ID: uc001edd.2_intron_1_0_chr1_113503198_f.3p
GENE: (2)
chr1:113510457-113510706+


(1)
AGO2.ip
(1)
B-CELL
(1)
BREAST
(8)
CELL-LINE
(1)
HEART
(2)
OTHER

Sense strand
GAATCCCTGCACCACACAATACCTGTGACACCTGTGCCAAGGTGAGGTCCAGTAGCTACCAAACCTACTTCTGAGCTGCATATTAGAGTGAAGCCTTCCTCCCTACCCTCCCTCTGTCTTACCTTTTGCACAAATCATGGGTTCAGATGTTATACCTATTATTGCACTCTGATAAGTTTTTTTTTTTTTTTTTTTTGCAGTCATGGAATAAGGCCATACCCTGTGGGTAGGGTATAAAGGTTTCCCTCTA
.................................................................................................................((((...((((..((.......)).))))((((((((.(((.....))).))).)))))........................))))..................................................
...............................................................................................................112.....................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189784SRR343334SRR037935(GSM510473)
293cand3. (cell line)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR343332(GSM796035)
"KSHV (HHV8), EBV (HHV-4)". (cell line)
SRR390725(GSM850204)
small rna immunoprecipitated. (cell line)
SRR037937(GSM510475)
293cand2. (cell line)
SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)
............................................................................................................................................................................TAAGTTTTTTTTTTTTTTTGGGT.......................................................239.000.005.004.00-----------
...........................................................................................................................................................................ATAAGTTTTTTTTTTTTTTTGGGC.......................................................246.000.003.003.00-----------
...........................................................................................................................................................................ATAAGTTTTTTTTTTTTTTGGG.........................................................225.000.004.001.00-----------
...........................................................................................................................................................................ATAAGTTTTTTTTTTTTTTTTTGGG......................................................255.000.004.001.00-----------
...........................................................................................................................................................................ATAAGTTTTTTTTTTTTTGGG..........................................................215.000.001.004.00-----------
...........................................................................................................................................................................ATAAGTTTTTTTTTTTTTTTTGGGC......................................................255.000.005.00------------
...........................................................................................................................................................................ATAAGTTTTTTTTTTTTTTTGGGT.......................................................245.000.005.00------------
............................................................................................................................................................................TAAGTTTTTTTTTTTTTTTGGGC.......................................................234.000.003.001.00-----------
...........................................................................................................................................................................ATAAGTTTTTTTTTTTTTTTCGGG.......................................................244.000.003.001.00-----------
...........................................................................................................................................................................ATAAGTTTTTTTTTTTTTTGGGT........................................................234.000.002.002.00-----------
............................................................................................................................................................................TAAGTTTTTTTTTTTTTTTTTCGGG.....................................................253.000.003.00------------
...........................................................................................................................................................................ATAAGTTTTTTTTTTTTTTTTTTTGAGG...................................................283.000.002.001.00-----------
...........................................................................................................................................................................ATAAGTTTTTTTTTTTTTTTTGGGG......................................................253.000.003.00------------
...........................................................................................................................................................................ATAAGTTTTTTTTTTTTTTTGGGG.......................................................243.000.002.001.00-----------
..............................................................................................................................................................................AGTTTTTTTTTTTTTTTTTTTTCGAG..................................................263.000.003.00------------
............................................................................................................................................................................TAAGTTTTTTTTTTTTTGGGT.........................................................213.000.001.002.00-----------
...........................................................................................................................................................................ATAAGTTTTTTTTTTTTTTTTTTTTGGGTT.................................................303.000.003.00------------
...........................................................................................................................................................................ATAAGTTTTTTTTTTTTTGGGT.........................................................222.000.001.001.00-----------
....................................................................................................................TCTTACCTTTTGCACAAATCATG...............................................................................................................2312.002.00---2.00---------
...............................................................................................................................................................................GTTTTTTTTTTTTTTTTTTTTGCGCT.................................................262.000.00-2.00-----------
............................................................................................................................................................................TAAGTTTTTTTTTTTTTGGG..........................................................202.000.001.001.00-----------
...........................................................................................................................................................................ATAAGTTTTTTTTTTTTTTTTTGGGC.....................................................262.000.001.001.00-----------
..............................................................................................................................................................................AGTTTTTTTTTTTTTTTTTTTTGCAGAG................................................282.000.002.00------------
............................................................................................................................................................................TAAGTTTTTTTTTTTTTGGGC.........................................................212.000.001.001.00-----------
