ID: uc001dxr.2_intron_1_0_chr1_110028745_f
GENE: (2)
chr1:110028695-110029177+


(1)
B-CELL
(2)
BRAIN
(2)
BREAST
(7)
CELL-LINE
(2)
CERVIX
(1)
HEART
(2)
HELA
(1)
OTHER
(2)
SKIN

Sense strand
GAGTAGCAAAAACACGAAGAAGTTGGATGCCATGACCCTCATTAAAGAAGGTGGGAGTCGACACACATTAGGGCTGGGACCCAGGGCAGACAGGACCACGCTCCACTTTTCCACCACACTACAGAAGGAGGTGGCTGCTTGAAGCAGCTGTCTGGGGACCCTCATTTTGATAGGTCCGAGTCGGCCGGTTGTTCTGGCTCCTGTGACCTGTCGTTGGAGATCATAATCATAGGTGATTGCCCACTCACCTGAAAGCGTATACCCTTTGGGACTGCTTAGATCGAACTCTGGAAGCTGGAAGCATTCAGCATGGAGCTTGTTATATCAGCGGGGAGGTGAAGTGCCTTCTGAGTGTGGGGTGGGAGTGCTCTCCGATCTTCCAGAGAAACCCTGGGATCTTCAGCCCCAGTGACATGGGCTTCTGTCATTGCAGACATGTCCATCTTCGGGCACTGCCCTGCCCATGATGACTTCTACTTGGTT
....................................................................................................................................((((((.....))))))...((((....(((....(((((((((..((..((((((.....)))))).))..)))))))))...)))....((((((....)))))))))).((((((...........(((...))).(((((((...(((.(((((...((((((....)))))).))))).)))...))..)))))..))))))................................................................................................................................................
..................................................................................................................................131.............................................................................................................................................................................................................339..............................................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)
SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
SRR189784SRR207110(GSM721072)
Nuclear RNA. (cell line)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR040042(GSM532927)
G428N. (cervix)
DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR040037(GSM532922)
G243T. (cervix)
SRR189787SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)
GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)
SRR015364(GSM380329)
Plasma B cells (PC44). (B cell)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)
GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)
TAX577745(Rovira)
total RNA. (breast)
DRR001482(DRX001036)
"Hela long total cell fraction, control". (hela)
SRR191474(GSM715584)
16genomic small RNA (size selected RNA from t. (breast)
SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)
SRR039637(GSM518474)
THP1_total_sRNAs. (cell line)
.......................................................................................................................................TGCTTGAAGCAGCTGTGG..........................................................................................................................................................................................................................................................................................................................................1868.000.0055.0013.00--------------------
.......................................................................................................................................TGCTTGAAGCAGCTGTGGA.........................................................................................................................................................................................................................................................................................................................................1945.000.0038.007.00--------------------
.......................................................................................................................................TGCTTGAAGCAGCTGTGGAC........................................................................................................................................................................................................................................................................................................................................2014.000.009.005.00--------------------
........................................................................................................................................GCTTGAAGCAGCTGTGGAC........................................................................................................................................................................................................................................................................................................................................1914.000.0011.003.00--------------------
.......................................................................................................................................TGCTTGAAGCAGCTGTGGAT........................................................................................................................................................................................................................................................................................................................................206.000.005.001.00--------------------
........................................................................................................................................GCTTGAAGCAGCTGTGGA.........................................................................................................................................................................................................................................................................................................................................185.000.002.003.00--------------------
........................................................................................................................................GCTTGAAGCAGCTGTGG..........................................................................................................................................................................................................................................................................................................................................173.000.003.00---------------------
.......................................................................................................................................TGCTTGAAGCAGCTGTGGT.........................................................................................................................................................................................................................................................................................................................................192.000.001.001.00--------------------
.......................................................................................................................................TGCTTGAAGCAGCTGTGGC.........................................................................................................................................................................................................................................................................................................................................192.000.002.00---------------------
.............................................................................................................................................................................................................................................................................................................................TGTTATATCAGCGGGGAG....................................................................................................................................................1812.002.00---2.00------------------
.......................................................................................................................................TGCTTGAAGCAGCTGTGGAA........................................................................................................................................................................................................................................................................................................................................201.000.001.00---------------------
......................................................................................................................................CTGCTTGAAGCAGCTGTGG..........................................................................................................................................................................................................................................................................................................................................191.000.001.00---------------------
.....................................................................................................................................................................................................................................................................................................................................CAGCGGGGAGGTGAAGCAGC..........................................................................................................................................201.000.00--------1.00-------------
................................................................................................................................................................................................................................................................................................................................................................TGTGGGGTGGGAGTGTGTC................................................................................................................191.000.00----1.00-----------------
.......................................................................................................................................TGCTTGAAGCAGCTGTAGA.........................................................................................................................................................................................................................................................................................................................................191.000.001.00---------------------
