ID: uc001ety.1_intron_2_0_chr1_150239603_r
GENE: (4)
chr1:150239553-150239805-


(2)
AGO2.ip
(6)
B-CELL
(2)
BRAIN
(6)
BREAST
(14)
CELL-LINE
(1)
CERVIX
(5)
HEART
(1)
HELA
(4)
LIVER
(4)
OTHER
(9)
SKIN
(3)
UTERUS
(1)
XRN.ip

Sense strand
AGGTGTGGTTGGGATCCATGGAGACTCACCCTATTACTTCCTGACTTCAGGTAAGATCCACCTTCTATCTAGCCTTTACCCCCCATCCATCCTTGTCCCTGATCTGATTTATTGGCCTTCCCTGAGAGACTTCTTTGGCTCAACATCTCAGGAGCCTGGGAGAAGATCAGGGATGTATCTCCTCCCCATCTCCCTCCCTGCAGCCTTTCTGACAGCAGCCATTATCCTGCTCCATACCTTTTGGGGAGTTGTG
......................................................................................................................................................((((...(((((.((((((....)).)))).)))))...))))............................................................
...................................................................................................................................................148....................................................203................................................
SizePerfect hitTotal NormPerfect NormSRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR037937(GSM510475)
293cand2. (cell line)
DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)
SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)
SRR029127(GSM416756)
A549. (cell line)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)
SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR343334SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)
SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR191605(GSM715715)
76genomic small RNA (size selected RNA from t. (breast)
SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)
SRR189784SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)
SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)
SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)
SRR037935(GSM510473)
293cand3. (cell line)
SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)
SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR191566(GSM715676)
94genomic small RNA (size selected RNA from t. (breast)
DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
SRR343333(GSM796036)
KSHV (HHV8). (cell line)
SRR040008(GSM532893)
G727N. (cervix)
SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)
SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)
SRR191624(GSM715734)
31genomic small RNA (size selected RNA from t. (breast)
DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR343335SRR038860(GSM458543)
MM426. (cell line)
SRR189786GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR191602(GSM715712)
60genomic small RNA (size selected RNA from t. (breast)
TAX577744(Rovira)
total RNA. (breast)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR033723(GSM497068)
L1236 cell line (L1236). (B cell)
SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)
GSM359190(GSM359190)
HepG2_3pM_4. (cell line)
SRR207111(GSM721073)
Whole cell RNA. (cell line)
SRR444059(SRX128907)
Sample 17cDNABarcode: AF-PP-339: ACG CTC TTC . (skin)
SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)
SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)
........................................................................................................................................................AGCCTGGGAGAAGATCAGGGATG..............................................................................2319.009.00-4.00-----------1.00-------1.00-------------1.00-----1.00---1.00---------
......................................................................................................................................................................................TCCCCATCTCCCTCCCTGCAGT.................................................2218.003.00---2.00---1.00------1.00-------1.00-----------1.00--1.00--------1.00--------
......................................................................................................................................................................................TCCCCATCTCCCTCCCTGCAGA.................................................2217.003.00---2.004.00---------------------------------1.00----------------
....................................................................................................................................CTTTGGCTCAACATCTCAGGAGCCTGGGAGAAGATCAGGGATGTATCTCCTCCCCATCTCCCTCCCTGC....................................................6916.006.00--6.00----------------------------------------------------
...................................................................................................................................................TCAGGAGCCTGGGAGAAGATCAGGG.................................................................................2513.003.00--------3.00----------------------------------------------
......................................................................................................................................................................................TCCCCATCTCCCTCCCTGCAG..................................................2113.003.00--------------------1.00------1.00--------1.00------------------
...............................................................................................................................................................................................................................ATCCTGCTCCATACCTTTTGG.........2112.002.002.00------------------------------------------------------
......................................................................................................................................................................................TCCCCATCTCCCTCCCTGCA...................................................2012.002.00------------1.00----1.00-------------------------------------
...............CCATGGAGACTCACCCTATTA.........................................................................................................................................................................................................................2112.002.002.00------------------------------------------------------
...................................................................................................................................................................................TCCTCCCCATCTCCCTCCTCG.....................................................212.000.00----------2.00--------------------------------------------
.........TGGGATCCATGGAGACTCA.................................................................................................................................................................................................................................1912.002.00------2.00------------------------------------------------
........................................................................................................................................................AGCCTGGGAGAAGATCAGGATG...............................................................................222.000.00-2.00-----------------------------------------------------
..........................................................................................................................................................CCTGGGAGAAGATCAGGGATGTAT...........................................................................2412.002.00--------------------------1.00-----------------------1.00----
......................................................................................................................................................................................TCCCCATCTCCCTCCCTGCAGAA................................................2311.003.00---------------------------------1.00---------------------
..........GGGATCCATGGAGACTCA.................................................................................................................................................................................................................................1811.001.00--------------------------------------------1.00----------
