ID: uc001dyz.1_intron_7_0_chr1_110584484_f.3p
GENE: FAM40A(8)
chr1:110585510-110585759+


(1)
B-CELL 		(1)
BRAIN 		(1)
BREAST 		(27)
CELL-LINE 		(2)
FIBROBLAST 		(1)
HEART 		(3)
HELA 		(1)
KIDNEY 		(1)
LIVER 		(4)
OTHER 		(1)
RRP40.ip 		(18)
SKIN 		(1)
TESTES 		(1)
UTERUS 		(2)
XRN.ip

Sense strand
CTTGTTCCTTTTTCTCCTTTCCCTTGCGGATGTCACGGAATTCTCCTTGGGAGTGGCTTCAGTCCATTGTTCAGGAGTTGCCTGGGTCTCTATAAAGACATGGGTCATGATGTCATGAATGTTTCTGAGCCTGACACAATGGTCAGGGGCCAGCCTGTGGACACATTGACCCTGGCTCTGCTTCCCTGTCTGTGATGCAGTGCACGCTAGGCGGCTTTGAGGAGCTGCAGAGCATGAAGGCTGAGAAGCG
.....................................................................................................((((((((.((((...............((((((......))))))((....))....))))))).)))))..............................................................................
................................................................................................97...........................................................................174..........................................................................
SizePerfect hitTotal NormPerfect NormDRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR189782SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		SRR037937(GSM510475)
293cand2. (cell line)		SRR037943(GSM510481)
293DcrTN. (cell line)		SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)		SRR037935(GSM510473)
293cand3. (cell line)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR553576(SRX182782)
source: Testis. (testes)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR037933(GSM510471)
293cand4_rep2. (cell line)		SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)		SRR207117(GSM721079)
Whole cell RNA. (cell line)		SRR189783DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR363675(GSM830252)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR037941(GSM510479)
293DroshaTN. (cell line)		SRR037940(GSM510478)
293cand5_rep2. (cell line)		SRR037934(GSM510472)
293cand4_rep3. (cell line)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189784SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		SRR029124(GSM416753)
HeLa. (hela)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR553575(SRX182781)
source: Kidney. (Kidney)		SRR189787SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR207118(GSM721080)
RRP40 knockdown. (RRP40 cell line)		SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR015447(SRR015447)
nuclear small RNAs. (breast)		SRR029127(GSM416756)
A549. (cell line)		SRR037932(GSM510470)
293cand4_rep1. (cell line)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		SRR363676(GSM830253)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR029126(GSM416755)
143B. (cell line)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		SRR029130(GSM416759)
DLD2. (cell line)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR553574(SRX182780)
source: Heart. (Heart)		SRR207119(GSM721081)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR039611(GSM531974)
Human Normal Liver Tissue Sample 1. (liver)		SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
......................................................................................................GGTCATGATGTCATGAATGTTTCTGAGC........................................................................................................................281158.00158.0077.0025.00-12.001.006.00--3.00--3.002.003.003.003.00-2.00---2.002.002.00-1.001.00-1.00-1.00--1.00-----1.00-----1.00--1.001.001.001.00--1.00-------
.....................................................................................................GGGTCATGATGTCATGAATGTTTCTGAGC........................................................................................................................29158.0058.0038.003.00-7.00---2.002.00-1.00-1.00-------1.00----------1.00--------------1.00------1.00--------
.................................CACGGAATTCTCCTTTTG.......................................................................................................................................................................................................1816.000.00--14.00----------------2.00------------------------------------------
.....................................................................................................GGGTCATGATGTCATGAATGTTTCTGAGCCTGA....................................................................................................................33113.0013.00----13.00---------------------------------------------------------
......................................................................................................................................................................................................................CTTTGAGGAGCTGCAGAGC.................1918.008.00------8.00-------------------------------------------------------
......................................................................................................GGTCATGATGTCATGAATGTTTCTGA..........................................................................................................................2615.005.00---3.00-2.00--------------------------------------------------------
.....................................................................................................GGGTCATGATGTCATGAAT..................................................................................................................................1915.005.00----------------3.00-------1.00-----------------1.00-------------------
.................................CACGGAATTCTCCTTGTG.......................................................................................................................................................................................................185.000.00--5.00-----------------------------------------------------------
.................................CACGGAATTCTCCTTTAG.......................................................................................................................................................................................................182.000.00--2.00-----------------------------------------------------------
.....................................................................................................GGGTCATGATGTCATGAATGTTTCTGCGC........................................................................................................................2912.001.00-2.00------------------------------------------------------------
................................................................................................................................................................................................................AGGCGGCTTTGAGGAGCTGCAGAGCACGA.............292.000.00---------2.00----------------------------------------------------
................................................................................CCTGGGTCTCTATAAACAG.......................................................................................................................................................191.000.00---------------------------1.00----------------------------------
......................................................................................................GGTCATGATGTCATGAATGTTTCTGAGT........................................................................................................................2811.001.001.00-------------------------------------------------------------
......................................................................................................GGTCATGATGTCATGAATGTTTCTGAGA........................................................................................................................2811.001.00--------------------1.00-----------------------------------------
.....................................................................................................GGGTCATGATGTCATGAATGTTTCTGAGCC.......................................................................................................................3011.001.00----------------------------------------------------1.00---------
