ID: uc001eai.1_intron_0_0_chr1_111682930_f.5p
GENE: CEPT1(1)
chr1:111682880-111683129+


(16)
B-CELL
(4)
BRAIN
(13)
BREAST
(26)
CELL-LINE
(5)
CERVIX
(2)
HEART
(3)
HELA
(1)
KIDNEY
(7)
LIVER
(2)
OTHER
(1)
RRP40.ip
(21)
SKIN
(1)
TESTES
(1)
UTERUS
(1)
XRN.ip

Sense strand
CGGCTGGAGTCGGAGGCGATATTTCTAGGGGTGTACTTGTTGGGGTCAGGGTAAGGCTGCGGAGCGCGGTCACCGGACGTGAAGGATTTGAAGGGCGTTGTAGGGGCCAGTGGAGAGAGGACTGGATGCTCTGGGGCGGGTCATTAGGATATAGCTGTGTATGGACTCGCGCGAGGCGAACGCCGTCCTTCTTCCTGGCGCAGGGTGGCCTCGCGCGCGGGGTTGTGGGGAGGCGAGGGGCGACTGCCCC
......................................................(((((((...)))))))....(((((..............))))).......................................................................................................................................................
..................................................51..............................................99......................................................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR207116(GSM721078)
Nuclear RNA. (cell line)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR207110(GSM721072)
Nuclear RNA. (cell line)
SRR033728(GSM497073)
MALT (MALT413). (B cell)
SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)
SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)
DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)
SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)
TAX577740(Rovira)
total RNA. (breast)
SRR553576(SRX182782)
source: Testis. (testes)
DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)
SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)
SRR033719(GSM497064)
6hr Activated B cell line (ABC158). (B cell)
SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)
TAX577739(Rovira)
total RNA. (breast)
SRR033720(GSM497065)
EBV activated B cell line (EBV159). (B cell)
DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR037940(GSM510478)
293cand5_rep2. (cell line)
SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)
SRR015359(GSM380324)
Germinal Center B cell (GC136). (B cell)
SRR207111(GSM721073)
Whole cell RNA. (cell line)
SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)
DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)
SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)
SRR060168(GSM565978)
5-8F_nucleus. (cell line)
SRR037939(GSM510477)
293cand5_rep1. (cell line)
SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)
SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)
SRR033726(GSM497071)
Mututated CLL (CLLM633). (B cell)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)
SRR189784SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)
SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)
SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)
SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)
SRR040010(GSM532895)
G529N. (cervix)
SRR191603(GSM715713)
71genomic small RNA (size selected RNA from t. (breast)
SRR553575(SRX182781)
source: Kidney. (Kidney)
GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR444041(SRX128889)
Sample 2cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)
SRR040021(GSM532906)
G761T_2. (cervix)
DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)
SRR191569(GSM715679)
54genomic small RNA (size selected RNA from t. (breast)
SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)
SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR033710(GSM497055)
GCB DLBCL (GCB385). (B cell)
GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)
DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR191565(GSM715675)
92genomic small RNA (size selected RNA from t. (breast)
SRR189782SRR191593(GSM715703)
62genomic small RNA (size selected RNA from t. (breast)
SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)
SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)
SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)
SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)
SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)
GSM532890(GSM532890)
G576T. (cervix)
SRR191620(GSM715730)
167genomic small RNA (size selected RNA from . (breast)
SRR033732(GSM497077)
bjab cell line (bjab103). (B cell)
SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)
SRR029126(GSM416755)
143B. (cell line)
SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)
SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)
TAX577579(Rovira)
total RNA. (breast)
SRR038860(GSM458543)
MM426. (cell line)
SRR040012(GSM532897)
G648N. (cervix)
SRR191560(GSM715670)
77genomic small RNA (size selected RNA from t. (breast)
SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)
SRR191414(GSM715524)
31genomic small RNA (size selected RNA from t. (breast)
TAX577589(Rovira)
total RNA. (breast)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)
SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)
GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR038856(GSM458539)
D11. (cell line)
SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)
SRR033723(GSM497068)
L1236 cell line (L1236). (B cell)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)
SRR553574(SRX182780)
source: Heart. (Heart)
TAX577743(Rovira)
total RNA. (breast)
SRR191622(GSM715732)
175genomic small RNA (size selected RNA from . (breast)
SRR039611(GSM531974)
Human Normal Liver Tissue Sample 1. (liver)
SRR040015(GSM532900)
G623T. (cervix)
SRR038852(GSM458535)
QF1160MB. (cell line)
SRR038859(GSM458542)
MM386. (cell line)
SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)
SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)
SRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)
DRR001487(DRX001041)
"Hela long nuclear cell fraction, LNA(+)". (hela)
...............GCGATATTTCTAGGGGTG.........................................................................................................................................................................................................................18117.0017.002.00---5.00----1.001.00------1.00------2.00-----------1.00-------------1.00-1.00---------------1.00----------1.00------------------------
.............................................................................CGTGAAGGATTTGAAGGG...........................................................................................................................................................1819.009.002.002.00--3.00-1.00-----------------------------------------------------------1.00-------------------------------------
..........................................GGGTCAGGGTAAGGCTGCGGAGCGCGG.....................................................................................................................................................................................2715.005.00------------------3.00-----------2.00-------------------------------------------------------------------------
..................................................GTAAGGCTGCGGAGCGCG......................................................................................................................................................................................1815.005.00--5.00-----------------------------------------------------------------------------------------------------
....................................................AAGGCTGCGGAGCGCGGT....................................................................................................................................................................................1815.005.00---4.00----------------------------------------------------------------------------1.00-----------------------
........................CTAGGGGTGTACTTGTTGGGG.............................................................................................................................................................................................................2114.004.00------------2.00---2.00---------------------------------------------------------------------------------------
........................CTAGGGGTGTACTTGTTGG...............................................................................................................................................................................................................1914.004.00--------------3.00---------------------------------------------------------------------------------1.00-------
