uc001eai.1_intron_0_0_chr1_111682930

TTTTTTGCTTAAAGTTGAGGTTATACACTTTCAATAAGAACTAGAACCAAAATCAGGTCCCTCCTTTTCTGGTCCTGTTTGATACTTACTACTTTATTGACAATTTGATTTTTTGTTTCCTAATTTGTTAATATTGGCATAAGATGTAAATAGTGGCCAACAAGTGTATTTTTTAATTTTTATTTTATTTTATTTTTTAGGTAAGCACCAGCCACAAAAACCTACAAAAGAAGGGAAATTACTGTCTTTA ..........................................................................................................................((((((......((((.((..((....))..))))))))))))..................................................................................... ...................................................................................................100..................................................................................................200................................................	Size	Perfect hit	Total Norm	Perfect Norm	SRR189776(GSM714636) cell line: HEK293clip variant: CLIPenzymatic . (cell line)	SRR189775(GSM714635) cell line: HEK293clip variant: CLIPenzymatic . (cell line)	SRR189777(GSM714637) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)	SRR189778(GSM714638) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)	SRR189780(GSM714640) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)	SRR189781(GSM714641) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)	SRR207112(GSM721074) RRP40 knockdown. (RRP40 cell line)	SRR033727(GSM497072) HIV-positive DL (HIV412). (B cell)	SRR189779(GSM714639) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)	SRR330906(SRX091744) tissue: normal skindisease state: normal. (skin)	GSM359192(GSM359192) HepG2_3pM_6. (cell line)	SRR039622(GSM531985) HCV(+) Adjacent Tissue Sample. (liver)	SRR330895(SRX091733) tissue: skin psoriatic uninvolveddisease stat. (skin)
.......................................................................................................................................................................ATTTTTTAATTTTTATTTTATTTTATTTTTTAG..................................................	33	1	22.00	22.00	7.00	9.00	4.00	2.00	-	-	-	-	-	-	-	-	-
......................................................................................................................................................................TATTTTTTAATTTTTATTTTATTTTATTTTTTAG..................................................	34	1	16.00	16.00	7.00	6.00	3.00	-	-	-	-	-	-	-	-	-	-
...............................................................................................................................................................................ATTTTTATTTTATTTTATTTTTTCTTG................................................	27		9.00	0.00	6.00	-	1.00	2.00	-	-	-	-	-	-	-	-	-
...............................................................................................................................................................................ATTTTTATTTTATTTTATTTTTTCG..................................................	25		4.00	0.00	2.00	2.00	-	-	-	-	-	-	-	-	-	-	-
...............................................................................................................................................................................ATTTTTATTTTATTTTATTTTTTATTCT...............................................	28		3.00	0.00	1.00	2.00	-	-	-	-	-	-	-	-	-	-	-
................................................................................................................................................................................TTTTTATTTTATTTTATTTTTTCTAG................................................	26		3.00	0.00	-	-	1.00	1.00	1.00	-	-	-	-	-	-	-	-
................................................................................................................................................................................TTTTTATTTTATTTTATTTTCTTG..................................................	24		3.00	0.00	-	-	2.00	1.00	-	-	-	-	-	-	-	-	-
.......................................................................................................................................................................ATTTTTTAATTTTTATTTTATTTTTTAG.......................................................	28		3.00	0.00	1.00	1.00	-	1.00	-	-	-	-	-	-	-	-	-
................................................................................................................................................................................TTTTTATTTTATTTTATTTTTTCAAG................................................	26		2.00	0.00	-	2.00	-	-	-	-	-	-	-	-	-	-	-
........................................................................................................TTGATTTTTTGTTTCGGTC...............................................................................................................................	19		2.00	0.00	-	-	-	-	-	-	2.00	-	-	-	-	-	-
..............................................................................................................................................................................................................................TACAAAAGAAGGGAAATTACTG......	22	1	2.00	2.00	-	-	-	-	-	-	-	2.00	-	-	-	-	-
................................................................................................................................................................................TTTTTATTTTATTTTATTCTCG....................................................	22		2.00	0.00	1.00	-	1.00	-	-	-	-	-	-	-	-	-	-
................................................................................................................................................................................TTTTTATTTTATTTTATTTTTTCTTG................................................	26		2.00	0.00	-	1.00	1.00	-	-	-	-	-	-	-	-	-	-
.......................................................................................................................................................................ATTTTTTAATTTTTATTTTATTTTATTTTTTA...................................................	32	2	1.00	1.00	-	1.00	-	-	-	-	-	-	-	-	-	-	-