..............................................................................................................................................................................AGTTTTTTTTTTTTTTTTTTTTCTTC..................................................262.000.002.00------------
..............................................................................................................................................................................AGTTTTTTTTTTTTTTTTTTTTCAGG..................................................262.000.001.001.00-----------
...........................................................................................................................................................................ATAAGTTTTTTTTTTTTTTTTTGGGT.....................................................262.000.001.001.00-----------
...........................................................................................................................................................................ATAAGTTTTTTTTTTTTTTTTTTTGGGT...................................................282.000.001.001.00-----------
............................................................................................................................................................................TAAGTTTTTTTTTTTTTTTTTTTTCCTC..................................................281.000.001.00------------
...........................................................................................................................................................................ATAAGTTTTTTTTTTTTTTCGGT........................................................231.000.00-1.00-----------
.............................................................................................................................................................................AAGTTTTTTTTTTTTTTTTTTTTGATTT.................................................281.000.001.00------------
..............................................................................................................................................................................AGTTTTTTTTTTTTTTTTTTTTGCCTTC................................................281.000.001.00------------
..............................................................................................................................................................................AGTTTTTTTTTTTTTTTTTTTTGCCC..................................................261.000.00-1.00-----------
...........................................................................................................................................................................ATAAGTTTTTTTTTTTTTTTTGAGG......................................................251.000.00-1.00-----------
...........................................................................................................................................................................ATAAGTTTTTTTTTTTTTTTTTTGGGT....................................................271.000.001.00------------
.........................................................................................................................................................................................TTTTTTTTTTTGCAGTCAGCC............................................211.000.00-1.00-----------
...............................................................................................................................................................................GTTTTTTTTTTTTTTTTTTTTGCGAGG................................................271.000.001.00------------
.........................................................................................................................................TGGGTTCAGATGTTATACCTA............................................................................................2111.001.00----1.00--------
.......................................................................................................................................................ATACCTATTATTGCACTCCC...............................................................................201.000.00--1.00----------
...........................................................................................................................................................................ATAAGTTTTTTTTTTTTTTTTTTTTGAGGC.................................................301.000.001.00------------
...........................................................................................................................................................................ATAAGTTTTTTTTTTTTTTTTTCGGG.....................................................261.000.001.00------------
...........................................................................................................................................................................ATAAGTTTTTTTTTTTTTTTTTTTTGGGTC.................................................301.000.001.00------------
...........................................................................................................................................................................ATAAGTTTTTTTTTTTTGGGT..........................................................211.000.001.00------------
............................................................................................................................................................................TAAGTTTTTTTTTTTTTTTTTTTTGTAGA.................................................291.000.001.00------------
............................................................................................................................................................................TAAGTTTTTTTTTTTTTTTTTTTCGCG...................................................271.000.001.00------------
............................................................................................................................................................................TAAGTTTTTTTTTTTTTTTTTGGGG.....................................................251.000.001.00------------
...........................................................................................................................................................................ATAAGTTTTTTTTTTTTTTTTTGTAA.....................................................261.000.00-----1.00-------
...........................................................................................................................................................................................TTTTTTTTTGCAGTCTAGG............................................191.000.001.00------------
..............................................................................................................................................................................AGTTTTTTTTTTTTTTTTTTTTGCCACC................................................281.000.001.00------------
...........................................................................................................................................................................ATAAGTTTTTTTTTTTGGG............................................................191.000.001.00------------
.........................................................................................................................................................................................TTTTTTTTTTTGCAGTCATGG............................................2111.001.00-1.00-----------
............................................................................................................................................................................TAAGTTTTTTTTTTTTTTTTTTTTGGG...................................................271.000.00-1.00-----------