.....................................................................................................................AGGACTGGATGCTCTGGGGC.................................................................................................................2013.003.003.00-------------------------------------------------------------------------------------------------------
...................................CTTGTTGGGGTCAGGGTAA....................................................................................................................................................................................................1913.003.00-------3.00------------------------------------------------------------------------------------------------
.........................................................................................................GCCAGTGGAGAGAGGACTG..............................................................................................................................1913.003.00-----1.00--------------2.00-----------------------------------------------------------------------------------
....................................................................................................................GAGGACTGGATGCTCTGGGGCGGG..............................................................................................................2413.003.00-3.00------------------------------------------------------------------------------------------------------
........................................................................................................................ACTGGATGCTCTGGGGCGGGT.............................................................................................................2113.003.003.00-------------------------------------------------------------------------------------------------------
...................................................TAAGGCTGCGGAGCGCGGT....................................................................................................................................................................................1913.003.00-----------3.00--------------------------------------------------------------------------------------------
............................................................GGAGCGCGGTCACCGGACGT..........................................................................................................................................................................2013.003.00--3.00-----------------------------------------------------------------------------------------------------
....TGGAGTCGGAGGCGATATT...................................................................................................................................................................................................................................1912.002.00-------------------------------------------------------------1.00-----------------------1.00------------------
............................................................................ACGTGAAGGATTTGAAGGG...........................................................................................................................................................1912.002.00------2.00-------------------------------------------------------------------------------------------------
...CTGGAGTCGGAGGCGATATTTC.................................................................................................................................................................................................................................2212.002.00-------------2.00------------------------------------------------------------------------------------------
........GTCGGAGGCGATATTTCTAG..............................................................................................................................................................................................................................2012.002.00-1.00-----------------------------------------------1.00------------------------------------------------------
....TGGAGTCGGAGGCGATATTT..................................................................................................................................................................................................................................2012.002.00-----------------------------1.00---------------------------------------------1.00----------------------------
..............GGCGATATTTCTAGG.............................................................................................................................................................................................................................1512.002.00------2.00-------------------------------------------------------------------------------------------------
........GTCGGAGGCGATATTTCTAGGGGTG.........................................................................................................................................................................................................................2512.002.00-2.00------------------------------------------------------------------------------------------------------
..............................................CAGGGTAAGGCTGCGGAGCGCG......................................................................................................................................................................................2212.002.00-2.00------------------------------------------------------------------------------------------------------
....................................................................................................................................................ATATAGCTGTGTATGGACTCGCGCGAGG..........................................................................2812.002.002.00-------------------------------------------------------------------------------------------------------
..GCTGGAGTCGGAGGCGATAT....................................................................................................................................................................................................................................2012.002.00---------------------------------1.00--------------------------------------------------1.00-------------------
.....GGAGTCGGAGGCGATATT...................................................................................................................................................................................................................................1812.002.00-----1.00-------1.00------------------------------------------------------------------------------------------
...CTGGAGTCGGAGGCGATATT...................................................................................................................................................................................................................................2012.002.002.00-------------------------------------------------------------------------------------------------------
............................................GTCAGGGTAAGGCTGCGGAG..........................................................................................................................................................................................2012.002.00-2.00------------------------------------------------------------------------------------------------------
........GTCGGAGGCGATATTTCTAGG.............................................................................................................................................................................................................................2112.002.001.00--------------------------------------------------------1.00----------------------------------------------
...............GCGATATTTCTAGGGGTGTACTTG...................................................................................................................................................................................................................2412.002.002.00-------------------------------------------------------------------------------------------------------
...........................................................................GACGTGAAGGATTTGAAG.............................................................................................................................................................1812.002.002.00-------------------------------------------------------------------------------------------------------