......................................................................................................................................................................TATTTTTTAATTTTTATTTTATTTTATTTTTTAA..................................................	34		1.00	0.00	-	1.00	-	-	-	-	-	-	-	-	-	-	-
.......................................................................................................................................................................ATTTTTTAATTTTTATTTTATTTTATTTTTTTAG.................................................	34		1.00	0.00	1.00	-	-	-	-	-	-	-	-	-	-	-	-
...............................................................................................................................................................................ATTTTTATTTTATTTTATTCAG.....................................................	22		1.00	0.00	-	-	-	1.00	-	-	-	-	-	-	-	-	-
............................................................................................................................................................................TTAATTTTTATTTTATTTTATTTTTTCTG.................................................	29		1.00	0.00	-	-	1.00	-	-	-	-	-	-	-	-	-	-
...............................................................................................................................................................................ATTTTTATTTTATTTTATTTTCTTG..................................................	25		1.00	0.00	-	-	-	1.00	-	-	-	-	-	-	-	-	-
................................................................................................................................................................................TTTTTATTTTATTTTATTTGTGT...................................................	23		1.00	0.00	-	-	-	-	-	1.00	-	-	-	-	-	-	-
..........................................................................................................................................................................TTTTAATTTTTATTTTATTTCCTG........................................................	24		1.00	0.00	-	-	1.00	-	-	-	-	-	-	-	-	-	-
..............................................................................................................................................................................AATTTTTATTTTATTTTATTTTTTCG..................................................	26		1.00	0.00	-	-	1.00	-	-	-	-	-	-	-	-	-	-
...............................................................................................................................................................................ATTTTTATTTTATTTTATTTTTCAGG.................................................	26		1.00	0.00	-	-	-	-	-	-	-	-	1.00	-	-	-	-
..............................................................................................................................................................................AATTTTTATTTTATTTTATTTCCAG...................................................	25		1.00	0.00	-	-	1.00	-	-	-	-	-	-	-	-	-	-
......................................................................................................................................................................TATTTTTTAATTTTTATTTTATTTTTTAG.......................................................	29		1.00	0.00	1.00	-	-	-	-	-	-	-	-	-	-	-	-
.......................................................................................................................................................................ATTTTTTAATTTTTATTTTATTTTTTAA.......................................................	28		1.00	0.00	1.00	-	-	-	-	-	-	-	-	-	-	-	-
........................................................................................................................................................................TTTTTTAATTTTTATTTTATTTAAG.........................................................	25		1.00	0.00	1.00	-	-	-	-	-	-	-	-	-	-	-	-
................................................................................................................................................................................TTTTTATTTTATTTTATTCCT.....................................................	21		1.00	0.00	-	-	-	1.00	-	-	-	-	-	-	-	-	-
.........................................................................................................................................................................................................................AAACCTACAAAAGAAGGGAAA............	21	1	1.00	1.00	-	-	-	-	-	-	-	-	-	-	1.00	-	-
....................................................................................................................................................................................................................................AGAAGGGAAATTACTGTCTTTA	22	1	1.00	1.00	-	-	-	-	-	-	-	-	-	-	-	1.00	-
................................................................................................................................................................................TTTTTATTTTATTTTATTTGATC...................................................	23		1.00	0.00	1.00	-	-	-	-	-	-	-	-	-	-	-	-
...............................................................................................................................................................................ATTTTTATTTTATTTTATTTTTTCTCC................................................	27		1.00	0.00	-	-	-	1.00	-	-	-	-	-	-	-	-	-
.............................................................................................................................................................................TAATTTTTATTTTATTTTATTTTTCTG..................................................	27		1.00	0.00	-	-	1.00	-	-	-	-	-	-	-	-	-	-
..............................................................................................................................................................................AATTTTTATTTTATTTTATTTTTTTTCG................................................	28		1.00	0.00	-	-	-	1.00	-	-	-	-	-	-	-	-	-
