ID: uc001efx.3_intron_1_0_chr1_116245617_r.3p
GENE: (9)
chr1:116245567-116245816-


(1)
AGO1.ip OTHER.mut 		(3)
BREAST 		(7)
CELL-LINE 		(1)
CERVIX 		(8)
HEART 		(1)
LIVER 		(1)
OTHER 		(1)
RRP40.ip 		(1)
SKIN

Sense strand
TTATGCTGTGTCATCTTTTATTTAATGCTTATTTGAAGTGCTTGAAGGCTGGGGCCAAGTCTTCAATTTGCTAAGTGCTCACAGCTGTTTTGAAGACCTTTAACCAATGGTGACCTAGTTACTGTGATGGGACGGCGGGTGGGTCCTTAACAGAGAATGCCCTCTGCCTGCTGTCTAATCTTATTTTTTTGTTGCTGCAGCTCGTTGCCTACTGGGAGAAGACTTTCAAGATTGACCTATTCAGGCCACA
..........................................................................................................((((((((...))))))))(((.(((((((((((((((.(((....)))...))))...))))))))))).))).........(((....)))...................................................
.........................................................................................................106...........................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)		SRR191607(GSM715717)
192genomic small RNA (size selected RNA from . (breast)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR015448(SRR015448)
cytoplasmic small RNAs. (breast)		SRR015446(SRR015446)
smallRNAs high-throughput sequencing Total. (breast)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR029128(GSM416757)
H520. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR029130(GSM416759)
DLD2. (cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		GSM532886(GSM532886)
G850T. (cervix)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR444062(SRX128910)
Sample 27_3cDNABarcode: AF-PP-343: ACG CTC TT. (skin)
..............................................................................................................TGACCTAGTTACTGTGCGT.........................................................................................................................191012.000.00998.00-14.00-------------------
..............................................................................................................TGACCTAGTTACTGTGCGTG........................................................................................................................20497.000.00492.00-5.00-------------------
..............................................................................................................TGACCTAGTTACTGTGCG..........................................................................................................................18130.000.00125.00-5.00-------------------
..................................................................................................................................................................................................................................CAAGATTGACCTATTGACA.....1979.000.00-29.00-27.00-14.004.00---2.002.00---1.00------
..............................................................................................................TGACCTAGTTACTGTGCGGT........................................................................................................................2038.000.0038.00---------------------
...............................................................................................................GACCTAGTTACTGTGCGT.........................................................................................................................1830.000.0030.00---------------------
..............................................................................................................TGACCTAGTTACTGTGCGG.........................................................................................................................1923.000.0022.00-1.00-------------------
..............................................................................................................TGACCTAGTTACTGTGCGA.........................................................................................................................1918.000.0018.00---------------------
..............................................................................................................TGACCTAGTTACTGTTCGT.........................................................................................................................196.000.006.00---------------------
...............................................................................................................GACCTAGTTACTGTGCGTG........................................................................................................................195.000.005.00---------------------
..............................................................................................................TGACCTAGTTACTGTGCGTT........................................................................................................................205.000.005.00---------------------
..............................................................................................................TGACCTAGTTACTGTGCGTA........................................................................................................................205.000.005.00---------------------
..............................................................................................................TGACCTAGTTACTGTACGT.........................................................................................................................193.000.002.00-1.00-------------------
............................................................................................................................................................................................................TTGCCTACTGGGAGAAGACTTTC.......................2313.003.00----1.00------------1.00--1.00-
...........................................................................................................................................................................................................GTTGCCTACTGGGAGAAGAC...........................2013.003.00----2.00-------------1.00---
..............................................................................................................TGACCTAGTTACTGTGCGCG........................................................................................................................203.000.003.00---------------------
...............................................................................................................................................................................................................................TTTCAAGATTGACCTATTCAGGC....2312.002.00----2.00-----------------
..........................................................................................................................................................................................................CGTTGCCTACTGGGAGAAGACT..........................2212.002.00----2.00-----------------
..............................................................................................................TGACCTAGTTACTGTGGGT.........................................................................................................................192.000.002.00---------------------
..................................................................................................................................................................................................................................CAAGATTGACCTATTGCCA.....192.000.00-1.00---1.00----------------
..............................................................................................................TGACCTAGTTACTGTGTGT.........................................................................................................................192.000.002.00---------------------
..............................................................................................................TGACCTAGTTACTGTTC...........................................................................................................................172.000.001.00-1.00-------------------
.........................................................................................................................................................................................................................GAAGACTTTCAAGATTGACCTATTC........2512.002.00---------2.00------------
..............................................................................................................TGACCTAGTTACTGTGTGG.........................................................................................................................192.000.002.00---------------------
................................................................................................................................................................................................................CTACTGGGAGAAGACTTTCA......................2012.002.00--------2.00-------------
..............................................................................................................TGACCTAGTTACTGTGCGGG........................................................................................................................202.000.002.00---------------------
...........................................................................................................................................................................................................GTTGCCTACTGGGAGAAGACTTTC.......................2412.002.00----1.00--1.00--------------
..............................................................................................................TGACCTAGTTACTGTGCTT.........................................................................................................................192.000.002.00---------------------
..............................................................................................................TGACCTAGTTACTGTGTGTG........................................................................................................................202.000.002.00---------------------
..............................................................................................................TGACCTAGTTACTGTTCG..........................................................................................................................181.000.001.00---------------------
..............................................................................................................TGACCTAGTTACTGTGGCG.........................................................................................................................191.000.001.00---------------------
..............................................................................................................TGACCTAGTTACTGTCCG..........................................................................................................................181.000.001.00---------------------
........................................................................................................................................................................................................CTCGTTGCCTACTGGGAGAAGACTTTCA......................2811.001.00----1.00-----------------
.................................................................................................................................................................................ATCTTATTTTTTTGTTCTC......................................................191.000.00------------1.00---------
............................................................................................................................................................................................................TTGCCTACTGGGAGAAGACT..........................2011.001.00----1.00-----------------
..............................................................................................................TGACCTAGTTACTGTGCGC.........................................................................................................................191.000.001.00---------------------
..............................................................................................................TGACCTAGTTACTGTGG...........................................................................................................................171.000.00--1.00-------------------
..............................................................................................................TGACCTAGTTACTGTGCATG........................................................................................................................201.000.001.00---------------------
...............................................................................................................GACCTAGTTACTGTGCGC.........................................................................................................................181.000.001.00---------------------
.................................................................................................................................................................................................................TACTGGGAGAAGACTTT........................1711.001.00----1.00-----------------
.......................................................................................................................................................................................................GCTCGTTGCCTACTGGGAGAAGACTTTC.......................2811.001.00----1.00-----------------
.....................................................................................................................................................................................TATTTTTTTGTTGCTGCCTTC................................................211.000.00--------------1.00-------
..............................................................................................................TGACCTAGTTACTGTGGGTG........................................................................................................................201.000.001.00---------------------
..............................................................................................................TGACCTAGTTACTGTGCGAG........................................................................................................................201.000.001.00---------------------
...............................................................................................................GACCTAGTTACTGTGCGGG........................................................................................................................191.000.001.00---------------------
..................................................................................................................................................................................................................ACTGGGAGAAGACTTTCAAGATTGAC..............2611.001.00----1.00-----------------
..............................................................................................................TGACCTAGTTACTGTCCGT.........................................................................................................................191.000.001.00---------------------
...............................................................................................................GACCTAGTTACTGTGAGT.........................................................................................................................181.000.001.00---------------------
...............................................................................................................................................................................................................CCTACTGGGAGAAGACTTTCAA.....................2211.001.00----1.00-----------------
....................................................................................................................................................................................................................TGGGAGAAGACTTTCAT.....................171.000.00-------------------1.00--
.................................................................................................................................................................................................................TACTGGGAGAAGACTTTCAA.....................2011.001.00-------1.00--------------
................................................................................................................................................................................................................CTACTGGGAGAAGACTTTCAAGATTGA...............2711.001.00--------1.00-------------
.................................................................................................................................................................................................................TACTGGGAGAAGACTTTCAAG....................2111.001.00-------1.00--------------
..............................................................................................................TGACCTAGTTACTGTGAGTGA.......................................................................................................................211.000.001.00---------------------
.......................................................................................................................................................................................................GCTCGTTGCCTACTGGGAGAAGAC...........................2411.001.00-------1.00--------------
.....................................................................................................................................................................................................................GGGAGAAGACTTTCAAGATTGACCTATTC........2911.001.00-------------1.00--------
................................................................................................................................................................................................................................TTCAAGATTGACCTATTCAGGC....2211.001.00----1.00-----------------
..............................................................................................................TGACCTAGTTACTGTGCAGA........................................................................................................................201.000.001.00---------------------
...............................................................................................................................................................................................................CCTACTGGGAGAAGACTTTCAAGATT.................2611.001.00----1.00-----------------
..............................................................................................................TGACCTAGTTACTGTGAGA.........................................................................................................................191.000.001.00---------------------
...................................................................................................................................................................................................................CTGGGAGAAGACTTTC.......................1650.200.20---------0.20------------
......................................................................................................................................................................................................................GGAGAAGACTTTCAAG....................1680.120.12-------------0.12--------