............................................................................................................................................................................TAAGTTTTTTTTTTTTTTTTTTTTGGGGT.................................................291.000.001.00------------
............................................................................................................................................................................TAAGTTTTTTTTTTTTTTTGTTT.......................................................231.000.001.00------------
...........................................................................................................................................................................ATAAGTTTTTTTTTTTTTTCGGG........................................................231.000.001.00------------
..............................................................................................................................................................................AGTTTTTTTTTTTTTTTTTTTTCGAC..................................................261.000.00-1.00-----------
................................................................................................................................................................................TTTTTTTTTTTTTTTTTTTTGCAGTCTGAG............................................301.000.00-1.00-----------
...........................................................................................................................................................................ATAAGTTTTTTTTTTTTTTTTTTTTGCACTC................................................311.000.001.00------------
.............................................................................................................................................................................AAGTTTTTTTTTTTTTTTTTTTTCTAC..................................................271.000.001.00------------
.............................................................................................................................................................................AAGTTTTTTTTTTTTTTTTTTTTGCAGAG................................................291.000.00-1.00-----------
..............................................................................................................................................................................AGTTTTTTTTTTTTTTTTTTTTCCCG..................................................261.000.00-1.00-----------
.....................................................................................................................................................................................TTTTTTTTTTTTTTTGCAGTCCAGG............................................251.000.001.00------------
.....................................................................................................................................................................................TTTTTTTTTTTTTTTGCAGTCACCC............................................251.000.001.00------------
.........................................................................................................................................TGGGTTCAGATGTTATACATC............................................................................................211.000.00----1.00--------
......................................................................................................................................................................................TTTTTTTTTTTTTTGCAGTCTAGG............................................241.000.00-1.00-----------
...........................................................................................................................................................................ATAAGTTTTTTTTTTTGGGT...........................................................201.000.001.00------------
...............................................................................................................................................................................GTTTTTTTTTTTTTTTTTTTTGCCGGG................................................271.000.00-1.00-----------
.............................................................................................................................................................................AAGTTTTTTTTTTTTTTTTTTTTGAGC..................................................271.000.00-1.00-----------
...........................................................................................................................................................................ATAAGTTTTTTTTTTTTTTGGGC........................................................231.000.001.00------------
....................................................................................................................................................................................TTTTTTTTTTTTTTTTGCAGTCTAGG............................................261.000.001.00------------
.............................................................................................................................................................................AAGTTTTTTTTTTTTTTTTTTTTCTTC..................................................271.000.001.00------------
............................................................................................................................................................................TAAGTTTTTTTTTTTTTTTTTTCGGG....................................................261.000.00-1.00-----------
...........................................................................................................................................................................ATAAGTTTTTTTTTTTTTTTTCCAA......................................................251.000.001.00------------
..............................................................................................................................................................................AGTTTTTTTTTTTTTTTTTTTTGCAGGGGT..............................................301.000.001.00------------
..............................................................................................................................................................................AGTTTTTTTTTTTTTTTTTTTTGCGTTT................................................281.000.00-1.00-----------
...............................................................................................................................................................................GTTTTTTTTTTTTTTTTTTTTGCGGAG................................................271.000.00-----1.00-------
..............................................................................................................................................................................AGTTTTTTTTTTTTTTTTTTTTGCAGCC................................................281.000.00-1.00-----------
............................................................................................................................................................................TAAGTTTTTTTTTTTTTTTTTGGGT.....................................................251.000.00-1.00-----------
.....................................................................................................................................................................................TTTTTTTTTTTTTTTGCAGTCTAGG............................................251.000.001.00------------
..................................................................................................................................................................................TTTTTTTTTTTTTTTTTTGCAGTCGC..............................................261.000.001.00------------