........GTCGGAGGCGATATTTCTAGGGG...........................................................................................................................................................................................................................2312.002.002.00-------------------------------------------------------------------------------------------------------
..................................................................................AGGATTTGAAGGGCGTTG......................................................................................................................................................1812.002.002.00-------------------------------------------------------------------------------------------------------
..............................................................................GTGAAGGATTTGAAGGGCGT........................................................................................................................................................2012.002.002.00-------------------------------------------------------------------------------------------------------
..................................ACTTGTTGGGGTCAGGG.......................................................................................................................................................................................................1712.002.00-2.00------------------------------------------------------------------------------------------------------
........................................................................................................GGCCAGTGGAGAGAGGACTGGA............................................................................................................................2211.001.00---------------------------------------1.00----------------------------------------------------------------
....................................................................................GATTTGAAGGGCGTTGTAGGGGCCAG............................................................................................................................................2611.001.00-------------------------1.00------------------------------------------------------------------------------
..................................................................CGGTCACCGGACGTGAAGGAT...................................................................................................................................................................2111.001.00-------------------------------------------------------------------------------------------------1.00------
............GAGGCGATATTTCTAGGGG...........................................................................................................................................................................................................................1911.001.00-----1.00--------------------------------------------------------------------------------------------------
.........................TAGGGGTGTACTTGTTGGGGTCAGGGTAA....................................................................................................................................................................................................2911.001.00-----------------------1.00--------------------------------------------------------------------------------
...........................................................CGGAGCGCGGTCACCGGACGTGAAGGA....................................................................................................................................................................2711.001.00----------------------1.00---------------------------------------------------------------------------------
........................................................................................................................ACTGGATGCTCTGGGGCCGGT.............................................................................................................211.000.001.00-------------------------------------------------------------------------------------------------------
..................................................................................................TGTAGGGGCCAGTGGAGAGAGGACTGGACGC.........................................................................................................................311.000.00-------------------------1.00------------------------------------------------------------------------------
...................................CTTGTTGGGGTCAGGGTAAGG..................................................................................................................................................................................................2111.001.00-1.00------------------------------------------------------------------------------------------------------
..................................................GTAAGGCTGCGGAGCGCGGTATTA................................................................................................................................................................................241.000.00-------------------------------------------------------------------------1.00------------------------------
...CTGGAGTCGGAGGCGATA.....................................................................................................................................................................................................................................1811.001.00-----------------------------------------------------------------------------------------1.00--------------
...............GCGATATTTCTAGGGGAG.........................................................................................................................................................................................................................181.000.00--------------------------------------------------------1.00-----------------------------------------------
..................................................GTAAGGCTGCGGAGCGCGGTCACCGGACGTG.........................................................................................................................................................................3111.001.00---------------1.00----------------------------------------------------------------------------------------
..............................................CAGGGTAAGGCTGCGGAGCGCGG.....................................................................................................................................................................................2311.001.00---1.00----------------------------------------------------------------------------------------------------
......GAGTCGGAGGCGATATTT..................................................................................................................................................................................................................................1811.001.00-----------------------------------------------------------------------------1.00--------------------------
....................................................................................................TAGGGGCCAGTGGAGAGAGGACCGG.............................................................................................................................251.000.00--------------------------1.00-----------------------------------------------------------------------------
.GGCTGGAGTCGGAGGCGATA.....................................................................................................................................................................................................................................2011.001.00----1.00---------------------------------------------------------------------------------------------------
................................................................................................................GAGAGAGGACTGGATGCT........................................................................................................................1811.001.00---1.00----------------------------------------------------------------------------------------------------
