ID: uc001eoe.2_intron_4_0_chr1_145588471_r
GENE: (3)
chr1:145588421-145588659-


(1)
AGO2.ip
(6)
B-CELL
(1)
BRAIN
(2)
BREAST
(10)
CELL-LINE
(6)
HEART
(2)
HELA
(1)
LIVER
(3)
OTHER
(12)
SKIN
(1)
UTERUS
(1)
XRN.ip

Sense strand
CTACTGGCCCCACTGTTGTTGCAGGTGGGCACGTGGAACTTGAGGAGGAGGTAACCAGTCAGCTGATCCAACCTGAGCCAAGAGACCCATGCCTGGGACCATCTTGGGTGTGGGCTGAGGGAGGGGCAAGCAAAAGGACTTGGAAGAGTCAGGCACTGGCCCCTCTGATGTGTCTTCTCTGACTCCCAGCTGCTGGACGGAGGGCTTCGAGAACTTTGGGAGGAGAGTGGACTACACCT
.................................................................(((...(((.(((........(((((((..((.....))..)))))))))).)))(((((((..((.....(((((....)))))..))....))))))).)))......................................................................
................................................................65.........................................................................................................172.................................................................
SizePerfect hitTotal NormPerfect NormSRR189782SRR189784SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)
SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)
SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)
SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)
SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)
SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)
SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)
SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)
SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)
SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)
DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
GSM416733(GSM416733)
HEK293. (cell line)
TAX577740(Rovira)
total RNA. (breast)
SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
SRR037931(GSM510469)
293GFP. (cell line)
SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)
SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)
SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)
SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)
GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR033723(GSM497068)
L1236 cell line (L1236). (B cell)
SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)
SRR553574(SRX182780)
source: Heart. (Heart)
SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR444040(SRX128888)
Sample 1cDNABarcode: AF-PP-333: ACG CTC TTC C. (skin)
SRR444048(SRX128896)
Sample 8cDNABarcode: AF-PP-333: ACG CTC TTC C. (skin)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
....................................................................................................................................................TCAGGCACTGGCCCCTCCCG.......................................................................2020.000.0020.00---------------------------------------------
....................................................................................................................................................TCAGGCACTGGCCCCTCCCGA......................................................................217.000.007.00---------------------------------------------
....................................................................................................................................................TCAGGCACTGGCCCCTCCCGG......................................................................215.000.005.00---------------------------------------------
....................................................................................................................................................TCAGGCACTGGCCCCTCCAG.......................................................................204.000.004.00---------------------------------------------
....................................................................................................................................................TCAGGCACTGGCCCCTCTCG.......................................................................204.000.004.00---------------------------------------------
....................................................................................................................................................TCAGGCACTGGCCCCTTCTG.......................................................................203.000.003.00---------------------------------------------
....................................................................................................................................................TCAGGCACTGGCCCCTCCTTG......................................................................213.000.003.00---------------------------------------------
....................................................................................................................................................TCAGGCACTGGCCCCTCCCTG......................................................................213.000.003.00---------------------------------------------
................................................................................................................................AGCAAAAGGACTTGGAAGA............................................................................................1912.002.00----2.00-----------------------------------------
.....................................................................AACCTGAGCCAAGAGACCC.......................................................................................................................................................1912.002.00----------------------1.00--1.00--------------------
....................................................................................................................................................TCAGGCACTGGCCCCTCCCA.......................................................................202.000.002.00---------------------------------------------
....................................................................................................................................................TCAGGCACTGGCCCCTCTTGG......................................................................212.000.002.00---------------------------------------------
....................................................................................................................................................TCAGGCACTGGCCCCTTTCG.......................................................................202.000.002.00---------------------------------------------
....................................................................................................................................................TCAGGCACTGGCCCCTCTCGT......................................................................212.000.002.00---------------------------------------------
....................................................................................................................................................TCAGGCACTGGCCCCTACCG.......................................................................202.000.001.001.00--------------------------------------------
....................................................................................................................................................TCAGGCACTGGCCCCTTCCG.......................................................................202.000.002.00---------------------------------------------
....................................................................................................................................................TCAGGCACTGGCCCCTCTCGA......................................................................211.000.001.00---------------------------------------------
.....................................................................................................................................................................................ACTCCCAGCTGCTGGACGGAGGG...................................2311.001.00--------------1.00-------------------------------
....................................................................................................................................................TCAGGCACTGGCCCCTATAG.......................................................................201.000.001.00---------------------------------------------
...................TGCAGGTGGGCACGTGGCTAG.......................................................................................................................................................................................................211.000.00----------------1.00-----------------------------
...............................................................................................................................................................................................................CGAGAACTTTGGGAG.................1501.001.00---------------------1.00------------------------
....................................................................................................................................................TCAGGCACTGGCCCCTCCTTT......................................................................211.000.001.00---------------------------------------------
....................................................................................................................................................TCAGGCACTGGCCCCTTTAG.......................................................................201.000.001.00---------------------------------------------
.....................................................................................................................................................................................................................CTTTGGGAGGAGAGTGTAT.......191.000.001.00---------------------------------------------
