ID: uc001dxn.2_intron_1_0_chr1_109952637_r.3p
GENE: (7)
chr1:109952587-109952836-


(1)
AGO1.ip 		(2)
AGO2.ip 		(3)
B-CELL 		(4)
BREAST 		(16)
CELL-LINE 		(2)
FIBROBLAST 		(1)
HEART 		(2)
HELA 		(2)
LIVER 		(1)
OTHER 		(1)
RRP40.ip 		(10)
SKIN 		(1)
TESTES 		(1)
UTERUS 		(1)
XRN.ip

Sense strand
GGGGTTTTTTTTCCTGAAAAAATGTATTCTACTTATTTGCCATTTACTTGAGTTCTGGAGATACTTGTAATGCACCATACTAAGTAAGATGTTTGACATACTTGCTAAATACTTTTTTCAGTGAGATAAAGGGAAAATCTTTGAAGGAAGGACGGATTGTGCATAATTAATAGGCATCTTCTTGCCTTCTTTGTTTCAAGTCTATGACTTTGAAAGAAGCCATCAAGTCTTCACTCATCATCCTCAAACA
......................................................................................................(((..(((.(((((((((..(((((.........)))))))))))))).....)))..))).......................................................................................
....................................................................................................101..............................................................166..................................................................................
SizePerfect hitTotal NormPerfect NormSRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR189782SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)		SRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR033714(GSM497059)
Burkitt Lymphoma (BL134). (B cell)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR037936(GSM510474)
293cand1. (cell line)		SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR191568(GSM715678)
51genomic small RNA (size selected RNA from t. (breast)		TAX577746(Rovira)
total RNA. (breast)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR033724(GSM497069)
L428 cell line (L428). (B cell)		GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)		SRR207118(GSM721080)
RRP40 knockdown. (RRP40 cell line)		SRR343333(GSM796036)
KSHV (HHV8). (cell line)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577590(Rovira)
total RNA. (breast)		SRR363676(GSM830253)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR553576(SRX182782)
source: Testis. (testes)		SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		SRR038863(GSM458546)
MM603. (cell line)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR363674(GSM830251)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)		SRR330858(SRX091696)
tissue: skin psoriatic involveddisease state:. (skin)
............................................................................................................................................TTGAAGGAAGGACGGATTGTGC........................................................................................22138.0038.0022.00-5.00--3.00-------1.00------1.00-----------1.00--1.001.001.001.00-1.00--
.................................................................................................................................AGGGAAAATCTTTGAAGGAAGGACGGATTGTGCATAATTAATAGGCATCTTCTTGCCTTCTTTGTT.......................................................66113.0013.00-13.00-----------------------------------------
.....................................................................................................................................AAAATCTTTGAAGGAAGGACGGA..............................................................................................2314.004.00--4.00----------------------------------------
.............................................................................................................................................TGAAGGAAGGACGGATTGTGC........................................................................................2113.003.00----3.00--------------------------------------
..............................................CTTGAGTTCTGGAGATAC..........................................................................................................................................................................................1812.002.00------2.00------------------------------------
...........................................................................................................................................................................................................................CCATCAAGTCTTCACTCATCATCCTCA....2712.002.00---2.00---------------------------------------
...............................................................................................................................................AAGGAAGGACGGATTGTG.........................................................................................1811.001.00---------------------------1.00---------------
.......................................................................................................................................................................................................GTCTATGACTTTGAAAGAAGC..............................2111.001.00---------------------1.00---------------------
...............................................................................................................................................AAGGAAGGACGGATTGTGT........................................................................................1911.001.00-----------------------------------------1.00-
........................................................................................................................................................CGGATTGTGCATAATTAATAGGCAT.........................................................................2511.001.00----------------------------1.00--------------
...................................................................................................................................GGAAAATCTTTGAAGGAAGGACG................................................................................................2311.001.00---------------------------------------1.00---
........................................................................................................................................ATCTTTGAAGGAAGGACGGATTGTGC........................................................................................2611.001.00---------------------------------1.00---------
......................................................................................................................................................GACGGATTGTGCATAATTAATAG.............................................................................2311.001.00--1.00----------------------------------------
.................................................................................................................................AGGGAAAATCTTTGAAGGAAGGACGGATT............................................................................................2911.001.00---------------1.00---------------------------
............................................................................................................................................................................................................................CATCAAGTCTTCACTCATCATCC.......2311.001.00----------1.00--------------------------------
............................................................................................................................................................................................................................CATCAAGTCTTCACTCATCATCCT......2411.001.00------------------------------1.00------------
......................................................................................................................................AAATCTTTGAAGGAAGGACGGATTGTGCAT......................................................................................3011.001.00-------------------1.00-----------------------
.............................................................................................................................................TGAAGGAAGGACGGATTGGGC........................................................................................211.000.00----------------------1.00--------------------
.............................................................................................................................................TGAAGGAAGGACGGATTGTGCATAA....................................................................................2511.001.00-------1.00-----------------------------------
...........................................................................................................................................TTTGAAGGAAGGACGGATTGTGC........................................................................................2311.001.00----------------------------------1.00--------
.........................................................................................................TAAATACTTTTTTCAAGT...............................................................................................................................181.000.00---------1.00---------------------------------
.............................................................................................................................................TGAAGGAAGGACGGATTGTGCAT......................................................................................2311.001.00--------1.00----------------------------------
...........................................................................................................................................................................................................................CCATCAAGTCTTCACTCATCATCC.......2411.001.00---1.00---------------------------------------
............................................................................................................................................TTGAAGGAAGGACGGATTGTGCATAA....................................................................................2611.001.00--1.00----------------------------------------
....................................................................................................................................................................................................................................CTTCACTCATCATCCTCAAAC.2111.001.00----------------1.00--------------------------
...................................................................................................................................................................................................................................TCTTCACTCATCATCCTCAAACAAATG271.000.00---1.00---------------------------------------
.............................................................................................................................................TGAAGGAAGGACGGATTGGGCA.......................................................................................221.000.00-----------------------------1.00-------------
.............................................................................................................................................TGAAGGAAGGACGGATTGTGCA.......................................................................................2211.001.00--------------1.00----------------------------
...........................................................................................................................................................................................................ATGACTTTGAAAGAAGCCATCAAGTCT....................2711.001.00-----------1.00-------------------------------
...............................................................................................................................................AAGGAAGGACGGATTGTGCATA.....................................................................................2211.001.00------------------------1.00------------------
.......................................................................................................................................................ACGGATTGTGCATAATTAA................................................................................1911.001.00-----------------------1.00-------------------
.......................................................................................................................................AATCTTTGAAGGAAGGACGGATTGTGC........................................................................................2711.001.00--------------------------1.00----------------
..........................................................................................................................................................................................................TATGACTTTGAAAGAAGC..............................1811.001.00-------------------------1.00-----------------
.....................................................................................................................................................GGACGGATTGTGCATAATTAATA..............................................................................2311.001.00--------1.00----------------------------------
...........................................................................................................................................TTTGAAGGAAGGACGGATTGTG.........................................................................................2211.001.00--1.00----------------------------------------
......................................................................................................................................................................................................AGTCTATGACTTTGAAAGAAGC..............................2211.001.00-------1.00-----------------------------------
..............................................................................................................................................GAAGGAAGGACGGATTGTGCATA.....................................................................................2311.001.00------------1.00------------------------------
..................................................................................................................................................................................................................TGAAAGAAGCCATCAAG.......................1720.500.50------------------------------------------0.50