...............GCGATATTTCTAGGGGTGTA.......................................................................................................................................................................................................................2011.001.00-------1.00------------------------------------------------------------------------------------------------
...........................................................................GACGTGAAGGATTTGAAGGG...........................................................................................................................................................2011.001.001.00-------------------------------------------------------------------------------------------------------
......................................................................................................................................................ATAGCTGTGTATGGACT...................................................................................1711.001.00---------------1.00----------------------------------------------------------------------------------------
..............................................................AGCGCGGTCACCGGACGT..........................................................................................................................................................................1811.001.00---1.00----------------------------------------------------------------------------------------------------
.................................................................................................................AGAGAGGACTGGATGCTCTGGGGCGGG..............................................................................................................2711.001.00-------------------------------------------------------------------------------------------1.00------------
....................ATTTCTAGGGGTGTACTTGT..................................................................................................................................................................................................................2011.001.00------------------------------------------------------------1.00-------------------------------------------
...........................................................................................................................................GTCATTAGGATATAGCTGTGTATGGAC....................................................................................2711.001.00----------------------------------------------------------------------1.00---------------------------------
.......................................................................................................GGGCCAGTGGAGAGAGGACTGG.............................................................................................................................2211.001.00---------------------------------------------------1.00----------------------------------------------------
...................TATTTCTAGGGGTGTACTTGTTGG...............................................................................................................................................................................................................2411.001.00--------------------------------------------------------------------------------------1.00-----------------
..........................................................................................................................................................CTGTGTATGGACTCGCGCGAGG..........................................................................2211.001.00--------------------------------------------------------------------------1.00-----------------------------
..................................................GTAAGGCTGCGGAGCG........................................................................................................................................................................................1611.001.00------------------------------------------------1.00-------------------------------------------------------
...............GCGATATTTCTAGGGGTGTACTTGTTG................................................................................................................................................................................................................2711.001.00-----------------1.00--------------------------------------------------------------------------------------
............................................................................ACGTGAAGGATTTGAAGGGC..........................................................................................................................................................2011.001.00---1.00----------------------------------------------------------------------------------------------------
..............................................CAGGGTAAGGCTGCGGAGC.........................................................................................................................................................................................1911.001.00-1.00------------------------------------------------------------------------------------------------------
.............................................................GAGCGCGGTCACCGGACG...........................................................................................................................................................................1811.001.00-----1.00--------------------------------------------------------------------------------------------------
............................................GTCAGGGTAAGGCTGCGGAGCG........................................................................................................................................................................................2211.001.00----------------------------------------------------------------------------------------------1.00---------
..............GGCGATATTTCTAGGGGTGTA.......................................................................................................................................................................................................................2111.001.00-----------------------------------1.00--------------------------------------------------------------------
............................................................................................................................................................................................TTCTTCCTGGCGCAGACC............................................181.000.00-----------------------------------------------------------1.00--------------------------------------------
..................ATATTTCTAGGGGTGTACTTGTTGT...............................................................................................................................................................................................................251.000.00---------------------------------------------------------------1.00----------------------------------------
.................................TACTTGTTGGGGTCAGGG.......................................................................................................................................................................................................1811.001.001.00-------------------------------------------------------------------------------------------------------
...............................TGTACTTGTTGGGGTCAGGG.......................................................................................................................................................................................................2011.001.00--------1.00-----------------------------------------------------------------------------------------------
.............AGGCGATATTTCTAGGGGTG.........................................................................................................................................................................................................................2011.001.00----------------------------------1.00---------------------------------------------------------------------
..............................................................................................................................................................GTATGGACTCGCGCGAGGCGAA......................................................................2211.001.00-1.00------------------------------------------------------------------------------------------------------
