ID: uc001dxa.16
GENE: CELSR2(17)
chr1:109811003-109811252+


(1)
AGO1.ip 		(1)
AGO1.ip OTHER.mut 		(2)
AGO2.ip 		(1)
B-CELL 		(2)
BRAIN 		(9)
BREAST 		(19)
CELL-LINE 		(1)
CERVIX 		(1)
FIBROBLAST 		(1)
HEART 		(2)
HELA 		(2)
OTHER 		(1)
RRP40.ip 		(13)
SKIN 		(1)
UTERUS 		(1)
XRN.ip

Sense strand
AGGAGGAGGGCTTAGGGGCAGAGCATCCAGTGACCTGAGTGGGCAGTGCGGTCCAGGAGCATTTCAGGGGAGGCAACAGTGAGCACAGAGGGAGGGGCCTGGTGGGGAGCAGGGACTGGCCCGGGCACAGGCCGGGGCTCCATGGTGGGGATGTCAGGTGTGGGTTGTGAGCACACCCACCGTGACCTTGCCCACCCCAGAATCTGCTGCGGGTGGGCAGCGCCCTCCTGGACACAGCCAACAAGCGGCA
...............................................................................................................................................((((((((.((((((((.((..((....))..)))))).)))).)).))))))......................................................
........................................................................................................................................137............................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		SRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR029131(GSM416760)
MCF7. (cell line)		SRR189786SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)		SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR189782SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR191590(GSM715700)
48genomic small RNA (size selected RNA from t. (breast)		SRR189787DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		TAX577740(Rovira)
total RNA. (breast)		SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)		DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR037936(GSM510474)
293cand1. (cell line)		SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)		SRR191478(GSM715588)
30genomic small RNA (size selected RNA from t. (breast)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		SRR191628(GSM715738)
52genomic small RNA (size selected RNA from t. (breast)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR040028(GSM532913)
G026N. (cervix)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR207118(GSM721080)
RRP40 knockdown. (RRP40 cell line)		SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR191626(GSM715736)
36genomic small RNA (size selected RNA from t. (breast)		SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)		SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR191551(GSM715661)
32genomic small RNA (size selected RNA from t. (breast)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191547(GSM715657)
155genomic small RNA (size selected RNA from . (breast)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)		SRR191445(GSM715555)
110genomic small RNA (size selected RNA from . (breast)		SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
.............................................................................................................................................ATGGTGGGGATGTCAGGTGTGG.......................................................................................22174.0074.0034.0015.003.00-4.003.005.001.001.00-1.001.00----------1.001.001.00-----------1.00--------1.00-1.00-------
............................................................................................................................................CATGGTGGGGATGTCAGGTGTGG.......................................................................................23132.0032.004.001.002.00-3.002.00---3.003.002.003.00--3.00----1.002.00-----1.00---------1.00---------------1.00-
.............................................................................................................................................ATGGTGGGGATGTCAGGTGTGA.......................................................................................2210.000.00-3.001.003.00---1.00--------1.00-------1.00------------------------------
..............................................................................................................................................TGGTGGGGATGTCAGGTGTGG.......................................................................................2119.009.005.00-1.00-2.00------1.00-------------------------------------------
.............................................................................................................................................ATGGTGGGGATGTCAGGTGGGG.......................................................................................227.000.005.001.001.00----------------------------------------------------
............................................................................................................................................CATGGTGGGGATGTCAGGTGTGGG......................................................................................2417.007.007.00------------------------------------------------------
.............................................................................................................................................ATGGTGGGGATGTCAGGTGTGGA......................................................................................2316.0074.003.00---2.001.00-------------------------------------------------
..............................................................................................................................................TGGTGGGGATGTCAGGTGTGGG......................................................................................2215.005.00----1.00--------------------1.00--1.00-1.00-1.00----------------------
............................................................................................................................................CATGGTGGGGATGTCAGGTGTGGA......................................................................................2414.0032.00---2.00--------------1.00----------1.00-------------------------
..............................................................................................................................................TGGTGGGGATGTCAGGTGTGGGTAAT..................................................................................2613.002.00-------------3.00-----------------------------------------
..................................................................................................................................................................................ACCGTGACCTTGCCCACCCCAG..................................................2213.003.00--------------3.00----------------------------------------
...............................................................................................................................................GGTGGGGATGTCAGGTGTGG.......................................................................................2013.003.00---3.00---------------------------------------------------
............................................................................................................................................CATGGTGGGGATGTCAGGTGTGGT......................................................................................2413.0032.002.00-------------------------------------------------1.00----
..............................................................................................................................................TGGTGGGGATGTCAGGTAAAA.......................................................................................212.000.00---2.00---------------------------------------------------
.............................................................................................................................................ATGGTGGGGATGTCAGGTGTGTTAG....................................................................................252.000.00---2.00---------------------------------------------------
.............................................................................................................................................ATGGTGGGGATGTCAGGTGTGGAA.....................................................................................2412.0074.00--2.00----------------------------------------------------
