ID: uc001end.3_intron_11_0_chr1_145310064_f.3p
GENE: (12)
chr1:145310903-145311152+


(1)
AGO1.ip 		(4)
B-CELL 		(1)
BRAIN 		(3)
BREAST 		(16)
CELL-LINE 		(1)
CERVIX 		(1)
FIBROBLAST 		(3)
HELA 		(1)
LIVER 		(1)
RRP40.ip 		(16)
SKIN 		(1)
TESTES 		(1)
UTERUS 		(1)
XRN.ip

Sense strand
GGAATTTTGCCCAAGGCTCATGAAAGAACCCAAGCCAGTTTTCTCAAGACTTGACCTCAGGCCTACTGGAATATTTCTCTGAAAGTCTCCTGTTCTCACACTGACAAGACTGATGTCCCTGTGTTAGGATTGGACAGAGGAATGTTTCTGTGTGCAAGGAAGAACTTAATGTAAGAGGGCACATCTGAATTTATTTGCAGGACATCGGTGGGATCAAGTGAAAAAGGAGGACCAAGAGGCAACAGGTCCC
.................................................................................................................(((((((..((((((.(((.(((.((((....)))).))).))).......))))))...)).))))).....................................................................
..............................................................................................................111....................................................................182..................................................................
SizePerfect hitTotal NormPerfect NormDRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		SRR553576(SRX182782)
source: Testis. (testes)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR037940(GSM510478)
293cand5_rep2. (cell line)		SRR015361(GSM380326)
Memory B cells (MM55). (B cell)		SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)		SRR037939(GSM510477)
293cand5_rep1. (cell line)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		GSM450607(GSM450607)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		SRR191607(GSM715717)
192genomic small RNA (size selected RNA from . (breast)		SRR207118(GSM721080)
RRP40 knockdown. (RRP40 cell line)		SRR033726(GSM497071)
Mututated CLL (CLLM633). (B cell)		SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		SRR037941(GSM510479)
293DroshaTN. (cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)		DRR001487(DRX001041)
"Hela long nuclear cell fraction, LNA(+)". (hela)		TAX577743(Rovira)
total RNA. (breast)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		SRR037936(GSM510474)
293cand1. (cell line)		SRR330881(SRX091719)
tissue: skin psoriatic uninvolveddisease stat. (skin)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		GSM532880(GSM532880)
G659T. (cervix)		SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)		SRR363676(GSM830253)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR029126(GSM416755)
143B. (cell line)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		SRR038863(GSM458546)
MM603. (cell line)		SRR191579(GSM715689)
102genomic small RNA (size selected RNA from . (breast)		DRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)		SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)
...........................................................................................................................................................AAGGAAGAACTTAATGTAAGAGG........................................................................2319.009.00---5.00--3.00--------------------------------------1.00--
...............................................................................................................................GATTGGACAGAGGAATGTTTCTGTGTGCAAGGAAGAACTTAATGTAAGAGGGCACATCTGAATTTATTTGCAG..................................................7316.006.006.00-----------------------------------------------
..............................................................................................................................GGATTGGACAGAGGAATGTTTCTGTGTGCAAGGAAGAACTTAATGTAAGAGGGCACATCTGAATTTATTTGCAG..................................................7416.006.006.00-----------------------------------------------
..........................................................................................................................GTTAGGATTGGACAGAGGAATGTTTCTGTGTGCAAGGAAGAACTTAATGTAAGAGGGCACATCTGAATTTATTTGC....................................................7615.005.005.00-----------------------------------------------
...............................................................................................................................GATTGGACAGAGGAATGTTTCTGTGTGCAAGGAAGAACTTAATGTAAGAG.........................................................................5015.005.005.00-----------------------------------------------
..........................................................................................................................................................................GTAAGAGGGCACATCTGAATTT..........................................................2214.004.00----4.00-------------------------------------------
........................................................................................................................................................TGCAAGGAAGAACTTAATGTAAGAGGGC......................................................................2814.004.00-4.00----------------------------------------------
.........................................................................................................................................................................TGTAAGAGGGCACATCTGAATTT..........................................................2313.003.00--3.00---------------------------------------------
...........................................................................................................................................................AAGGAAGAACTTAATGTAAGAG.........................................................................2213.003.00-----3.00------------------------------------------
.........................................................................................................................................................GCAAGGAAGAACTTAATG...............................................................................1813.003.00--3.00---------------------------------------------
.............................................................................................................................................................................AGAGGGCACATCTGAATTTATTT......................................................2312.002.00---------2.00--------------------------------------
.................................................................................................................................................................................GGCACATCTGAATTTATTTGCA...................................................2212.002.00-----------------2.00------------------------------
..........................................................................................................................................................CAAGGAAGAACTTAATGTAAGAGGGC......................................................................2612.002.00-2.00----------------------------------------------