...............GCGATATTTCTAGGGGTGT........................................................................................................................................................................................................................1911.001.00---------------------------------------------------------------------------------------------1.00----------
.........................................GGGGTCAGGGTAAGGCTG...............................................................................................................................................................................................1811.001.00-------------------------------------------------------1.00------------------------------------------------
...........................................................................GACGTGAAGGATTTGAAGGGCGTT.......................................................................................................................................................2411.001.00---------------------------------------------------------------------------------1.00----------------------
..................................................GTAAGGCTGCGGAGCGCGGTCACCGG..............................................................................................................................................................................2611.001.00---------------1.00----------------------------------------------------------------------------------------
..............GGCGATATTTCTAGGGGTGTACTTGT..................................................................................................................................................................................................................2611.001.00-----------------------------1.00--------------------------------------------------------------------------
..................................................GTAAGGCTGCGGAGCGCGG.....................................................................................................................................................................................1911.001.00----------------------------------------1.00---------------------------------------------------------------
..................................ACTTGTTGGGGTCAGGGTAAGGCTGC..............................................................................................................................................................................................2611.001.00-----------------------------------------------------------------------1.00--------------------------------
.........................TAGGGGTGTACTTGTTGGG..............................................................................................................................................................................................................1911.001.00-----------------------------------------------1.00--------------------------------------------------------
.GGCTGGAGTCGGAGGC.........................................................................................................................................................................................................................................1611.001.00------------------------------------------------------1.00-------------------------------------------------
.................................................................................................TTGTAGGGGCCAGTGGAGAG.....................................................................................................................................2011.001.00---------------------------------------------------------------------1.00----------------------------------
..................................ACTTGTTGGGGTCAGGGT......................................................................................................................................................................................................1811.001.00--------------------------------1.00-----------------------------------------------------------------------
...........................................................CGGAGCGCGGTCACCGGA.............................................................................................................................................................................1811.001.00----------1.00---------------------------------------------------------------------------------------------
......GAGTCGGAGGCGATATTTC.................................................................................................................................................................................................................................1911.001.00-------------------------------------------------------------------1.00------------------------------------
............................................................................ACGTGAAGGATTTGAGC.............................................................................................................................................................171.000.00------------------------------------------------------------------------------------------1.00-------------
...............................................AGGGTAAGGCTGCGGAGCGC.......................................................................................................................................................................................2011.001.00---------------------1.00----------------------------------------------------------------------------------
.................................................................................AAGGATTTGAAGGGCGTTGTAGG..................................................................................................................................................2311.001.00------------------------------------------------------------------------1.00-------------------------------
....................................................AAGGCTGCGGAGCGCGG.....................................................................................................................................................................................1711.001.00----------------------------------------------------------1.00---------------------------------------------
.......................................................GCTGCGGAGCGCGGTCACCGGA.............................................................................................................................................................................2211.001.00---1.00----------------------------------------------------------------------------------------------------
..............................................................................GTGAAGGATTTGAAGGGCGTTG......................................................................................................................................................2211.001.00----------------------------------------------------------------------------------------1.00---------------
..GCTGGAGTCGGAGGCAG.......................................................................................................................................................................................................................................1731.000.33-------------------------------------1.00------------------------------------------------------------------
..............................................CAGGGTAAGGCTGCGGAG..........................................................................................................................................................................................1811.001.00-----1.00--------------------------------------------------------------------------------------------------
...........................................................................GACGTGAAGGATTTGAAGGGCG.........................................................................................................................................................2211.001.00---1.00----------------------------------------------------------------------------------------------------