.............................................................................................................................................ATGGTGGGGATGTCAGGTGTGGG......................................................................................2312.002.00-------------------1.00----------------------------------1.00
..............................................................................................................................................TGGTGGGGATGTCAGGTGTGGGT.....................................................................................2312.002.00----------------1.00---------------------1.00----------------
.............................................................................................................................................ATGGTGGGGATGTCAGGTGTTG.......................................................................................2211.001.00-1.00-----------------------------------------------------
.............................................................................................................................................ATGGTGGGGATGTCAGGTGTGT.......................................................................................221.000.00---------------------------------------------------1.00---
..............................................................................................................................................TGGTGGGGATGTCAGGTGGGG.......................................................................................211.000.00-----1.00-------------------------------------------------
......................................GTGGGCAGTGCGGTCGATA.................................................................................................................................................................................................191.000.00---------------------------------------1.00---------------
....................................................................................................................................................GGATGTCAGGTGTGGGTTG...................................................................................1911.001.00---------1.00---------------------------------------------
............................................................................................................................................CATGGTGGGGATGTCAGGAT..........................................................................................201.000.00-------1.00-----------------------------------------------
..............................................................................................................................................TGGTGGGGATGTCAGGTGTGGGCT....................................................................................2411.005.00------------------1.00------------------------------------
......................................GTGGGCAGTGCGGTCAGT..................................................................................................................................................................................................181.000.00--------------------1.00----------------------------------
..............................................................................................................................................TGGTGGGGATGTCAGGTGTGA.......................................................................................211.000.00--1.00----------------------------------------------------
............................................................................................................................................CATGGTGGGGATGTCAGGTGCGG.......................................................................................231.000.00--------1.00----------------------------------------------
.................................................................................................................................................................................CACCGTGACCTTGCCCACCCCA...................................................2211.001.00-------1.00-----------------------------------------------
............................................................................................................................................CATGGTGGGGATGTCAG.............................................................................................1721.001.00-------------------------------------------1.00-----------
..............................................................................................................................................TGGTGGGGATGTCAGGTATT........................................................................................201.000.00-----------------1.00-------------------------------------
............................................................................................................................................CATGGTGGGGATGTCAGGTGT.........................................................................................2111.001.00-----------------------------------1.00-------------------
.......................CATCCAGTGACCTGAGTGGGCAGTGCGG.......................................................................................................................................................................................................2811.001.00------------------------------------------------1.00------
.............................................................................................................................................ATGGTGGGGATGTCAGGTGTGGTTTT...................................................................................2611.0074.00-----------------------1.00-------------------------------
.............................................................................................................................................ATGGTGGGGATGTCAGGTGCGG.......................................................................................221.000.00--------1.00----------------------------------------------
....................................................................................................................................................................................................................................TGGACACAGCCAACAAGCGGCA2211.001.00-----------------1.00-------------------------------------
.............................................................................................................................................................................CACCCACCGTGACCTTGCCCATA......................................................231.000.00----------------------------------------------------1.00--
............................................................................................................................................CATGGTGGGGATGTCAGGTGTG........................................................................................2211.001.00-------------------------1.00-----------------------------
............................................................................................................................................CATGGTGGGGATGTCAGGTGTGT.......................................................................................2311.001.00-------------------1.00-----------------------------------
...................................................................................................................................................................................................................................CTGGACACAGCCAACAAGCAGCA231.000.00----------------------------------1.00--------------------
............................................................................................................................................CATGGTGGGGATGTCAGGTGTGAA......................................................................................2411.001.00----------------------------------------------1.00--------