................................................................................................................................................................................GGGCACATCTGAATTTATTTGCA...................................................2312.002.00--------------1.00-------1.00-------------------------
.............................................................................................................................................................GGAAGAACTTAATGTAAGAGGGCACATCT................................................................2912.002.00----------2.00-------------------------------------
................................................................................................................................................................................................ATTTGCAGGACATCGGTGGAAT....................................222.000.00--2.00---------------------------------------------
.........................................................................................................................................................................................................................GTGAAAAAGGAGGACGAA...............182.000.00-------------------2.00----------------------------
.....................................................................................................................................................GTGTGCAAGGAAGAACTTAATGTAAGAGGGCC.....................................................................321.000.00--------------1.00---------------------------------
........................................................................................................................................................TGCAAGGAAGAACTTAATGTAAGAGGGCCC....................................................................3011.004.00------------------------------1.00-----------------
........................................................................................................................................GAGGAATGTTTCTGTGTGCAAGGAAA........................................................................................261.000.00------------------1.00-----------------------------
.......................................................................................................................................................GTGCAAGGAAGAACTTAATGTAAGAGGGCAC....................................................................3111.001.00------------1.00-----------------------------------
.............................................................................................................................................................................AGAGGGCACATCTGAATTTATTTGC....................................................2511.001.00-1.00----------------------------------------------
.........................................................................................................................................................................TGTAAGAGGGCACATCTGAATTTATTTGCAG..................................................3111.001.00----------------------------1.00-------------------
......................................................................................................................................................TGTGCAAGGAAGAACTTAATGTAAGAGGGC......................................................................3011.001.00-1.00----------------------------------------------
..........................................................................................................................................................................................................................TGAAAAAGGAGGACCAAGAGGCAACAGCTC..301.000.00-1.00----------------------------------------------
.......................................................................................................................................................GTGCAAGGAAGAACTTAATGTAAGAGGG.......................................................................2811.001.00--------------------------------1.00---------------
............................................................................................................................TAGGATTGGACAGAGGAATGTTTCTGTGTGCAAGGAAGAACTTAATGTAAGAGGGCACATCTGAATTTATTT......................................................7211.001.00---------------------1.00--------------------------
........................................................................................................................................................................ATGTAAGAGGGCACATCTGAATTTA.........................................................2511.001.00--1.00---------------------------------------------
......................AAAGAACCCAAGCCAACG..................................................................................................................................................................................................................181.000.00----------------------1.00-------------------------
...........................................................................................................................................................................TAAGAGGGCACATCTGAATTTATTTGC....................................................2711.001.00-1.00----------------------------------------------
.................................................................................................................................TTGGACAGAGGAATGTTTCTGTGTGCAAGGAAGAACTTAATGTAAGAGGGCACATCTGAATTTATTT......................................................6711.001.00---------------------1.00--------------------------
........................................................................................................................................................TGCAAGGAAGAACTTAATGT..............................................................................2011.001.00--1.00---------------------------------------------
..........................................................................................................................................................................GTAAGAGGGCACATCTGAATTTATTTG.....................................................2711.001.00------------------------------------1.00-----------
...................................................................................................................TCCCTGTGTTAGGATTCGGC...................................................................................................................201.000.00-----------------------------------------------1.00
..........................................................................................................................GTTAGGATTGGACAGAGGAAAA..........................................................................................................221.000.00-------------1.00----------------------------------