................................................................CGCGGTCACCGGACGTGAAGGATTTGAAGGGC..........................................................................................................................................................3211.001.00-----------------------------------------------------------------------------------1.00--------------------
.........................................................................................................................................................................................................................CGGGGTTGTGGGGAGTA................171.000.00---------------------1.00----------------------------------------------------------------------------------
..........................................GGGTCAGGGTAAGGCTGC..............................................................................................................................................................................................1811.001.00----------------------------1.00---------------------------------------------------------------------------
................................................................................................................................................................ATGGACTCGCGCGAGGCGAAC.....................................................................2111.001.00-1.00------------------------------------------------------------------------------------------------------
..................................................................................................................................................GGATATAGCTGTGTATGGACTCGCGC..............................................................................2611.001.00---------1.00----------------------------------------------------------------------------------------------
...CTGGAGTCGGAGGCGATAT....................................................................................................................................................................................................................................1911.001.00---------------------------------------------1.00----------------------------------------------------------
.........................................................................................................................................................................................................................CGGGGTTGTGGGGAGCGA...............181.000.00---------------------------1.00----------------------------------------------------------------------------
................................................................................................................................CTCTGGGGCGGGTCATTAGGATAGCTG...............................................................................................271.000.00--------------------------1.00-----------------------------------------------------------------------------
..........................AGGGGTGTACTTGTTGGGG.............................................................................................................................................................................................................1911.001.00--------------------------------------------------------------1.00-----------------------------------------
................................................................................................................................................TAGGATATAGCTGTGTATGGACTCGC................................................................................2611.001.00---------1.00----------------------------------------------------------------------------------------------
.........................................................TGCGGAGCGCGGTCACCGGACGTGA........................................................................................................................................................................2511.001.00---------1.00----------------------------------------------------------------------------------------------
...CTGGAGTCGGAGGCGATATTT..................................................................................................................................................................................................................................2111.001.00-----------------------------------------------------------------------------------------------1.00--------
....TGGAGTCGGAGGCGATAT....................................................................................................................................................................................................................................1811.001.00-------------------------------------------1.00------------------------------------------------------------
.............................................................................................................................................................TGTATGGACTCGCGCGAGGCGAA......................................................................2311.001.00-----------------------------------------1.00--------------------------------------------------------------
..............................................CAGGGTAAGGCTGCGGAGCG........................................................................................................................................................................................2011.001.00-1.00------------------------------------------------------------------------------------------------------
......................................................................................................................................................................................................................GCGCGGGGTTGTGGGATC..................181.000.00-------1.00------------------------------------------------------------------------------------------------
.....GGAGTCGGAGGCGATATTT..................................................................................................................................................................................................................................1911.001.00--------1.00-----------------------------------------------------------------------------------------------
..............................................................................................................TGGAGAGAGGACTGGATG..........................................................................................................................1821.001.00---------------------------------0.50-----------------------------------------------------------------0.50----
.............................................................................CGTGAAGGATTTGAAGGGCG.........................................................................................................................................................2011.001.00-1.00------------------------------------------------------------------------------------------------------
........GTCGGAGGCGATATTTCTAGGGGTGTA.......................................................................................................................................................................................................................2711.001.00-------------------1.00------------------------------------------------------------------------------------
............................................GTCAGGGTAAGGCTGCGGA...........................................................................................................................................................................................1911.001.00----------------------------------------------------------------------------1.00---------------------------
........................................TGGGGTCAGGGTAAGGCTG...............................................................................................................................................................................................1911.001.00------------------------------------------------------------------------------1.00-------------------------
.........................................................TGCGGAGCGCGGTCACCGGACGTGAA.......................................................................................................................................................................2611.001.00---------------------------------------------------------------------------------------1.00----------------