........................................................................................................................................GCTTGAAGCAGCTGTGGAT........................................................................................................................................................................................................................................................................................................................................191.000.001.00---------------------
.......................................................................................................................................TGCTTGAAGCAGCTGTGGTC........................................................................................................................................................................................................................................................................................................................................201.000.001.00---------------------
............................................................................................................................................................................................TTGTTCTGGCTCCTGTGACCTGTCGTTGG..........................................................................................................................................................................................................................................................................2911.001.00----1.00-----------------
.........................................................................................................................................................................................................................................................................................CGAACTCTGGAAGCTGGA........................................................................................................................................................................................1811.001.00-----------1.00----------
.......................................................................................................................................TGCTTGAAGCAGCTGTGTTA........................................................................................................................................................................................................................................................................................................................................201.000.001.00---------------------
........................................................................................................................................................................................................................................................................................TCGAACTCTGGAAGCTGGAAGCA....................................................................................................................................................................................2311.001.00-------1.00--------------
..................................................................................................................................................................................................................................................................................................................................................AAGTGCCTTCTGAGTGTGGGGTGGG........................................................................................................................2511.001.00-------------1.00--------
.............ACGAAGAAGTTGGATGCCATGACCCTCATC........................................................................................................................................................................................................................................................................................................................................................................................................................................................301.000.00---------1.00------------
.......................................................................................................................................TGCTTGAAGCAGCTGTGAA.........................................................................................................................................................................................................................................................................................................................................191.000.001.00---------------------
..............................................................................................................................GGAGGTGGCTGCTTGTCA...................................................................................................................................................................................................................................................................................................................................................181.000.00---------------1.00------
.......................................................................................................................................TGCTTGAAGCAGCTGTGGGA........................................................................................................................................................................................................................................................................................................................................201.000.00-1.00--------------------
.......................................................................................................................................TGCTTGAAGCAGCTGTAG..........................................................................................................................................................................................................................................................................................................................................181.000.00-1.00--------------------
.......................................................................................................................................TGCTTGAAGCAGCTGTCGA.........................................................................................................................................................................................................................................................................................................................................191.000.001.00---------------------
.......................................................................................................................................TGCTTGAAGCAGCTGTGGCA........................................................................................................................................................................................................................................................................................................................................201.000.001.00---------------------
.......................................................................................................................................TGCTTGAAGCAGCTGTGC..........................................................................................................................................................................................................................................................................................................................................181.000.001.00---------------------
........AAAACACGAAGAAGTGTGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................191.000.00-----1.00----------------
.......................................................................................................................................TGCTTGAAGCAGCTGTGGCC........................................................................................................................................................................................................................................................................................................................................201.000.001.00---------------------
............CACGAAGAAGTTGGATGCCA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001.00----------------1.00-----
............CACGAAGAAGTTGGATGCCATGA................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001.00------------1.00---------
...................AAGTTGGATGCCATGA................................................................................................................................................................................................................................................................................................................................................................................................................................................................1620.500.50------------------0.50---
.......................................................................................................................................TGCTTGAAGCAGCTGGGGT.........................................................................................................................................................................................................................................................................................................................................1990.220.110.22---------------------
.......................................................................................................................................TGCTTGAAGCAGCTGGACA.........................................................................................................................................................................................................................................................................................................................................1990.220.110.110.11--------------------
