ID: uc001euw.2_intron_7_0_chr1_150528042_f.3p
GENE: (8)
chr1:150528438-150528687+


(1)
AGO1.ip 		(1)
AGO1.ip OTHER.mut 		(1)
AGO3.ip 		(2)
BRAIN 		(3)
BREAST 		(16)
CELL-LINE 		(2)
CERVIX 		(1)
HELA 		(4)
LIVER 		(1)
OTHER 		(1)
RRP40.ip 		(25)
SKIN 		(1)
XRN.ip

Sense strand
CTGCGCTGAGCAGAGCCTGAAGGATCTGATCGGGCACCTGTCCATGTCCCTGGGTCTGGCTGGGGATGGTGGGGCTGTTTTTGTGCTCTCACTTGTGGCACAAAAAGCAGGGTAGTGAGCTGAGGCTCCCGAGGGGACCGGGGTGGGGTTGAGGTGGTGTCTGGCGTTCTGTGGCCACTGCCTCACCTCACTCTCTCCAGAGCCCCGGCTGTGATGGGATCCTTGGCTCTGGCAGGCGTCCTGATGGCTG
....................................................................................................................................(((((...((((((((.(((((..((....(((........)))))..))))))))))))))))))....................................................
................................................................................................................................129....................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR189787SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)		TAX577743(Rovira)
total RNA. (breast)		SRR040042(GSM532927)
G428N. (cervix)		GSM359208(GSM359208)
hepg2_bindASP_hl_2. (cell line)		SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		SRR189784SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)		SRR330881(SRX091719)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR040010(GSM532895)
G529N. (cervix)		SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191576(GSM715686)
86genomic small RNA (size selected RNA from t. (breast)		SRR444058(SRX128906)
Sample 16cDNABarcode: AF-PP-335: ACG CTC TTC . (skin)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		GSM416733(GSM416733)
HEK293. (cell line)		TAX577740(Rovira)
total RNA. (breast)		SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)		SRR037931(GSM510469)
293GFP. (cell line)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR037941(GSM510479)
293DroshaTN. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		GSM1105750AGO3(GSM1105750)
small RNA sequencing data. (ago3 hela)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)		GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
.....................................................................................................................................GGGACCGGGGTGGGGAACC..................................................................................................194.000.00----------2.00------------1.00-------------------1.00------------
...............................................................................................................................................................................CACTGCCTCACCTCACTCTCT......................................................2113.003.00--------------------------1.001.00-----------1.00----------------
.........................................................................................................................................CCGGGGTGGGGTTGAGGTGGTG...........................................................................................2213.003.002.001.00------------------------------------------------------
.........................................................................................................................................CCGGGGTGGGGTTGAGGTGGGG...........................................................................................2212.002.002.00-------------------------------------------------------
....................................................................................................CAAAAAGCAGGGTAGTGAGCTGAGGCTC..........................................................................................................................2812.002.00--------------------------------1.00--1.00--------------------
.........................................................................................................................................CCGGGGTGGGGTTGAGGTGG.............................................................................................2012.002.00-1.00---------------------------1.00--------------------------
...............................................................................................................................................................................CACTGCCTCACCTCACTC.........................................................1812.002.00--2.00-----------------------------------------------------
.........................................................................................................................................CCGGGGTGGGGTTGAGGTGGAAGT.........................................................................................2412.002.00----2.00---------------------------------------------------
........................................................TGGCTGGGGATGGTGGGGCTGTTTTTGT......................................................................................................................................................................2812.002.00-----2.00--------------------------------------------------
.........................................................................................................................................CCGGGGTGGGGTTGAGGTGGT............................................................................................2112.002.00---2.00----------------------------------------------------
..............................................................................................................................................................................CCACTGCCTCACCTCACTCTCT......................................................2212.002.00-----1.00--------------------------------------------1.00-----
......................................................................................................................................................................................................AGAGCCCCGGCTGTGGAC..................................181.000.00-----------1.00--------------------------------------------
...........................................ATGTCCCTGGGTCTGAAGA............................................................................................................................................................................................191.000.00------------------------------------1.00-------------------
........................................................................................................................................ACCGGGGTGGGGTTGAGGTGGGG...........................................................................................2311.001.001.00-------------------------------------------------------
.......................................................CTGGCTGGGGATGGTGGGAC...............................................................................................................................................................................201.000.00--------1.00-----------------------------------------------
...................................................................................................................................AGGGGACCGGGGTGGGGACCC..................................................................................................211.000.00-----------1.00--------------------------------------------
.................................................................................................................................................................................CTGCCTCACCTCACTCTCTCCAGTA................................................2511.001.00---------------------------------------------1.00----------
...............................................................................................................................................................................CACTGCCTCACCTCACTCTCTCT....................................................231.000.00----1.00---------------------------------------------------
..................................................................................................................................................................................................................GTGATGGGATCCTTGGCTCTG...................2111.001.00-1.00------------------------------------------------------
....................................................................................................................................................TTGAGGTGGTGTCTGGCGTTAT................................................................................221.000.00-------------------------------1.00------------------------