.........................................................................................GAAGGGCGTTGTAGGGGC...............................................................................................................................................1811.001.00-------------------1.00------------------------------------------------------------------------------------
..GCTGGAGTCGGAGGCGAT......................................................................................................................................................................................................................................1811.001.00---1.00----------------------------------------------------------------------------------------------------
................................................................................................................................................................ATGGACTCGCGCGAGGCGCAC.....................................................................211.000.00-1.00------------------------------------------------------------------------------------------------------
...................................................................................................................................................................................................TGGCGCAGGGTGGCCTCG.....................................1811.001.00-----------------------------------------------------------------1.00--------------------------------------
...............................................AGGGTAAGGCTGCGGAGCG........................................................................................................................................................................................1911.001.00-------------------------------1.00------------------------------------------------------------------------
...............................................................................................CGTTGTAGGGGCCAGTGG.........................................................................................................................................1811.001.00-1.00------------------------------------------------------------------------------------------------------
.......................................................................ACCGGACGTGAAGGATTTGAAGGGCGTTGT.....................................................................................................................................................3011.001.00----------1.00---------------------------------------------------------------------------------------------
.............AGGCGATATTTCTAGGGGTGTACTTG...................................................................................................................................................................................................................2611.001.001.00-------------------------------------------------------------------------------------------------------
.........TCGGAGGCGATATTTCTAGGGG...........................................................................................................................................................................................................................2211.001.00--------------------------------------1.00-----------------------------------------------------------------
......................................................GGCTGCGGAGCGCGGGGT..................................................................................................................................................................................181.000.00--------1.00-----------------------------------------------------------------------------------------------
................................................................................GAAGGATTTGAAGGGCGTTGT.....................................................................................................................................................2111.001.00---------------------------1.00----------------------------------------------------------------------------
..................................ACTTGTTGGGGTCAGGGTA.....................................................................................................................................................................................................1911.001.00-1.00------------------------------------------------------------------------------------------------------
.GGCTGGAGTCGGAGGCGATATTA..................................................................................................................................................................................................................................231.000.00--------------------------------------------------------------------------------------------1.00-----------
...........................................................................................................................................GTCATTAGGATATAGCTGTG...........................................................................................2011.001.00-1.00------------------------------------------------------------------------------------------------------
.........................TAGGGGTGTACTTGTTGG...............................................................................................................................................................................................................1811.001.00-----------------------------------------------------1.00--------------------------------------------------
.................................................................................................................................................AGGATATAGCTGTGTATG.......................................................................................1811.001.00-1.00------------------------------------------------------------------------------------------------------
.......................................................................................TTGAAGGGCGTTGTAGG..................................................................................................................................................1720.500.50--------------------------------0.50-----------------------------------------------------------------------
.........................................GGGGTCAGGGTAAGGC.................................................................................................................................................................................................1620.500.50----------------------------------0.50---------------------------------------------------------------------
..GCTGGAGTCGGAGGC.........................................................................................................................................................................................................................................1530.330.33----------------------------------------------------------------------------------------------------0.33---
........................................................................................................................................................AGCTGTGTATGGACT...................................................................................1540.250.25------------------------------------------------------------------------------------------------------0.25-
.................................................................................................TTGTAGGGGCCAGTG..........................................................................................................................................1570.140.14----------0.14---------------------------------------------------------------------------------------------

Antisense strand
CGGCTGGAGTCGGAGGCGATATTTCTAGGGGTGTACTTGTTGGGGTCAGGGTAAGGCTGCGGAGCGCGGTCACCGGACGTGAAGGATTTGAAGGGCGTTGTAGGGGCCAGTGGAGAGAGGACTGGATGCTCTGGGGCGGGTCATTAGGATATAGCTGTGTATGGACTCGCGCGAGGCGAACGCCGTCCTTCTTCCTGGCGCAGGGTGGCCTCGCGCGCGGGGTTGTGGGGAGGCGAGGGGCGACTGCCCC
......................................................(((((((...)))))))....(((((..............))))).......................................................................................................................................................