..............................................................................................................................................................................AATTTTTATTTTATTTTATTTTTTTATG................................................	28		1.00	0.00	-	1.00	-	-	-	-	-	-	-	-	-	-	-
...............................................................................................................................................................................ATTTTTATTTTATTTTATTTTTTACTTC...............................................	28		1.00	0.00	-	-	-	-	1.00	-	-	-	-	-	-	-	-
...............................................................................................................................................................................ATTTTTATTTTATTTTATTTTTTCTGG................................................	27		1.00	0.00	-	-	-	-	-	-	-	-	1.00	-	-	-	-
................................................................................................................................................................................TTTTTATTTTATTTTATTTCATG...................................................	23		1.00	0.00	-	-	-	1.00	-	-	-	-	-	-	-	-	-
......................................................................................................................................................................TATTTTTTAATTTTTATTTTATTTTATTTTCTAG..................................................	34		1.00	0.00	-	-	1.00	-	-	-	-	-	-	-	-	-	-
......................................................................................................................................................................................TTTTATTTTATTTTTTAGGGACT.............................................	23		1.00	0.00	-	-	-	-	1.00	-	-	-	-	-	-	-	-
.........................................................................................................................................................................TTTTTAATTTTTATTTTATTTTATTTTTTTAG.................................................	32		1.00	0.00	1.00	-	-	-	-	-	-	-	-	-	-	-	-
...............................................................................................................................................................................ATTTTTATTTTATTTTATTCTG.....................................................	22		1.00	0.00	-	-	-	1.00	-	-	-	-	-	-	-	-	-
........................................................................................................................................................................TTTTTTAATTTTTATTTTATTTTCATT.......................................................	27		1.00	0.00	-	-	-	-	1.00	-	-	-	-	-	-	-	-
................................................................TTTTCTGGTCCTGTTTGA........................................................................................................................................................................	18	1	1.00	1.00	-	-	-	-	-	-	-	-	-	1.00	-	-	-
......................................................................................................................................................................TATTTTTTAATTTTTATTTTATTTTATTTTTCAG..................................................	34		1.00	0.00	-	-	-	1.00	-	-	-	-	-	-	-	-	-
...............................................................................................................................................................................ATTTTTATTTTATTTTATTTTTTAGTCC...............................................	28		1.00	0.00	-	-	-	-	1.00	-	-	-	-	-	-	-	-
............................................................................................................................................................................TTAATTTTTATTTTATTTTATTTTCAG...................................................	27		1.00	0.00	-	-	1.00	-	-	-	-	-	-	-	-	-	-
...........................................................................................................................................................................TTTAATTTTTATTTTATTTTATTTCTG....................................................	27		1.00	0.00	-	-	-	1.00	-	-	-	-	-	-	-	-	-
................................................................................................................................................................................TTTTTATTTTATTTTATTTTTTACACG...............................................	27		1.00	0.00	-	-	-	1.00	-	-	-	-	-	-	-	-	-
................................................................................................................................................................................TTTTTATTTTATTTTATTTTTTAGTCA...............................................	27		1.00	0.00	-	-	-	1.00	-	-	-	-	-	-	-	-	-
.........................................................................................................................................................................TTTTTAATTTTTATTTTATTTTATTTTTTAG..................................................	31	3	0.33	0.33	0.33	-	-	-	-	-	-	-	-	-	-	-	-
..........................................................................................................................................................................TTTTAATTTTTATTTTATTTTATTTTTTAG..................................................	30	3	0.33	0.33	-	-	-	0.33	-	-	-	-	-	-	-	-	-
.............................................................................................................................................................................................................................CTACAAAAGAAGGGAAA............	17	5	0.20	0.20	-	-	-	-	-	-	-	-	-	-	-	-	0.20
..................................................................................................................................................................................TTTATTTTATTTTATTTTTTAGG.................................................	23	7	0.14	0.14	-	-	-	-	0.14	-	-	-	-	-	-	-	-