................................ATTACTTCCTGACTTCAGC..........................................................................................................................................................................................................191.000.00-------1.00-----------------------------------------------
..................................................................................................................................................................................................................GACAGCAGCCATTATCCTG........................1911.001.00-----1.00-------------------------------------------------
..................................................................................CCATCCATCCTTGTCCTC.........................................................................................................................................................181.000.00---------1.00---------------------------------------------
........................................................................................................................................................................................................................AGCCATTATCCTGCTCCATACC...............2211.001.001.00------------------------------------------------------
................................ATTACTTCCTGACTTCAGCC.........................................................................................................................................................................................................201.000.00---------------------------------------1.00---------------
........................................................................................................................................................AGCCTGGGAGAAGATCAGGGAT...............................................................................2211.001.00------------------------------------------------1.00------
.........................................................................................................................................................................................................AGCCTTTCTGACAGCAGCCATTAT............................2411.001.00-----1.00-------------------------------------------------
..........GGGATCCATGGAGACTCACC...............................................................................................................................................................................................................................2011.001.00-----------1.00-------------------------------------------
.........................................................................................................................................................................................................................GCCATTATCCTGCTCCATACC...............2111.001.001.00------------------------------------------------------
..........GGGATCCATGGAGACAGC.................................................................................................................................................................................................................................181.000.00------------------------------1.00------------------------
......................GACTCACCCTATTACTTCCTGACTTCAGCCT........................................................................................................................................................................................................311.000.00---------1.00---------------------------------------------
...................................................................................................................................................TCAGGAGCCTGGGAGAAGAT......................................................................................2011.001.00--------------------------------1.00----------------------
..........................................................................................................................................................CCTGGGAGAAGATCAGGGATGTACC..........................................................................251.000.00------------------------------------------1.00------------
......................GACTCACCCTATTACTTCCTGACTT..............................................................................................................................................................................................................2511.001.00---------------1.00---------------------------------------
......................................................................................................................................................................................TCCCCATCTCCCTCCCTGCAGG.................................................2211.003.00-----------------------------------------------1.00-------
..GTGTGGTTGGGATCCATGGAGACTCAC................................................................................................................................................................................................................................2711.001.00-------------------------------1.00-----------------------
...........GGATCCATGGAGACTCACC...............................................................................................................................................................................................................................1911.001.00-----------------------------1.00-------------------------
.............................................................................................................................................................................................................TTTCTGACAGCAGCCATTA.............................1911.001.00------1.00------------------------------------------------
.........TGGGATCCATGGAGACT...................................................................................................................................................................................................................................1711.001.00----------------1.00--------------------------------------
.GGTGTGGTTGGGATCCATGGAGACT...................................................................................................................................................................................................................................2511.001.00-------------------------------------------1.00-----------
.........TGGGATCCATGGAGACTCAC................................................................................................................................................................................................................................2011.001.00-----------1.00-------------------------------------------
.............................................................................................................................................................................................................................................CTTTTGGGGAGTTGTGTTAC201.000.00-----1.00-------------------------------------------------
...............................TATTACTTCCTGACTTCAGC..........................................................................................................................................................................................................201.000.00-------1.00-----------------------------------------------
..GTGTGGTTGGGATCCATGGAA......................................................................................................................................................................................................................................211.000.00-------------1.00-----------------------------------------