.............................................................................................................................................................GGAAGAACTTAATGTAAGAGGGCACATCTG...............................................................3011.001.00--------------------1.00---------------------------
...............................................................................................................................................................................AGGGCACATCTGAATTTATTTG.....................................................2211.001.00------------------------------------------1.00-----
...........................................................................................................................TTAGGATTGGACAGAGGAATGTTTCTGTGTGCAAGGAAGAACTTAATGTAAGAGGGCACATCTGAATTTATTTGCA...................................................7611.001.00-------------------------------------------1.00----
........................................................................................................................................................................ATGTAAGAGGGCACATCTGAATTTATTTG.....................................................2911.001.00--------------------------1.00---------------------
.........................................................................................................................................................GCAAGGAAGAACTTAATGTAAGAGGGCA.....................................................................2811.001.00-----------------------------------------1.00------
..................................................................................................................................................................................................TTGCAGGACATCGGTAG.......................................171.000.00--------------------------------------------1.00---
...................................................................................................................................................CTGTGTGCAAGGAAGAACTTAATGTAA............................................................................2711.001.00----------------------------------------1.00-------
........................................................................................................................................................TGCAAGGAAGAACTTAATGTAAGAGGGCAA....................................................................301.000.00-------1.00----------------------------------------
.............................................................................................................................................................GGAAGAACTTAATGTAAGAGGGCACATCTA...............................................................3011.002.00-------1.00----------------------------------------
.....................................................................................................................................................................TTAATGTAAGAGGGCACATCTGAATT...........................................................2611.001.00--------------------1.00---------------------------
.......................................................................................................................................................GTGCAAGGAAGAACTTAATGTAAGAGGGCCC....................................................................311.000.00-------------------------1.00----------------------
.........................................................................................................................................................................TGTAAGAGGGCACATCTGAATTTATTTG.....................................................2811.001.00-----------------------1.00------------------------
............................................................................................................................................................AGGAAGAACTTAATGTAAGA..........................................................................2011.001.00-------------------------------1.00----------------
...........................................................................................................................................................AAGGAAGAACTTAATGTAAGAGGGCAC....................................................................2711.001.00-1.00----------------------------------------------
......TTGCCCAAGGCTCATGAAAGAACAC...........................................................................................................................................................................................................................251.000.00------------------------1.00-----------------------
..............................................................................................................................................................GAAGAACTTAATGTAAGAGGGCACA...................................................................2511.001.00---------------------------1.00--------------------
..............................................AGACTTGACCTCAGGCCTACCGG.....................................................................................................................................................................................231.000.00---------------1.00--------------------------------
......................................................................................................................................................................TAATGTAAGAGGGCACATCTGA..............................................................2211.001.00----------------1.00-------------------------------
..............................................................................................................................................................GAAGAACTTAATGTATAA..........................................................................181.000.00-----------1.00------------------------------------
...........................................................................................................................................................AAGGAAGAACTTAATGTAAGAGGGCA.....................................................................2611.001.00------------------1.00-----------------------------
........................................................................................................................................................TGCAAGGAAGAACTTAATGTAAGAGGGCAC....................................................................3011.001.00------------1.00-----------------------------------
.............................................................................................................................................................................AGAGGGCACATCTGAATTTATTTGCAGAA................................................291.000.00---------------------------------------1.00--------