Antisense strand
TTATGCTGTGTCATCTTTTATTTAATGCTTATTTGAAGTGCTTGAAGGCTGGGGCCAAGTCTTCAATTTGCTAAGTGCTCACAGCTGTTTTGAAGACCTTTAACCAATGGTGACCTAGTTACTGTGATGGGACGGCGGGTGGGTCCTTAACAGAGAATGCCCTCTGCCTGCTGTCTAATCTTATTTTTTTGTTGCTGCAGCTCGTTGCCTACTGGGAGAAGACTTTCAAGATTGACCTATTCAGGCCACA
..........................................................................................................((((((((...))))))))(((.(((((((((((((((.(((....)))...))))...))))))))))).))).........(((....)))...................................................
.........................................................................................................106...........................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)		SRR191607(GSM715717)
192genomic small RNA (size selected RNA from . (breast)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR015448(SRR015448)
cytoplasmic small RNAs. (breast)		SRR015446(SRR015446)
smallRNAs high-throughput sequencing Total. (breast)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR029128(GSM416757)
H520. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR029130(GSM416759)
DLD2. (cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		GSM532886(GSM532886)
G850T. (cervix)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR444062(SRX128910)
Sample 27_3cDNABarcode: AF-PP-343: ACG CTC TT. (skin)
...............................................................................................................................TGGGACGGCGGGTGGG........................................................................................................... 161.000.00------------1.00---------
........TGTCATCTTTTATTTTATA............................................................................................................................................................................................................................... 191.000.00----------------1.00-----
............................................................................................................................................................................................................TTCTCCCAGTAGGCAA.............................. 1640.250.25---------------------0.25