...........................................................................................................................................................................................................GCTTCGAGAACTTTGGGAGGAGAG............2411.001.00--------------------------------1.00-------------
.............................................................................................................GTGGGCTGAGGGAGGGATTT..............................................................................................................201.000.00-------------------1.00--------------------------
..........................................................................................................................................................................................CAGCTGCTGGACGGAGGGC..................................1911.001.00--1.00-------------------------------------------
....................................................................................................................................................TCAGGCACTGGCCCCTCCAT.......................................................................201.000.001.00---------------------------------------------
..............................................................................................................................................................................................................TCGAGAACTTTGGGATGC...............181.000.00---------1.00------------------------------------
.................................TGGAACTTGAGGAGGAGC............................................................................................................................................................................................1821.000.50--------------------------1.00-------------------
....................................................................................................................................................TCAGGCACTGGCCCCTCTCGG......................................................................211.000.00-1.00--------------------------------------------
....................................................................................................................................................TCAGGCACTGGCCCCTCTCGGC.....................................................................221.000.001.00---------------------------------------------
..........................................................................................................................................................................................CAGCTGCTGGACGGAACG...................................181.000.00-------------1.00--------------------------------
....................................................................................................................................................TCAGGCACTGGCCCCTACAG.......................................................................201.000.001.00---------------------------------------------
...............................................................................................................................................................................................................CGAGAACTTTGGGAGGAGAGTGGACT......2611.001.00---------------1.00------------------------------
.......................................................................................................TTGGGTGTGGGCTGAGGG......................................................................................................................1811.001.00------------------1.00---------------------------
...............................................................................................................................................................................................GCTGGACGGAGGGCTTCGAGAACTTTG.....................2711.001.00-------1.00--------------------------------------
....................................................................................................................................................TCAGGCACTGGCCCCTCTTTG......................................................................211.000.001.00---------------------------------------------
............................GCACGTGGAACTTGAGGAGGAGG............................................................................................................................................................................................2311.001.00-------------------------------1.00--------------
..............................................................................................................TGGGCTGAGGGAGGGAGAA..............................................................................................................191.000.00----------------------------------1.00-----------
.......................................................................CCTGAGCCAAGAGACCCATGCCTGGGACC...........................................................................................................................................2911.001.00---1.00------------------------------------------
....................................................................................................................................................TCAGGCACTGGCCCCCAAG........................................................................191.000.001.00---------------------------------------------
....................................................................................................................................................TCAGGCACTGGCCCCTCTCGTT.....................................................................221.000.001.00---------------------------------------------
....................................................................................................................................................TCAGGCACTGGCCCCTTTTG.......................................................................201.000.001.00---------------------------------------------
..................................................................TCCAACCTGAGCCAAGAGAC.........................................................................................................................................................2011.001.00-----------1.00----------------------------------
.............................CACGTGGAACTTGAGGAGGAGGTA..........................................................................................................................................................................................2411.001.00--1.00-------------------------------------------
...........................................................................................................................................................................................................GCTTCGAGAACTTTGGGAAAA...............211.000.00------------------------------------1.00---------
........................................................................................................................GAGGGGCAAGCAAAAATTA....................................................................................................191.000.00-1.00--------------------------------------------
....................................................................................................................................................TCAGGCACTGGCCCCTTTC........................................................................191.000.001.00---------------------------------------------
....................................................................................................................................................TCAGGCACTGGCCCCTCCTG.......................................................................201.000.00-1.00--------------------------------------------
......................................................................................................................................AGGACTTGGAAGAGTCAGGC.....................................................................................2011.001.00-----------------------------1.00----------------
....................................................................................................................................AAAGGACTTGGAAGAGAT.........................................................................................181.000.00--------1.00-------------------------------------
..............................................................................................................TGGGCTGAGGGAGGGGCAAGCA...........................................................................................................2211.001.00-----1.00----------------------------------------
...............................................................................................................................................................................................................CGAGAACTTTGGGAGAA...............1701.001.00---------------------------1.00------------------
...........................................................................................................................................................................................AGCTGCTGGACGGAGGGCT.................................1911.001.00--------------------1.00-------------------------
...........................................................................................................................................................................................AGCTGCTGGACGGAGGGCTTCG..............................2211.001.00-----1.00----------------------------------------