Antisense strand
GGGGTTTTTTTTCCTGAAAAAATGTATTCTACTTATTTGCCATTTACTTGAGTTCTGGAGATACTTGTAATGCACCATACTAAGTAAGATGTTTGACATACTTGCTAAATACTTTTTTCAGTGAGATAAAGGGAAAATCTTTGAAGGAAGGACGGATTGTGCATAATTAATAGGCATCTTCTTGCCTTCTTTGTTTCAAGTCTATGACTTTGAAAGAAGCCATCAAGTCTTCACTCATCATCCTCAAACA
......................................................................................................(((..(((.(((((((((..(((((.........)))))))))))))).....)))..))).......................................................................................
....................................................................................................101..............................................................166..................................................................................
SizePerfect hitTotal NormPerfect NormSRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR189782SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)		SRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR033714(GSM497059)
Burkitt Lymphoma (BL134). (B cell)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR037936(GSM510474)
293cand1. (cell line)		SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR191568(GSM715678)
51genomic small RNA (size selected RNA from t. (breast)		TAX577746(Rovira)
total RNA. (breast)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR033724(GSM497069)
L428 cell line (L428). (B cell)		GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)		SRR207118(GSM721080)
RRP40 knockdown. (RRP40 cell line)		SRR343333(GSM796036)
KSHV (HHV8). (cell line)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577590(Rovira)
total RNA. (breast)		SRR363676(GSM830253)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR553576(SRX182782)
source: Testis. (testes)		SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		SRR038863(GSM458546)
MM603. (cell line)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR363674(GSM830251)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)		SRR330858(SRX091696)
tissue: skin psoriatic involveddisease state:. (skin)
...............................................................................................................................AAAGGGAAAATCTTTGTGGT....................................................................................................... 201.000.00------------------1.00------------------------
...................................................................................................................................................................................................................................TCTTCACTCATCATCCTCAATT. 221.000.00-----------------1.00-------------------------
........................................................................................................................GTGAGATAAAGGGAAACATG.............................................................................................................. 201.000.00---1.00---------------------------------------
....................................................................................................................................................................................................................................CTTCACTCATCATCCTCATAGT 221.000.00-------------------------------1.00-----------