ID: uc001egm.2_intron_4_0_chr1_117087227_r.3p
GENE: (1)
chr1:117087177-117087426-


(1)
B-CELL
(2)
BREAST
(11)
CELL-LINE
(1)
CERVIX
(1)
FIBROBLAST
(6)
HEART
(4)
HELA
(1)
LIVER
(33)
SKIN
(1)
UTERUS
(1)
XRN.ip

Sense strand
CATGAATGTCGGGTCCATTTCTTGGATTTATGCAGGTCCCAGTTTTCTATTAAAGAGTAAGCTCCACATGGTCAAACATGTTCTTACTTCCTGTATTTTGTGTCAGCAGTTTGTCAGCTTAGCACAAAAAGTACCTGATGAATAATTTCTGCCACCAAAGTCATGTTGTTTTTTCTAACCAATTTTTTTTTCTCTCCTAGGTTTCATCAGCTGTTTTTCCCAACAAATATATGGTGTTGTGTATGGGAAT
........................................................................................................................................((.(((((((..((........))....)))))))..))...........................................................................
...............................................................................................................................128................................................................195.....................................................
SizePerfect hitTotal NormPerfect NormSRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)
SRR037944(GSM510482)
293DcrTN_cand5. (cell line)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR191409(GSM715519)
19genomic small RNA (size selected RNA from t. (breast)
SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)
DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)
GSM359177(GSM359177)
hela_nucl_a. (hela)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)
SRR029124(GSM416753)
HeLa. (hela)
SRR207110(GSM721072)
Nuclear RNA. (cell line)
SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)
SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)
DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)
GSM532876(GSM532876)
G547T. (cervix)
SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)
GSM359174(GSM359174)
hela_5_1. (hela)
SRR029129(GSM416758)
SW480. (cell line)
GSM359175(GSM359175)
hela_5_pct. (hela)
SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR037943(GSM510481)
293DcrTN. (cell line)
SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)
SRR363675(GSM830252)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)
SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)
SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)
SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330858(SRX091696)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)
SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)
SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)
SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)
SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR191548(GSM715658)
101genomic small RNA (size selected RNA from . (breast)
..........................................................................................................................................................................TTTTCTAACCAATTTTTTTTT...........................................................21120.0020.00-3.002.00----2.00-1.002.00---1.00-1.00--1.00--1.00--------1.00--1.00-1.00---1.00-----------1.001.00-------
.........................................................................................................................................................................TTTTTCTAACCAATTTTTTTTT...........................................................22117.0017.001.001.00----2.00-------------1.00---1.001.00---------1.00-1.001.00----1.001.00-1.001.00-1.00-1.00--1.00------
..........................................................................................................................................................................TTTTCTAACCAATTTTTTTTTCTCTCCTAGA.................................................316.000.002.00-----------1.00-----------------1.00--------------1.00----1.00----------
.............................................................................................................................................................................TCTAACCAATTTTTTTTTCTCTCCTAGAA................................................294.000.001.00----------2.00---------1.00---------------------------------------
..........................................................................................................................................................................TTTTCTAACCAATTTTTTTTTCTCTC......................................................2614.004.00-------------2.00-------------1.00-1.00-------------------------------
.............................................................................................................................................................................TCTAACCAATTTTTTTTTCTCTCCTAGAAA...............................................303.000.00--------2.00---------------------------------1.00------------------
.............................................................................................................................................................................TCTAACCAATTTTTTTTTCTCTCCTAGA.................................................283.000.00---------------1.00-----------------------1.00-1.00-------------------
.........................................................................................................................................................................TTTTTCTAACCAATTTTTTTTTCTC........................................................2512.002.00-----------------1.00----------1.00--------------------------------
............................................................................................................................................................................TTCTAACCAATTTTTTTTTCTCTCCTAGAA................................................302.000.00---2.00---------------------------------------------------------
............GTCCATTTCTTGGATAATT...........................................................................................................................................................................................................................191.000.00---------------------------------1.00---------------------------
......................TGGATTTATGCAGGTGGAC.................................................................................................................................................................................................................191.000.00------------1.00------------------------------------------------
....................................................................................................................................ACCTGATGAATAATTTCTG...................................................................................................1911.001.00--------------------------------------------------------1.00----
.........................................................................................................................................................................TTTTTCTAACCAATTTTTTTTTT..........................................................2311.0017.001.00------------------------------------------------------------
.......................................................................................................................................................................................................GGTTTCATCAGCTGTTTTTCCCAACAA........................2711.001.00--1.00----------------------------------------------------------
..................TTCTTGGATTTATGCACC......................................................................................................................................................................................................................181.000.00------------------1.00------------------------------------------
..................................................................................................................................................................................CCAATTTTTTTTTCTCTTCAG...................................................211.000.00------------------------------------------------1.00------------
......................................................................................................................................................................................TTTTTTTTTCTCTCCTACAC................................................201.000.00----1.00--------------------------------------------------------
...............................................................................................................................................................................................................CAGCTGTTTTTCCCAACA.........................1811.001.00-----1.00-------------------------------------------------------
..............................................................................................................................................TAATTTCTGCCACCAAA...........................................................................................1731.001.00--------------0.33--------------------------------------------0.330.33
.........................................................................................................................................................................TTTTTCTAACCAATTTATA..............................................................191.000.00----1.00--------------------------------------------------------
................................................................................................................................................................................................................................AAATATATGGTGTTGTGTATG.....2111.001.00---------1.00---------------------------------------------------
...........................................................................................................................................................................TTTCTAACCAATTTTTTTTTCTCTCCTAGA.................................................301.000.00--------------------------1.00----------------------------------
......................................................................................................................................................................................TTTTTTTTTCTCTCCTATTG................................................201.000.00----1.00--------------------------------------------------------
............................................................................................................................................................................TTCTAACCAATTTTTTTTTCTCTCCTATAA................................................301.000.00---1.00---------------------------------------------------------
..........................................................................................................................................................................TTTTCTAACCAATTTTTTTTTCTCTCCTAGAA................................................321.000.00--------------------------------1.00----------------------------
....................................................................................................................................................................................AATTTTTTTTTCTCTCCTAG..................................................2011.001.00---------------------------------------------------------1.00---
..............................................................................................................................................TAATTTCTGCCACCAA............................................................................................1640.250.25----------------------------------------------------------0.25--
...............................................................................................................................................AATTTCTGCCACCAAA...........................................................................................1670.140.14----------------------------------------------------------0.14--