.......................................................................................................................................TGCTTGAAGCAGCTGCGG..........................................................................................................................................................................................................................................................................................................................................1890.220.110.22---------------------
.......................................................................................................................................TGCTTGAAGCAGCTGGACT.........................................................................................................................................................................................................................................................................................................................................1990.220.110.110.11--------------------
.......................................................................................................................................TGCTTGAAGCAGCTGGGCA.........................................................................................................................................................................................................................................................................................................................................1990.110.110.11---------------------
.......................................................................................................................................TGCTTGAAGCAGCTGGAGT.........................................................................................................................................................................................................................................................................................................................................1990.110.110.11---------------------
.......................................................................................................................................TGCTTGAAGCAGCTGGA...........................................................................................................................................................................................................................................................................................................................................1790.110.110.11---------------------
.......................................................................................................................................TGCTTGAAGCAGCTGGAT..........................................................................................................................................................................................................................................................................................................................................1890.110.110.11---------------------
.......................................................................................................................................TGCTTGAAGCAGCTGGGGA.........................................................................................................................................................................................................................................................................................................................................1990.110.11-0.11--------------------
.......................................................................................................................................TGCTTGAAGCAGCTG.............................................................................................................................................................................................................................................................................................................................................1590.110.11-0.11--------------------

Antisense strand
GAGTAGCAAAAACACGAAGAAGTTGGATGCCATGACCCTCATTAAAGAAGGTGGGAGTCGACACACATTAGGGCTGGGACCCAGGGCAGACAGGACCACGCTCCACTTTTCCACCACACTACAGAAGGAGGTGGCTGCTTGAAGCAGCTGTCTGGGGACCCTCATTTTGATAGGTCCGAGTCGGCCGGTTGTTCTGGCTCCTGTGACCTGTCGTTGGAGATCATAATCATAGGTGATTGCCCACTCACCTGAAAGCGTATACCCTTTGGGACTGCTTAGATCGAACTCTGGAAGCTGGAAGCATTCAGCATGGAGCTTGTTATATCAGCGGGGAGGTGAAGTGCCTTCTGAGTGTGGGGTGGGAGTGCTCTCCGATCTTCCAGAGAAACCCTGGGATCTTCAGCCCCAGTGACATGGGCTTCTGTCATTGCAGACATGTCCATCTTCGGGCACTGCCCTGCCCATGATGACTTCTACTTGGTT
....................................................................................................................................((((((.....))))))...((((....(((....(((((((((..((..((((((.....)))))).))..)))))))))...)))....((((((....)))))))))).((((((...........(((...))).(((((((...(((.(((((...((((((....)))))).))))).)))...))..)))))..))))))................................................................................................................................................
..................................................................................................................................131.............................................................................................................................................................................................................339..............................................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)
SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
SRR189784SRR207110(GSM721072)
Nuclear RNA. (cell line)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR040042(GSM532927)
G428N. (cervix)
DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR040037(GSM532922)
G243T. (cervix)
SRR189787SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)
GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)
SRR015364(GSM380329)
Plasma B cells (PC44). (B cell)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)
GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)
TAX577745(Rovira)
total RNA. (breast)
DRR001482(DRX001036)
"Hela long total cell fraction, control". (hela)
SRR191474(GSM715584)
16genomic small RNA (size selected RNA from t. (breast)
SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)
SRR039637(GSM518474)
THP1_total_sRNAs. (cell line)
..........................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGCAGACATGTCCAAAG...................................... 193.000.00--3.00-------------------
..............................................................................................................CCACCACACTACAGAATT................................................................................................................................................................................................................................................................................................................................................................... 182.000.00------1.00----------1.00----
...............................................................................................................................................................................................................................................................................................................................................................................CTCTCCGATCTTCCAGTTG................................................................................................. 191.000.00--1.00-------------------
............................................................................................................................................................................................................................................................................................................................................................................................................TCTTCAGCCCCAGTGATA..................................................................... 181.000.00----------1.00-----------
..............................................................................................................................................................................................GTTCTGGCTCCTGTGTCTG.................................................................................................................................................................................................................................................................................. 191.000.00--------------1.00-------
.....................................................................................................................................................................................................................................................................................................................TATAACAAGCTCCAT............................................................................................................................................................... 1540.250.25--------------------0.25-
.....................................................................................................................................................................................................................................................................................................................ATGGAGCTTGTTATACAC............................................................................................................................................................ 180.250.00-------------------0.25--
.....................................................................................................................................................................................................................................................................................................................ATGGAGCTTGTTATACTA............................................................................................................................................................ 180.250.00---------------------0.25