..................................................51..............................................99......................................................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR207116(GSM721078)
Nuclear RNA. (cell line)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR207110(GSM721072)
Nuclear RNA. (cell line)
SRR033728(GSM497073)
MALT (MALT413). (B cell)
SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)
SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)
DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)
SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)
TAX577740(Rovira)
total RNA. (breast)
SRR553576(SRX182782)
source: Testis. (testes)
DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)
SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)
SRR033719(GSM497064)
6hr Activated B cell line (ABC158). (B cell)
SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)
TAX577739(Rovira)
total RNA. (breast)
SRR033720(GSM497065)
EBV activated B cell line (EBV159). (B cell)
DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR037940(GSM510478)
293cand5_rep2. (cell line)
SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)
SRR015359(GSM380324)
Germinal Center B cell (GC136). (B cell)
SRR207111(GSM721073)
Whole cell RNA. (cell line)
SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)
DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)
SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)
SRR060168(GSM565978)
5-8F_nucleus. (cell line)
SRR037939(GSM510477)
293cand5_rep1. (cell line)
SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)
SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)
SRR033726(GSM497071)
Mututated CLL (CLLM633). (B cell)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)
SRR189784SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)
SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)
SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)
SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)
SRR040010(GSM532895)
G529N. (cervix)
SRR191603(GSM715713)
71genomic small RNA (size selected RNA from t. (breast)
SRR553575(SRX182781)
source: Kidney. (Kidney)
GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR444041(SRX128889)
Sample 2cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)
SRR040021(GSM532906)
G761T_2. (cervix)
DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)
SRR191569(GSM715679)
54genomic small RNA (size selected RNA from t. (breast)
SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)
SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR033710(GSM497055)
GCB DLBCL (GCB385). (B cell)
GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)
DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR191565(GSM715675)
92genomic small RNA (size selected RNA from t. (breast)
SRR189782SRR191593(GSM715703)
62genomic small RNA (size selected RNA from t. (breast)
SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)
SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)
SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)
SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)
SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)
GSM532890(GSM532890)
G576T. (cervix)
SRR191620(GSM715730)
167genomic small RNA (size selected RNA from . (breast)
SRR033732(GSM497077)
bjab cell line (bjab103). (B cell)
SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)
SRR029126(GSM416755)
143B. (cell line)
SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)
SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)
TAX577579(Rovira)
total RNA. (breast)
SRR038860(GSM458543)
MM426. (cell line)
SRR040012(GSM532897)
G648N. (cervix)
SRR191560(GSM715670)
77genomic small RNA (size selected RNA from t. (breast)
SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)
SRR191414(GSM715524)
31genomic small RNA (size selected RNA from t. (breast)
TAX577589(Rovira)
total RNA. (breast)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)
SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)
GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR038856(GSM458539)
D11. (cell line)
SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)
SRR033723(GSM497068)
L1236 cell line (L1236). (B cell)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)
SRR553574(SRX182780)
source: Heart. (Heart)
TAX577743(Rovira)
total RNA. (breast)
SRR191622(GSM715732)
175genomic small RNA (size selected RNA from . (breast)
SRR039611(GSM531974)
Human Normal Liver Tissue Sample 1. (liver)
SRR040015(GSM532900)
G623T. (cervix)
SRR038852(GSM458535)
QF1160MB. (cell line)
SRR038859(GSM458542)
MM386. (cell line)
SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)
SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)
SRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)
DRR001487(DRX001041)
"Hela long nuclear cell fraction, LNA(+)". (hela)
.........................................................................................................................................................................................CTGCGCCAGGAAGAAGGA............................................... 1818.008.00-1.005.00----------------------------1.00--------------------------------1.00---------------------------------------
...................................................................................................................................................................................CAGGAAGAAGGACGGCGT..................................................... 1812.002.00-2.00------------------------------------------------------------------------------------------------------
......................................................................................................................................................................................CCTGCGCCAGGAAGAAGGACGG.............................................. 2211.001.00-----------------1.00--------------------------------------------------------------------------------------
......................................................................................................................................................................................TGCGCCAGGAAGAAGGACGG................................................ 2011.001.001.00-------------------------------------------------------------------------------------------------------
........................................................................................................................................................................................................CCGCGCGCGAGGCCACCCTG.............................. 2011.001.00-----------------------1.00--------------------------------------------------------------------------------
.........................................................................CCTTCAAATCCTTCACGTCCG............................................................................................................................................................ 2111.001.00----------------------------1.00---------------------------------------------------------------------------
...................................................................CCCTTCAAATCCTTCACGTCCGGTGACC........................................................................................................................................................... 2811.001.00----------------------------------------------------------------------------------1.00---------------------
......................................................................................................................................................................................CGCCAGGAAGAAGGACGG.................................................. 1811.001.00-1.00------------------------------------------------------------------------------------------------------
....................................................................................................................................................................................GGAAGAAGGACGGCG....................................................... 1530.330.33-----------------------------------------------------------------------------------------------------0.33--
............................................................................................................................................................................................CTGCGCCAGGAAGAA............................................... 1540.250.25-------------------------------------------------------------------------------------------------------0.25