...........................................................................................................................................................................................................ACGCTAGGCGGCTTTGAGGAGCCGC......................251.000.00---------1.00----------------------------------------------------
......................................................................................................GGTCATGATGTCATGAATGTTTCTGACC........................................................................................................................2811.005.00-------1.00------------------------------------------------------
..........................................................................................................................................................................................................................GAGGAGCTGCAGAGCATGAAGGCT........2411.001.00----------------------------------------------------------1.00---
......................................................................................................GGTCATGATGTCATGAATGTT...............................................................................................................................2111.001.00---1.00----------------------------------------------------------
......................................................................................................GGTCATGATGTCATGAATGTTTCTGATC........................................................................................................................2811.005.00----------------------------------------1.00---------------------
......................................................................................................GGTCATGATGTCATGAATGTTTCTGAGG........................................................................................................................2811.001.00-1.00------------------------------------------------------------
.................................CACGGAATTCTCCTTGTA.......................................................................................................................................................................................................181.000.00--1.00-----------------------------------------------------------
........................................................................................................................................................GCCTGTGGACACATTGAC................................................................................1811.001.00----------------------------------1.00---------------------------
......................................................................................................................................................................................................................CTTTGAGGAGCTGCAGAG..................1811.001.00------------------------------------1.00-------------------------
.................................CACGGAATTCTCCTTTT........................................................................................................................................................................................................171.000.00--1.00-----------------------------------------------------------
.................................CACGGAATTCTCCTTTTT.......................................................................................................................................................................................................181.000.00--1.00-----------------------------------------------------------
.................................CACGGAATTCTCCTTGTGT......................................................................................................................................................................................................191.000.00--1.00-----------------------------------------------------------
........................................................................................................................................................................................................................TTGAGGAGCTGCAGAGCATGAAGGCTGT......281.000.00----------1.00---------------------------------------------------
.................................CACGGAATTCTCCTTTTA.......................................................................................................................................................................................................181.000.00--1.00-----------------------------------------------------------
......................................................................................................GGTCATGATGTCATGAATGTTTCTTAGC........................................................................................................................281.000.00-------1.00------------------------------------------------------
...........................................................................................................................................................................................................................................GAAGGCTGAGAAGCGTA171.000.00-------------------------------------------------------1.00------
............................................................................................................................................................GTGGACACATTGACCCTGGC..........................................................................2011.001.00--------------------------------------------------------1.00-----
......................................................................................................GGTCATGATGTCATGAATGTTTCTGCGC........................................................................................................................2811.001.00-----------------------------------------------1.00--------------
..........................................................................................................ATGATGTCATGAATGTTTCTGAGC........................................................................................................................2411.001.00-1.00------------------------------------------------------------
.............................................................................................................................................GTCAGGGGCCAGCCTGTGGA.........................................................................................2011.001.00-------------------------------------------1.00------------------
.....................................................................................................GGGTCATGATGTCATGAATGTTTC.............................................................................................................................2411.001.00------------------1.00-------------------------------------------
......................................................................................................GGTCATGATGTCATGAATGTTTCTGGGC........................................................................................................................2811.001.001.00-------------------------------------------------------------
.....TCCTTTTTCTCCTTTCTGCC.................................................................................................................................................................................................................................201.000.00---------1.00----------------------------------------------------
......................................................................................................GGTCATGATGTCATGAATGTTTCTGAG.........................................................................................................................2711.001.00-------1.00------------------------------------------------------
..............................................................................................................................................................................................................................AGCTGCAGAGCATGAAGGCTGAGAAGCAGCA311.000.00--------------------------------------------1.00-----------------