.......................................................................................................................................................................................................................CAGCCATTATCCTGCTCCATACCTTCTG..........281.000.00-------------------1.00-----------------------------------
.....................................TTCCTGACTTCAGGTTTTG.....................................................................................................................................................................................................191.000.001.00------------------------------------------------------
.........TGGGATCCATGGAGACTC..................................................................................................................................................................................................................................1811.001.00------------------------1.00------------------------------
......................................................................................................................................................................................TCCCCATCTCCCTCCCTGTAGT.................................................221.000.00-----------------------1.00-------------------------------
.....................................................................................................................TTCCCTGAGAGACTTCTTTGGCT.................................................................................................................2311.001.00--------------1.00----------------------------------------
........................................................................................................................................................................................................................AGCCATTATCCTGCTCCATATA...............221.000.001.00------------------------------------------------------
..............................CTATTACTTCCTGACTTCAGC..........................................................................................................................................................................................................211.000.00----------------------------1.00--------------------------
.............................................................................................................................................................GGGAGAAGATCAGGGATG..............................................................................1811.001.00------------------1.00------------------------------------
..........GGGATCCATGGAGACTCAC................................................................................................................................................................................................................................1911.001.00-------------------------------------------------1.00-----
..........................................................................................................................................................CCTGGGAGAAGATCAGGGATGTCT...........................................................................241.000.00------------1.00------------------------------------------
........................................................................................................................................................AGCCTGGGAGAAGATCAG...................................................................................1830.670.67-----------------------------------------------------0.330.33
............................................................................................................................................................................................................................ATTATCCTGCTCCATACC...............1820.500.500.50------------------------------------------------------
........................................................................................................................................................AGCCTGGGAGAAGATCAGGG.................................................................................2020.500.50---------------------------------------------------0.50---
..............TCCATGGAGACTCACCC..............................................................................................................................................................................................................................1720.500.50----------------------------------------------------0.50--

Antisense strand
AGGTGTGGTTGGGATCCATGGAGACTCACCCTATTACTTCCTGACTTCAGGTAAGATCCACCTTCTATCTAGCCTTTACCCCCCATCCATCCTTGTCCCTGATCTGATTTATTGGCCTTCCCTGAGAGACTTCTTTGGCTCAACATCTCAGGAGCCTGGGAGAAGATCAGGGATGTATCTCCTCCCCATCTCCCTCCCTGCAGCCTTTCTGACAGCAGCCATTATCCTGCTCCATACCTTTTGGGGAGTTGTG
......................................................................................................................................................((((...(((((.((((((....)).)))).)))))...))))............................................................
...................................................................................................................................................148....................................................203................................................
SizePerfect hitTotal NormPerfect NormSRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR037937(GSM510475)
293cand2. (cell line)
DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)
SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)
SRR029127(GSM416756)
A549. (cell line)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)
SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR343334SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)
SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR191605(GSM715715)
76genomic small RNA (size selected RNA from t. (breast)
SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)
SRR189784SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)
SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)
SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)
SRR037935(GSM510473)
293cand3. (cell line)
SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)
SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR191566(GSM715676)
94genomic small RNA (size selected RNA from t. (breast)
DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
SRR343333(GSM796036)
KSHV (HHV8). (cell line)
SRR040008(GSM532893)
G727N. (cervix)
SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)
SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)
SRR191624(GSM715734)
31genomic small RNA (size selected RNA from t. (breast)
DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR343335SRR038860(GSM458543)
MM426. (cell line)
SRR189786GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR191602(GSM715712)
60genomic small RNA (size selected RNA from t. (breast)
TAX577744(Rovira)
total RNA. (breast)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR033723(GSM497068)
L1236 cell line (L1236). (B cell)
SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)
GSM359190(GSM359190)
HepG2_3pM_4. (cell line)
SRR207111(GSM721073)
Whole cell RNA. (cell line)
SRR444059(SRX128907)
Sample 17cDNABarcode: AF-PP-339: ACG CTC TTC . (skin)
SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)
SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)
.................................................................................................CCTGATCTGATTTATTCTAG........................................................................................................................................ 201.000.00----------------------------------------1.00--------------
.................................................................................................................................................................................................CTCCCTGCAGCCTTTCTAT......................................... 191.000.00-------------------------1.00-----------------------------