TTTTTTGCTTAAAGTTGAGGTTATACACTTTCAATAAGAACTAGAACCAAAATCAGGTCCCTCCTTTTCTGGTCCTGTTTGATACTTACTACTTTATTGACAATTTGATTTTTTGTTTCCTAATTTGTTAATATTGGCATAAGATGTAAATAGTGGCCAACAAGTGTATTTTTTAATTTTTATTTTATTTTATTTTTTAGGTAAGCACCAGCCACAAAAACCTACAAAAGAAGGGAAATTACTGTCTTTA
..........................................................................................................................((((((......((((.((..((....))..)))))))))))).....................................................................................
...................................................................................................100..................................................................................................200................................................

Size

Perfect hit

Total Norm

Perfect Norm

SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)

SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)

SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)

SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)

SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)

SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)

SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)

SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)

SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)

SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)

GSM359192(GSM359192)
HepG2_3pM_6. (cell line)

SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)

SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)

.......................................................................................................................................................................ATTTTTTAATTTTTATTTTATTTTATTTTTTAG..................................................

22.00

7.00

9.00

4.00

2.00

......................................................................................................................................................................TATTTTTTAATTTTTATTTTATTTTATTTTTTAG..................................................

16.00

7.00

6.00

3.00

...............................................................................................................................................................................ATTTTTATTTTATTTTATTTTTTCTTG................................................

9.00

0.00

6.00

1.00

2.00

...............................................................................................................................................................................ATTTTTATTTTATTTTATTTTTTCG..................................................

4.00

0.00

2.00

...............................................................................................................................................................................ATTTTTATTTTATTTTATTTTTTATTCT...............................................

3.00

0.00

1.00

2.00

................................................................................................................................................................................TTTTTATTTTATTTTATTTTTTCTAG................................................

3.00

0.00

1.00

................................................................................................................................................................................TTTTTATTTTATTTTATTTTCTTG..................................................

3.00

0.00

2.00

1.00

.......................................................................................................................................................................ATTTTTTAATTTTTATTTTATTTTTTAG.......................................................

3.00

0.00

1.00

................................................................................................................................................................................TTTTTATTTTATTTTATTTTTTCAAG................................................

2.00

0.00

2.00

........................................................................................................TTGATTTTTTGTTTCGGTC...............................................................................................................................

2.00

0.00

2.00

..............................................................................................................................................................................................................................TACAAAAGAAGGGAAATTACTG......

2.00

................................................................................................................................................................................TTTTTATTTTATTTTATTCTCG....................................................

2.00

0.00

1.00

................................................................................................................................................................................TTTTTATTTTATTTTATTTTTTCTTG................................................

2.00

0.00

1.00

.......................................................................................................................................................................ATTTTTTAATTTTTATTTTATTTTATTTTTTA...................................................

1.00

......................................................................................................................................................................TATTTTTTAATTTTTATTTTATTTTATTTTTTAA..................................................

1.00

0.00

1.00

.......................................................................................................................................................................ATTTTTTAATTTTTATTTTATTTTATTTTTTTAG.................................................

1.00

0.00

1.00

...............................................................................................................................................................................ATTTTTATTTTATTTTATTCAG.....................................................

1.00

0.00

1.00

............................................................................................................................................................................TTAATTTTTATTTTATTTTATTTTTTCTG.................................................

1.00

0.00

1.00

...............................................................................................................................................................................ATTTTTATTTTATTTTATTTTCTTG..................................................

1.00

0.00

1.00

................................................................................................................................................................................TTTTTATTTTATTTTATTTGTGT...................................................

1.00

0.00

1.00

..........................................................................................................................................................................TTTTAATTTTTATTTTATTTCCTG........................................................

1.00

0.00

1.00

..............................................................................................................................................................................AATTTTTATTTTATTTTATTTTTTCG..................................................