............................................................................................................................................................................AAGAGGGCACATCTGAATT...........................................................1911.001.00-------------1.00----------------------------------
................................................................................................................................................................................GGGCACATCTGAATTTATTTGCAG..................................................2411.001.00-----------------------------------1.00------------
..............................................................................................................................................................GAAGAACTTAATGTATCA..........................................................................181.000.00-----------1.00------------------------------------
.........................................................................................................................................................GCAAGGAAGAACTTAATGTAAGAGGGCAC....................................................................2911.001.00----------------------------------1.00-------------
..........................................................................................................................................................................................................CATCGGTGGGATCAAGTGAAAAAGGAGGTT..................301.000.00--------1.00---------------------------------------
.......................................................................................................................................AGAGGAATGTTTCTGTGTGCAAGGAAGAACTT...................................................................................3211.001.00-------------------------------------1.00----------
..............................................AGACTTGACCTCAGGCCTACAGG.....................................................................................................................................................................................231.000.00---------------1.00--------------------------------
..........................................................................................................................................................................GTAAGAGGGCACATCTGAATTTATT.......................................................2511.001.00--------------------------------------1.00---------
....................................................................................................................................................................CTTAATGTAAGAGGGCACATCTGAAT............................................................2611.001.00----------------1.00-------------------------------
.............................................................................................................................................................GGAAGAACTTAATGTAAGAGGGCACAT..................................................................2711.001.00----------------------------------------------1.00-
.....................................................................................................................................................GTGTGCAAGGAAGAACTTAATGTAAGA..........................................................................2711.001.00--------1.00---------------------------------------
...........................................................................................................................................................................TAAGAGGGCACATCTGAATTTAT........................................................2311.001.00---------------------------------1.00--------------
..........................................................................................TGTTCTCACACTGACAAGACTGATG.......................................................................................................................................2590.110.11-----------------------0.11------------------------

Antisense strand
GGAATTTTGCCCAAGGCTCATGAAAGAACCCAAGCCAGTTTTCTCAAGACTTGACCTCAGGCCTACTGGAATATTTCTCTGAAAGTCTCCTGTTCTCACACTGACAAGACTGATGTCCCTGTGTTAGGATTGGACAGAGGAATGTTTCTGTGTGCAAGGAAGAACTTAATGTAAGAGGGCACATCTGAATTTATTTGCAGGACATCGGTGGGATCAAGTGAAAAAGGAGGACCAAGAGGCAACAGGTCCC
.................................................................................................................(((((((..((((((.(((.(((.((((....)))).))).))).......))))))...)).))))).....................................................................
..............................................................................................................111....................................................................182..................................................................
SizePerfect hitTotal NormPerfect NormDRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		SRR553576(SRX182782)
source: Testis. (testes)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR037940(GSM510478)
293cand5_rep2. (cell line)		SRR015361(GSM380326)
Memory B cells (MM55). (B cell)		SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)		SRR037939(GSM510477)
293cand5_rep1. (cell line)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		GSM450607(GSM450607)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		SRR191607(GSM715717)
192genomic small RNA (size selected RNA from . (breast)		SRR207118(GSM721080)
RRP40 knockdown. (RRP40 cell line)		SRR033726(GSM497071)
Mututated CLL (CLLM633). (B cell)		SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		SRR037941(GSM510479)
293DroshaTN. (cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)		DRR001487(DRX001041)
"Hela long nuclear cell fraction, LNA(+)". (hela)		TAX577743(Rovira)
total RNA. (breast)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		SRR037936(GSM510474)
293cand1. (cell line)		SRR330881(SRX091719)
tissue: skin psoriatic uninvolveddisease stat. (skin)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		GSM532880(GSM532880)
G659T. (cervix)		SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)		SRR363676(GSM830253)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR029126(GSM416755)
143B. (cell line)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		SRR038863(GSM458546)
MM603. (cell line)		SRR191579(GSM715689)
102genomic small RNA (size selected RNA from . (breast)		DRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)		SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)
.......................................................................................................................................................................................................GGACATCGGTGGGATCC.................................. 171.000.00-----------------------------1.00------------------