.............................................................................................................................................ATGGTGGGGATGTCAGGTGT.........................................................................................2011.001.00-------------------------------------------------1.00-----
............................................................................................................................................CATGGTGGGGATGTCAGGTGCGGG......................................................................................241.000.00--------1.00----------------------------------------------
.................................................................................................................................................................................CACCGTGACCTTGCCCACCCCAG..................................................2311.001.00-----------------------------------------1.00-------------
............................................................................................................................................CATGGTGGGGATGTCAGGTGTAGT......................................................................................2411.001.00----------------------1.00--------------------------------
............................................................................................................................................CATGGTGGGGATGTCAGGTGTGA.......................................................................................2311.001.00-----1.00-------------------------------------------------
........................................................................................................................................................................................................AATCTGCTGCGGGTGG..................................1611.001.00----------------------------------------1.00--------------
.............................................................................................................................................ATGGTGGGGATGTCAGGTGTGGCAAT...................................................................................2611.0074.00--1.00----------------------------------------------------
............................................................................................................................................CATGGTGGGGATGTCAGGTGTGAT......................................................................................2411.001.00-------------------------------1.00-----------------------
............................................................................................................................................CATGGTGGGGATGTCAGGTGTGGTG.....................................................................................2511.0032.00--------1.00----------------------------------------------
.................................................................................................CCTGGTGGGGAGCAGGGACTGGC..................................................................................................................................2311.001.00---------------------------------1.00---------------------
............................................................................................................................................CATGGTGGGGATGTCAGGTATGG.......................................................................................231.000.00--------------------------------------------1.00----------
.............................................................................................................................................ATGGTGGGGATGTCAGGTGTGTCG.....................................................................................241.000.00--------------------------1.00----------------------------
.............................................................................................................................................ATGGTGGGGATGTCAGGTGTGGAT.....................................................................................2411.0074.00------------1.00------------------------------------------
............................................................................................................................................CATGGTGGGGATGTCAGTTTT.........................................................................................2120.501.00-------0.50-----------------------------------------------
.............................................................................................................................................ATGGTGGGGATGTCAGG............................................................................................1720.500.50--------------------------0.50----------------------------

Antisense strand
AGGAGGAGGGCTTAGGGGCAGAGCATCCAGTGACCTGAGTGGGCAGTGCGGTCCAGGAGCATTTCAGGGGAGGCAACAGTGAGCACAGAGGGAGGGGCCTGGTGGGGAGCAGGGACTGGCCCGGGCACAGGCCGGGGCTCCATGGTGGGGATGTCAGGTGTGGGTTGTGAGCACACCCACCGTGACCTTGCCCACCCCAGAATCTGCTGCGGGTGGGCAGCGCCCTCCTGGACACAGCCAACAAGCGGCA
...............................................................................................................................................((((((((.((((((((.((..((....))..)))))).)))).)).))))))......................................................
........................................................................................................................................137............................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		SRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR029131(GSM416760)
MCF7. (cell line)		SRR189786SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)		SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR189782SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR191590(GSM715700)
48genomic small RNA (size selected RNA from t. (breast)		SRR189787DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		TAX577740(Rovira)
total RNA. (breast)		SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)		DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR037936(GSM510474)
293cand1. (cell line)		SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)		SRR191478(GSM715588)
30genomic small RNA (size selected RNA from t. (breast)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		SRR191628(GSM715738)
52genomic small RNA (size selected RNA from t. (breast)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR040028(GSM532913)
G026N. (cervix)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR207118(GSM721080)
RRP40 knockdown. (RRP40 cell line)		SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR191626(GSM715736)
36genomic small RNA (size selected RNA from t. (breast)		SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)		SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR191551(GSM715661)
32genomic small RNA (size selected RNA from t. (breast)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191547(GSM715657)
155genomic small RNA (size selected RNA from . (breast)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)		SRR191445(GSM715555)
110genomic small RNA (size selected RNA from . (breast)		SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
........................................................................................................................................................................................................AATCTGCTGCGGGTGGCC................................ 181.000.00------1.00------------------------------------------------
...............................................................................................GGCCTGGTGGGGAGCACCA........................................................................................................................................ 191.000.00-------1.00-----------------------------------------------
..............................................................................GTGAGCACAGAGGGAGCTC......................................................................................................................................................... 191.000.00------------------------------------------1.00------------