.......................................................................................................................................GACCGGGGTGGGGTTGTTTT...............................................................................................201.000.00-------------1.00------------------------------------------
....................................................GGTCTGGCTGGGGATGGTG...................................................................................................................................................................................1911.001.00------------------1.00-------------------------------------
..........................................................................................................................................................................................................................ATCCTTGGCTCTGGCAGGCGTCCTG.......2511.001.00--1.00-----------------------------------------------------
........................................................................................................................................ACCGGGGTGGGGTTGAGGTG..............................................................................................2011.001.00---------------1.00----------------------------------------
..............................................................................................................................................................................CCACTGCCTCACCTCACTCTCTC.....................................................2311.001.00-------1.00------------------------------------------------
.......................................................................................................................................................................................................................GGGATCCTTGGCTCTGGCAGGCGTT..........251.000.00--1.00-----------------------------------------------------
..............................................................................................................................................................................CCACTGCCTCACCTCACTCT........................................................2011.001.00-------------------------------------1.00------------------
.......................................................................................................................................................................................................................GGGATCCTTGGCTCTGGCAGGCGTCCT........2711.001.00---------1.00----------------------------------------------
...................................ACCTGTCCATGTCCCCCC.....................................................................................................................................................................................................181.000.00--------------------------------------1.00-----------------
..............................................................................................................................................................................CCACTGCCTCACCTCACTCTC.......................................................2111.001.00----------------------1.00---------------------------------
........................................................................................................................................ACCGGGGTGGGGTTGAGGTGG.............................................................................................2111.001.00---1.00----------------------------------------------------
..........................................................................................................................................................................GTGGCCACTGCCTCACCTCACTCTCTCCAGA.................................................3111.001.00--------------------1.00-----------------------------------
...............................................................................................................................................................................CACTGCCTCACCTCACTCTCTCA....................................................231.000.00--------------------------------------------1.00-----------
......................................................................................................AAAAGCAGGGTAGTGAGGGC................................................................................................................................201.000.00---------------------------------1.00----------------------
...............................................................................................................................................................................CACTGCCTCACCTCATCCA........................................................191.000.00-----------------1.00--------------------------------------
..........................................................................................................................................CGGGGTGGGGTTGAGGTGGTGTCT........................................................................................2411.001.00----------------------------------1.00---------------------
...........................................................................................................................................................................................................CCCGGCTGTGATGGGATCCTTGGC.......................2411.001.00----------------------------------------------1.00---------
..............................................................................................................................................................................CCACTGCCTCACCTCACTCTCA......................................................2211.001.00------------------------------------------------1.00-------
.............................................................................................................................................GGTGGGGTTGAGGTGGTGTTT........................................................................................211.000.00-1.00------------------------------------------------------
............................................................................................................................................................................................................................CCTTGGCTCTGGCAGGCGTCCTGAT.....2511.001.00----------------1.00---------------------------------------
.........................................................................................................................................CCGGGGTGGGGTTGAGGTGGTGT..........................................................................................2311.001.00------1.00-------------------------------------------------
...............................................................................................................................................................................................................................TGGCTCTGGCAGGCGTCC.........1811.001.00------1.00-------------------------------------------------
.........................................................................................................................................CCGGGGTGGGGTTGAGGTGGTGTC.........................................................................................2411.001.00------------1.00-------------------------------------------
...............................................................................................................................................................................CACTGCCTCACCTCACTCTCC......................................................211.000.00-------1.00------------------------------------------------
...............................................................................................................................................................................................................................TGGCTCTGGCAGGCGTCCTG.......2011.001.00-----------------------------------------------1.00--------
.................................................................................................................................................................................CTGCCTCACCTCACTCTCTCCAGA.................................................2411.001.00------------------------------------------1.00-------------