1.00

0.00

1.00

...............................................................................................................................................................................ATTTTTATTTTATTTTATTTTTCAGG.................................................

1.00

0.00

1.00

..............................................................................................................................................................................AATTTTTATTTTATTTTATTTCCAG...................................................

1.00

0.00

1.00

......................................................................................................................................................................TATTTTTTAATTTTTATTTTATTTTTTAG.......................................................

1.00

0.00

1.00

.......................................................................................................................................................................ATTTTTTAATTTTTATTTTATTTTTTAA.......................................................

1.00

0.00

1.00

........................................................................................................................................................................TTTTTTAATTTTTATTTTATTTAAG.........................................................

1.00

0.00

1.00

................................................................................................................................................................................TTTTTATTTTATTTTATTCCT.....................................................

1.00

0.00

1.00

.........................................................................................................................................................................................................................AAACCTACAAAAGAAGGGAAA............

1.00

....................................................................................................................................................................................................................................AGAAGGGAAATTACTGTCTTTA

1.00

................................................................................................................................................................................TTTTTATTTTATTTTATTTGATC...................................................

1.00

0.00

1.00

...............................................................................................................................................................................ATTTTTATTTTATTTTATTTTTTCTCC................................................

1.00

0.00

1.00

.............................................................................................................................................................................TAATTTTTATTTTATTTTATTTTTCTG..................................................

1.00

0.00

1.00

..............................................................................................................................................................................AATTTTTATTTTATTTTATTTTTTTTCG................................................

1.00

0.00

1.00

..............................................................................................................................................................................AATTTTTATTTTATTTTATTTTTTTATG................................................

1.00

0.00

1.00

...............................................................................................................................................................................ATTTTTATTTTATTTTATTTTTTACTTC...............................................

1.00

0.00

1.00

...............................................................................................................................................................................ATTTTTATTTTATTTTATTTTTTCTGG................................................

1.00

0.00

1.00

................................................................................................................................................................................TTTTTATTTTATTTTATTTCATG...................................................

1.00

0.00

1.00

......................................................................................................................................................................TATTTTTTAATTTTTATTTTATTTTATTTTCTAG..................................................

1.00

0.00

1.00

......................................................................................................................................................................................TTTTATTTTATTTTTTAGGGACT.............................................

1.00

0.00

1.00

.........................................................................................................................................................................TTTTTAATTTTTATTTTATTTTATTTTTTTAG.................................................

1.00

0.00

1.00

...............................................................................................................................................................................ATTTTTATTTTATTTTATTCTG.....................................................

1.00

0.00

1.00

........................................................................................................................................................................TTTTTTAATTTTTATTTTATTTTCATT.......................................................

1.00

0.00

1.00

................................................................TTTTCTGGTCCTGTTTGA........................................................................................................................................................................

1.00

......................................................................................................................................................................TATTTTTTAATTTTTATTTTATTTTATTTTTCAG..................................................

1.00

0.00

1.00

...............................................................................................................................................................................ATTTTTATTTTATTTTATTTTTTAGTCC...............................................

1.00

0.00

1.00

............................................................................................................................................................................TTAATTTTTATTTTATTTTATTTTCAG...................................................

1.00

0.00

1.00

...........................................................................................................................................................................TTTAATTTTTATTTTATTTTATTTCTG....................................................

1.00

0.00

1.00

................................................................................................................................................................................TTTTTATTTTATTTTATTTTTTACACG...............................................

1.00

0.00

1.00

................................................................................................................................................................................TTTTTATTTTATTTTATTTTTTAGTCA...............................................

1.00

0.00

1.00

.........................................................................................................................................................................TTTTTAATTTTTATTTTATTTTATTTTTTAG..................................................

0.33

..........................................................................................................................................................................TTTTAATTTTTATTTTATTTTATTTTTTAG..................................................

0.33

.............................................................................................................................................................................................................................CTACAAAAGAAGGGAAA............

0.20

..................................................................................................................................................................................TTTATTTTATTTTATTTTTTAGG.................................................

0.14