ID: uc001eiu.1_intron_6_0_chr1_121310000_f.3p
GENE: EMBP1(7)
chr1:121310374-121310623+


(1)
AGO1.ip 		(1)
AGO1.ip OTHER.mut 		(2)
AGO2.ip 		(1)
B-CELL 		(4)
BRAIN 		(7)
BREAST 		(19)
CELL-LINE 		(1)
FIBROBLAST 		(2)
HEART 		(2)
HELA 		(1)
KIDNEY 		(2)
OTHER 		(15)
SKIN 		(1)
UTERUS

Sense strand
CTTATGCATATAAGCTAACTTTCTTTGCTGATTAGATTCAAAATTTTTAGTTCATCAACATTACAGTAGGAGCTCTTTGTTTTGGTAGTAGATTGGATCCCTCACTTCCCAGTATTTTTTGCTTTGCTAAAGTGATAGTAAGTTACTGTAAAATAACCAGAACATACTAATTATATTTGATTATGCTTTATTTAACTCAGGAGTCTCTGGGCCAGTGAATACAAAACATCATGTCGAGAATCATTGGAAG
..............................................................................((((((((........(((.........)))(((((...((((((((((....)))).)))))).))))).......))))))))....((((((....))))))...................................................................
..............................................................................79.......................................................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR189782SRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		SRR037937(GSM510475)
293cand2. (cell line)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)		TAX577746(Rovira)
total RNA. (breast)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR553575(SRX182781)
source: Kidney. (Kidney)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR330910(SRX091748)
tissue: normal skindisease state: normal. (skin)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR189785SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR037941(GSM510479)
293DroshaTN. (cell line)		GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577579(Rovira)
total RNA. (breast)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330858(SRX091696)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR029132(GSM416761)
MB-MDA231. (cell line)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577453(Rovira)
total RNA. (breast)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577745(Rovira)
total RNA. (breast)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		TAX577743(Rovira)
total RNA. (breast)		SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330875(SRX091713)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		TAX577744(Rovira)
total RNA. (breast)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)		SRR553574(SRX182780)
source: Heart. (Heart)		SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)
...................................................................................GGTAGTAGATTGGATAGTT....................................................................................................................................................1953.000.00-11.0011.008.001.00-6.004.001.00--3.001.00-1.002.00-1.00----------1.00------1.001.00--------------------
...................................................................................GGTAGTAGATTGGATAGT.....................................................................................................................................................1811.000.001.003.00--1.00-1.00-------1.00-----1.00-1.00--1.00----------------1.00--------------
................................................................................TTTGGTAGTAGATTGGATAGTT....................................................................................................................................................229.000.001.00---4.002.00---1.00----------------------1.00------------------------
................................................................................TTTGGTAGTAGATTGTATA.......................................................................................................................................................198.000.006.00---------------1.00-------1.00--------------------------------
................................................................................TTTGGTAGTAGATTGTAT........................................................................................................................................................187.000.001.00-------1.00-2.00-----1.00----------------1.00---------1.00-------------
..................................................................................TGGTAGTAGATTGGATAGTT....................................................................................................................................................205.000.00-------1.00-----1.00-----1.00-----------1.00-----1.00-------------------
................................................................................TTTGGTAGTAGATTGGATAGCT....................................................................................................................................................224.000.00----1.003.00---------------------------------------------------
...................................................................................GGTAGTAGATTGGATAGAT....................................................................................................................................................194.000.00--1.002.001.00----------------------------------------------------
...................................................................................GGTAGTAGATTGGATAG......................................................................................................................................................174.000.004.00--------------------------------------------------------
................................................................................TTTGGTAGTAGATTGTATT.......................................................................................................................................................192.000.002.00--------------------------------------------------------
...................................................................................GGTAGTAGATTGGATAGA.....................................................................................................................................................182.000.00-1.00-1.00-----------------------------------------------------
....................................................................................GTAGTAGATTGGATCGTT....................................................................................................................................................182.000.00--------1.00--------1.00---------------------------------------
................................................................................TTTGGTAGTAGATTGTTTG.......................................................................................................................................................192.000.002.00--------------------------------------------------------
................................................................................TTTGGTAGTAGATTGGATAG......................................................................................................................................................202.000.002.00--------------------------------------------------------
....................................................................................................................................................................................TTATGCTTTATTTAACCATG..................................................202.000.001.00--------------------------1.00-----------------------------
........................................................................................................................................................................................................................................GTCGAGAATCATTGGAAG1821.501.50--------------------------0.50------------------0.500.50----------