........................................................................................................................................................................................................AGCCCCGGCTGTGATGGGAT..............................2011.001.00---------1.00----------------------------------------------
........................................................................................................................................ACCGGGGTGGGGTTGAGGTGGT............................................................................................2211.001.00-1.00------------------------------------------------------
..............................................................................................................................................................................CCACTGCCTCACCTCACTCTCTCCA...................................................2511.001.00------------------------1.00-------------------------------
..........................................................................CTGTTTTTGTGCTCTGCGG.............................................................................................................................................................191.000.00---------------------------------------------------1.00----
.........................................................GGCTGGGGATGGTGGGAC...............................................................................................................................................................................181.000.00--------1.00-----------------------------------------------
.................................................................................................................................................................................CTGCCTCACCTCACTCTCTCCAG..................................................2311.001.00-------------------1.00------------------------------------
............................................................................................................................................GGGTGGGGTTGAGGTGGT............................................................................................1820.500.50---0.50----------------------------------------------------
......TGAGCAGAGCCTGAAGGA..................................................................................................................................................................................................................................1820.500.50-----------------------------------------------------0.50--
......................................................TCTGGCTGGGGATGGT....................................................................................................................................................................................1680.120.12-------------------------------------------------------0.12

Antisense strand
CTGCGCTGAGCAGAGCCTGAAGGATCTGATCGGGCACCTGTCCATGTCCCTGGGTCTGGCTGGGGATGGTGGGGCTGTTTTTGTGCTCTCACTTGTGGCACAAAAAGCAGGGTAGTGAGCTGAGGCTCCCGAGGGGACCGGGGTGGGGTTGAGGTGGTGTCTGGCGTTCTGTGGCCACTGCCTCACCTCACTCTCTCCAGAGCCCCGGCTGTGATGGGATCCTTGGCTCTGGCAGGCGTCCTGATGGCTG
....................................................................................................................................(((((...((((((((.(((((..((....(((........)))))..))))))))))))))))))....................................................
................................................................................................................................129....................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR189787SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)		TAX577743(Rovira)
total RNA. (breast)		SRR040042(GSM532927)
G428N. (cervix)		GSM359208(GSM359208)
hepg2_bindASP_hl_2. (cell line)		SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		SRR189784SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)		SRR330881(SRX091719)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR040010(GSM532895)
G529N. (cervix)		SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191576(GSM715686)
86genomic small RNA (size selected RNA from t. (breast)		SRR444058(SRX128906)
Sample 16cDNABarcode: AF-PP-335: ACG CTC TTC . (skin)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		GSM416733(GSM416733)
HEK293. (cell line)		TAX577740(Rovira)
total RNA. (breast)		SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)		SRR037931(GSM510469)
293GFP. (cell line)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR037941(GSM510479)
293DroshaTN. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		GSM1105750AGO3(GSM1105750)
small RNA sequencing data. (ago3 hela)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)		GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
.................................AGACCCAGGGACATGGACAGGTGC................................................................................................................................................................................................. 2411.001.00----------------------------------------1.00---------------
...............................................................................................................................................................................CACTGCCTCACCTCATAGC........................................................ 191.000.00-------------------------1.00------------------------------
..................................CACCTGTCCATGTCCACC...................................................................................................................................................................................................... 181.000.00-------------------------------------------------1.00------
......................CATGGACAGGTGCCCGATCAGATC............................................................................................................................................................................................................ 2411.001.00------------1.00-------------------------------------------
..........................................................................CTGTTTTTGTGCTCTCAAAA............................................................................................................................................................ 201.000.00-----------------------------------------1.00--------------
.......................................GTCCATGTCCCTGGGGGC................................................................................................................................................................................................. 181.000.00---------------------1.00----------------------------------
...............................................................................................................................................................................CACTGCCTCACCTCATAG......................................................... 181.000.00-------------1.00------------------------------------------
.............................................GTCCCTGGGTCTGGCTGCCA......................................................................................................................................................................................... 201.000.00----------------------------1.00---------------------------
......................................................TCTGGCTGGGGATGGTGTA................................................................................................................................................................................. 191.000.00------------------------------1.00-------------------------
.................................................................................................GCACAAAAAGCAGGGTAGTT..................................................................................................................................... 201.000.00--------------1.00-----------------------------------------
..............................................................................................................................................................................................CGGGGCTCTGGAGAGAG........................................... 1740.500.50----------------------------------------------------0.50---
..............................................CAGCCAGACCCAGGGA............................................................................................................................................................................................ 1650.200.20------------------------------------------------------0.20-