..............................................................................................................................................................................AGTTTTTTTTTTTTTTTTTTTTGCCCT.................................................271.000.001.00------------
.............................................................................................................................................................................AAGTTTTTTTTTTTTTTTTTTTTCTCT..................................................271.000.00-1.00-----------
............................................................................................................................................................................TAAGTTTTTTTTTTTTTTTTTCGCC.....................................................251.000.00-1.00-----------
.............................................................................................................................................................................AAGTTTTTTTTTTTTTTTTTTTTGTTT..................................................271.000.001.00------------
...........................................................................................................................................................................ATAAGTTTTTTTTTTTTTTTTGCA.......................................................241.000.00-1.00-----------
...........................................................................................................................................................................ATAAGTTTTTTTTTTTTTTTTTTTTGGGT..................................................291.000.001.00------------
.......................................................................................GTGAAGCCTTCCTCCCCA.................................................................................................................................................181.000.00-----------1.00-
............................................................................................................................................................................TAAGTTTTTTTTTTTTTTTTTTTGAAG...................................................271.000.00-------1.00-----
....................................................................................................................TCTTACCTTTTGCACAAATCA.................................................................................................................2111.001.00--1.00----------
..............................................................................................................................................................................AGTTTTTTTTTTTTTTTTTTTTCGGC..................................................261.000.001.00------------
............................................................................................................................................................................TAAGTTTTTTTTTTTTTTTTTTAAAC....................................................261.000.001.00------------
...........................................................................................................................................................................ATAAGTTTTTTTTTTTTTGGGC.........................................................221.000.001.00------------
.............................................................................................................................................................................AAGTTTTTTTTTTTTTTTTTTTTGCAGGGCT..............................................311.000.001.00------------
.....................................................................................................................CTTACCTTTTGCACAAATCAT................................................................................................................2111.001.00--1.00----------
...........................................................................................................................................................................ATAAGTTTTTTTTTTTTTTTTTTGGG.....................................................261.000.00-1.00-----------
.............................................................................................................................................................................AAGTTTTTTTTTTTTTTTTTTTTCCG...................................................261.000.001.00------------
..............................................................................................................................................................................AGTTTTTTTTTTTTTTTTTTTTGCCCGC................................................281.000.001.00------------

Antisense strand
GAATCCCTGCACCACACAATACCTGTGACACCTGTGCCAAGGTGAGGTCCAGTAGCTACCAAACCTACTTCTGAGCTGCATATTAGAGTGAAGCCTTCCTCCCTACCCTCCCTCTGTCTTACCTTTTGCACAAATCATGGGTTCAGATGTTATACCTATTATTGCACTCTGATAAGTTTTTTTTTTTTTTTTTTTTGCAGTCATGGAATAAGGCCATACCCTGTGGGTAGGGTATAAAGGTTTCCCTCTA
.................................................................................................................((((...((((..((.......)).))))((((((((.(((.....))).))).)))))........................))))..................................................
...............................................................................................................112.....................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189784SRR343334SRR037935(GSM510473)
293cand3. (cell line)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR343332(GSM796035)
"KSHV (HHV8), EBV (HHV-4)". (cell line)
SRR390725(GSM850204)
small rna immunoprecipitated. (cell line)
SRR037937(GSM510475)
293cand2. (cell line)
SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)
...............................................................................................................................................................TATTGCACTCTGATAAGCTG....................................................................... 202.000.00--2.00----------
..............................................................................................................................................................................CAAAAAAAAAAAAAAAAAAAACT..................................................... 2301.001.00----------1.00--
............................................................................................................................................GTTCAGATGTTATACTCTG........................................................................................... 191.000.00--------1.00----
..............................................................................................................................TGCACAAATCATGGGTGTTT........................................................................................................ 201.000.00------------1.00
.........................................................................................................................................................................................TTTTTTTTTTTGCAGTCTTT............................................. 201.000.00---------1.00---
...............................................................................................................................................................TATTGCACTCTGATAACGG........................................................................ 191.000.00--1.00----------
....................................................................................................................................................................CACTCTGATAAGTTTGTA.................................................................... 181.000.00------1.00------
...............................................................................................................................................................TATTGCACTCTGATAAGCT........................................................................ 191.000.00--1.00----------