................................................................................TTTGGTAGTAGATTGGATGGCT....................................................................................................................................................221.000.00-----1.00---------------------------------------------------
................................................................................TTTGGTAGTAGATTGGATGGTT....................................................................................................................................................221.000.00-----1.00---------------------------------------------------
..................................................................................TGGTAGTAGATTGGATAGT.....................................................................................................................................................191.000.00-----------------------1.00---------------------------------
.........................................................ACATTACAGTAGGAGCTCTTTGTT.........................................................................................................................................................................2411.001.00-----------------------------1.00---------------------------
................................................................................TTTGGTAGTAGATTGGATTGTG....................................................................................................................................................221.000.00----1.00----------------------------------------------------
................................................................................TTTGGTAGTAGATTGGATAGAT....................................................................................................................................................221.000.00---------1.00-----------------------------------------------
................................................................................TTTGGTAGTAGATTGGATT.......................................................................................................................................................191.000.001.00--------------------------------------------------------
................................................................................TTTGGTAGTAGATTGGCA........................................................................................................................................................181.000.00----------------------------------1.00----------------------
...................................................................................GGTAGTAGATTGGATGGTT....................................................................................................................................................191.000.00--1.00------------------------------------------------------
.................................................................................................................................................................................................AACTCAGGAGTCTCTGGGCCAGCGA................................251.000.00------------------------------1.00--------------------------
................................................................................TTTGGTAGTAGATTGGAAAG......................................................................................................................................................2011.001.001.00--------------------------------------------------------
...................................................................................GGTAGTAGATTGGATAGG.....................................................................................................................................................181.000.00---------------------------------------1.00-----------------
................................................................................TTTGGTAGTAGATTGTATG.......................................................................................................................................................191.000.001.00--------------------------------------------------------
................................................................................TTTGGTAGTAGATTGTA.........................................................................................................................................................171.000.00------------1.00--------------------------------------------
................................................................................TTTGGTAGTAGATTGTATC.......................................................................................................................................................191.000.00--------------------------------------1.00------------------
................................................................................TTTGGTAGTAGATTGTAAA.......................................................................................................................................................191.000.00------------------1.00--------------------------------------
.................................................................................TTGGTAGTAGATTGGATCGG.....................................................................................................................................................201.000.00---------1.00-----------------------------------------------
..................................................................................................................................AGTGATAGTAAGTTAACA......................................................................................................181.000.00-------------1.00-------------------------------------------
.............................................................................................................................................................................................................TCTGGGCCAGTGAATACAAACC.......................221.000.00---------------------1.00-----------------------------------
................................................................................TTTGGTAGTAGATTGGATACC.....................................................................................................................................................211.000.00--------1.00------------------------------------------------
................................................................................TTTGGTAGTAGATTGGA.........................................................................................................................................................1711.001.00----------------------------------------1.00----------------
.................................................................................TTGGTAGTAGATTGGATAGTT....................................................................................................................................................211.000.00-----1.00---------------------------------------------------
................................................................................TTTGGTAGTAGATTGGATAT......................................................................................................................................................201.000.001.00--------------------------------------------------------
...................................................................................GGTAGTAGATTGGATAGAA....................................................................................................................................................191.000.00------------1.00--------------------------------------------
