGAGAAAAAAA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 2611.001.00------------------------------1.00---
.......................................................................................................................................................................................................................................GGAAAAATAAATTTTAAAACTG.................................................................................................................................................................................................................................................................................................................................................... 221.000.00--------------------------------1.00-