..............................................................CTGATCCAACCTGAGCCAAGAGACC........................................................................................................................................................2511.001.00------------------------------1.00---------------
....................................................................................................................................................TCAGGCACTGGCCCCTGCG........................................................................191.000.00-1.00--------------------------------------------
....................................................................................................................................................TCAGGCACTGGCCCCTTTTA.......................................................................201.000.001.00---------------------------------------------
.................................................................................................ACCATCTTGGGTGTGGGC............................................................................................................................1811.001.00----------------------------1.00-----------------
...............................................................................................................................AAGCAAAAGGACTTGGCG..............................................................................................181.000.00------------1.00---------------------------------
.................................TGGAACTTGAGGAGGAG.............................................................................................................................................................................................1720.500.50---------------------------------------0.50------
........................................................................................................................................................................................................AGGGCTTCGAGAACT........................1520.500.50-------0.50--------------------------------------
..................................................................................................................................CAAAAGGACTTGGAAG.............................................................................................1640.500.50--------------------------------------0.50-------
............................................................................................................TGTGGGCTGAGGGAGGG..................................................................................................................1740.250.25-------------------------------------------0.25--

Antisense strand
CTACTGGCCCCACTGTTGTTGCAGGTGGGCACGTGGAACTTGAGGAGGAGGTAACCAGTCAGCTGATCCAACCTGAGCCAAGAGACCCATGCCTGGGACCATCTTGGGTGTGGGCTGAGGGAGGGGCAAGCAAAAGGACTTGGAAGAGTCAGGCACTGGCCCCTCTGATGTGTCTTCTCTGACTCCCAGCTGCTGGACGGAGGGCTTCGAGAACTTTGGGAGGAGAGTGGACTACACCT
.................................................................(((...(((.(((........(((((((..((.....))..)))))))))).)))(((((((..((.....(((((....)))))..))....))))))).)))......................................................................
................................................................65.........................................................................................................172.................................................................
SizePerfect hitTotal NormPerfect NormSRR189782SRR189784SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)
SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)
SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)
SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)
SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)
SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)
SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)
SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)
SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)
SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)
DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
GSM416733(GSM416733)
HEK293. (cell line)
TAX577740(Rovira)
total RNA. (breast)
SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
SRR037931(GSM510469)
293GFP. (cell line)
SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)
SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)
SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)
SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)
GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR033723(GSM497068)
L1236 cell line (L1236). (B cell)
SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)
SRR553574(SRX182780)
source: Heart. (Heart)
SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR444040(SRX128888)
Sample 1cDNABarcode: AF-PP-333: ACG CTC TTC C. (skin)
SRR444048(SRX128896)
Sample 8cDNABarcode: AF-PP-333: ACG CTC TTC C. (skin)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
........................................................................................ACCCAAGATGGTCCCAGGCAT.................................................................................................................................. 2112.002.00------2.00---------------------------------------
......................................................................................................................................................................................CTCCCAGCTGCTGGACGGAGGGCTTCCAG............................ 292.000.00---2.00------------------------------------------
..............................................................CTGATCCAACCTGAGCCAAGAA........................................................................................................................................................... 221.000.00---------------------------------1.00------------
........AGTTCCACGTGCCCACCTGCAACAACAGTGGG....................................................................................................................................................................................................... 3211.001.00--1.00-------------------------------------------
..................................................GTAACCAGTCAGCTGATCCATTT...................................................................................................................................................................... 231.000.00-----------------------1.00----------------------
....................................................................................................................................................................................................................GTAGTCCACTCTCCTCCCAAAGT.... 2311.001.00------------------------1.00---------------------
...............................................................................................................................................................................................................CGAGAACTTTGGGAGGAA.............. 1801.000.00-----------------1.00----------------------------
........................................................................GTCCCAGGCATGGGTCTCTTGGCTCAG............................................................................................................................................ 2711.001.00----------1.00-----------------------------------
.............................................................................................................GTGGGCTGAGGGAGGGGTCTA............................................................................................................. 211.000.00-1.00--------------------------------------------
..........................................................TCAGCTGATCCAACCTGC................................................................................................................................................................... 181.000.00-----------------------------------1.00----------
........................................................AGGTTGGATCAGCTGACT..................................................................................................................................................................... 1820.500.50-------------------------------------0.50--------
.........................................................................................................................................................ATCAGAGGGGCCAGTG...................................................................... 1630.330.33-----------------------------------------0.33----
....................................................................TCTTGGCTCAGGTTG............................................................................................................................................................ 1530.330.33----------------------------------------0.33-----
..........................AAGTTCCACGTGCCC...................................................................................................................................................................................................... 1540.250.25------------------------------------------0.25---
.......................................................................................ATGGTCCCAGGCATG......................................................................................................................................... 1550.200.20--------------------------------------------0.20-
.........................................................GTTGGATCAGCTGAC....................................................................................................................................................................... 1570.140.14---------------------------------------------0.14