...................................................................................GGTAGTAGATTGGATAATT....................................................................................................................................................191.000.00-----1.00---------------------------------------------------
..........................................................................................................................................................................................................GTCTCTGGGCCAGTGGG...............................171.000.00-----------------------------------------1.00---------------
................................................................................TTTGGTAGTAGATTGCAT........................................................................................................................................................181.000.00----------1.00----------------------------------------------
................................................................................TTTGGTAGTAGATTGGATGG......................................................................................................................................................201.000.001.00--------------------------------------------------------
................................................................................TTTGGTAGTAGATTGGATAC......................................................................................................................................................201.000.001.00--------------------------------------------------------
.........................................................................................................................................................................................................AGTCTCTGGGCCAGTGAATACAAAACATC....................2920.500.50---------------------------------------------------0.50-----
.............................................................................................................................................................................................................................CAAAACATCATGTCGAGA...........1820.500.50--------------------------0.50------------------------------
..........................................................................................................................................................................................................................ATACAAAACATCATGTCGA.............1920.500.50----------------------------------------------------0.50----
......................................................................................................................................................................................................................................ATGTCGAGAATCATTGGA..1820.500.50-----------------------------------------------------0.50---
................................................................................................................................................................................................................................AACATCATGTCGAGAATCATTGGAAG2620.500.50------------------------------------------------------0.50--
...................................................................................................................................................................................................................................ATCATGTCGAGAATCATT.....1820.500.50--------------------------------------------0.50------------
.........................................................................................................................................................................................CTTTATTTAACTCAGGAGT..............................................1920.500.50-------------------------------------------------------0.50-
..................................................................................................................................................................................................................................CATCATGTCGAGAATCATTGGAAG2420.500.50-----------------------------------------------0.50---------
..................................................................................................................................................................................................................................CATCATGTCGAGAATCATTGGA..2220.500.50--------------------------------------------------0.50------
............................................................................................................................................................................................................CTCTGGGCCAGTGAATACAAAACATC....................2620.500.50------------------------------------------------0.50--------
..................................................................................................................................................................................................ACTCAGGAGTCTCTGGGCCAGTG.................................2320.500.50-------------------------------------------------0.50-------
.....................................................................................................................................................................................................................AGTGAATACAAAACATC....................1730.330.33--------------------------------------------------------0.33

Antisense strand
CTTATGCATATAAGCTAACTTTCTTTGCTGATTAGATTCAAAATTTTTAGTTCATCAACATTACAGTAGGAGCTCTTTGTTTTGGTAGTAGATTGGATCCCTCACTTCCCAGTATTTTTTGCTTTGCTAAAGTGATAGTAAGTTACTGTAAAATAACCAGAACATACTAATTATATTTGATTATGCTTTATTTAACTCAGGAGTCTCTGGGCCAGTGAATACAAAACATCATGTCGAGAATCATTGGAAG
..............................................................................((((((((........(((.........)))(((((...((((((((((....)))).)))))).))))).......))))))))....((((((....))))))...................................................................
..............................................................................79.......................................................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR189782SRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		SRR037937(GSM510475)
293cand2. (cell line)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)		TAX577746(Rovira)
total RNA. (breast)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR553575(SRX182781)
source: Kidney. (Kidney)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR330910(SRX091748)
tissue: normal skindisease state: normal. (skin)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR189785SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR037941(GSM510479)
293DroshaTN. (cell line)		GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577579(Rovira)
total RNA. (breast)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330858(SRX091696)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR029132(GSM416761)
MB-MDA231. (cell line)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577453(Rovira)
total RNA. (breast)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577745(Rovira)
total RNA. (breast)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		TAX577743(Rovira)
total RNA. (breast)		SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330875(SRX091713)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		TAX577744(Rovira)
total RNA. (breast)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)		SRR553574(SRX182780)
source: Heart. (Heart)		SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)