Antisense strand
CATGAATGTCGGGTCCATTTCTTGGATTTATGCAGGTCCCAGTTTTCTATTAAAGAGTAAGCTCCACATGGTCAAACATGTTCTTACTTCCTGTATTTTGTGTCAGCAGTTTGTCAGCTTAGCACAAAAAGTACCTGATGAATAATTTCTGCCACCAAAGTCATGTTGTTTTTTCTAACCAATTTTTTTTTCTCTCCTAGGTTTCATCAGCTGTTTTTCCCAACAAATATATGGTGTTGTGTATGGGAAT
........................................................................................................................................((.(((((((..((........))....)))))))..))...........................................................................
...............................................................................................................................128................................................................195.....................................................
SizePerfect hitTotal NormPerfect NormSRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)
SRR037944(GSM510482)
293DcrTN_cand5. (cell line)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR191409(GSM715519)
19genomic small RNA (size selected RNA from t. (breast)
SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)
DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)
GSM359177(GSM359177)
hela_nucl_a. (hela)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)
SRR029124(GSM416753)
HeLa. (hela)
SRR207110(GSM721072)
Nuclear RNA. (cell line)
SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)
SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)
DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)
GSM532876(GSM532876)
G547T. (cervix)
SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)
GSM359174(GSM359174)
hela_5_1. (hela)
SRR029129(GSM416758)
SW480. (cell line)
GSM359175(GSM359175)
hela_5_pct. (hela)
SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR037943(GSM510481)
293DcrTN. (cell line)
SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)
SRR363675(GSM830252)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)
SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)
SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)
SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330858(SRX091696)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)
SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)
SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)
SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)
SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR191548(GSM715658)
101genomic small RNA (size selected RNA from . (breast)
.........................................................................................................................GCACAAAAAGTACCTACT............................................................................................................... 181.000.00-----------------------1.00-------------------------------------
..................................................................................CTTACTTCCTGTATTTTGCAA................................................................................................................................................... 211.000.00-------------------------------------------------------1.00-----
.............................................................ATGTTTGACCATGTGGAG........................................................................................................................................................................... 1811.001.00-----1.00-------------------------------------------------------