........................................................................................................................................................................................................................TTGAGGAGCTGCAGAGCATGAAGG..........2411.001.00----------1.00---------------------------------------------------
.....................................................................................................GGGTCATGATGTCATGAATGTTTCTTATC........................................................................................................................291.000.00-----------------------------1.00--------------------------------
......................................................................................................GGTCATGATGTCATGAATGTTTCTG...........................................................................................................................2511.001.00------------------1.00-------------------------------------------
.................................CACGGAATTCTCCTTTGG.......................................................................................................................................................................................................181.000.00--1.00-----------------------------------------------------------
........................................................................................................................................................................................................................TTGAGGAGCTGCAGAGCATGAAGGCTGAGAAGCG3411.001.00---------------------------------------------------------1.00----
.....................................................................................................GGGTCATGATGTCATGAATGTT...............................................................................................................................2211.001.00------------------------1.00-------------------------------------
............................................................................................................GATGTCATGAATGTTTCTGAGC........................................................................................................................2211.001.00-----------------------------------------1.00--------------------
.........................................................................................................................................................................................................................TGAGGAGCTGCAGAGCATGAAGGC.........2411.001.00----------1.00---------------------------------------------------
.....................................................................................................GGGTCATGATGTCATGAATGTTTCTG...........................................................................................................................2611.001.00--------------------------------------1.00-----------------------
........................................................................................................................................................................................................................TTGAGGAGCTGCAGAG..................1640.250.25-----------------------------------------------------------0.25--
.....................................................................TTCAGGAGTTGCCTG......................................................................................................................................................................1570.140.14-------------------------------------------------------------0.14

Antisense strand
CTTGTTCCTTTTTCTCCTTTCCCTTGCGGATGTCACGGAATTCTCCTTGGGAGTGGCTTCAGTCCATTGTTCAGGAGTTGCCTGGGTCTCTATAAAGACATGGGTCATGATGTCATGAATGTTTCTGAGCCTGACACAATGGTCAGGGGCCAGCCTGTGGACACATTGACCCTGGCTCTGCTTCCCTGTCTGTGATGCAGTGCACGCTAGGCGGCTTTGAGGAGCTGCAGAGCATGAAGGCTGAGAAGCG
.....................................................................................................((((((((.((((...............((((((......))))))((....))....))))))).)))))..............................................................................
................................................................................................97...........................................................................174..........................................................................
SizePerfect hitTotal NormPerfect NormDRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR189782SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		SRR037937(GSM510475)
293cand2. (cell line)		SRR037943(GSM510481)
293DcrTN. (cell line)		SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)		SRR037935(GSM510473)
293cand3. (cell line)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR553576(SRX182782)
source: Testis. (testes)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR037933(GSM510471)
293cand4_rep2. (cell line)		SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)		SRR207117(GSM721079)
Whole cell RNA. (cell line)		SRR189783DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR363675(GSM830252)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR037941(GSM510479)
293DroshaTN. (cell line)		SRR037940(GSM510478)
293cand5_rep2. (cell line)		SRR037934(GSM510472)
293cand4_rep3. (cell line)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189784SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		SRR029124(GSM416753)
HeLa. (hela)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR553575(SRX182781)
source: Kidney. (Kidney)		SRR189787SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR207118(GSM721080)
RRP40 knockdown. (RRP40 cell line)		SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR015447(SRR015447)
nuclear small RNAs. (breast)		SRR029127(GSM416756)
A549. (cell line)		SRR037932(GSM510470)
293cand4_rep1. (cell line)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		SRR363676(GSM830253)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR029126(GSM416755)
143B. (cell line)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		SRR029130(GSM416759)
DLD2. (cell line)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR553574(SRX182780)
source: Heart. (Heart)		SRR207119(GSM721081)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR039611(GSM531974)
Human Normal Liver Tissue Sample 1. (liver)		SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
................CTTTCCCTTGCGGATATGA....................................................................................................................................................................................................................... 193.000.00----3.00---------------------------------------------------------
...............................................................................GCCTGGGTCTCTATAAACC........................................................................................................................................................ 191.000.00--------------------------------1.00-----------------------------
............................................................................................................................................................................................TCTGTGATGCAGTGCACC............................................ 181.000.00-------------------------------------1.00------------------------
...........TTCTCCTTTCCCTTGCGGT............................................................................................................................................................................................................................ 191.000.00-----------------------------------1.00--------------------------
...AAAGGAGAAAAAGGAAC...................................................................................................................................................................................................................................... 1760.170.17------------------------------------------------------------0.17-