ID: uc001dwe.1_intron_10_0_chr1_109493071_r.5p
GENE: (1)
chr1:109505819-109506068-


(1)
AGO2.ip 		(12)
B-CELL 		(4)
BRAIN 		(15)
BREAST 		(31)
CELL-LINE 		(4)
CERVIX 		(7)
HEART 		(6)
HELA 		(1)
KIDNEY 		(3)
LIVER 		(2)
OTHER 		(1)
RRP40.ip 		(25)
SKIN 		(1)
XRN.ip

Sense strand
CCCTGGGCGGCGGCAAGCTGTGCGACCTCTTCTGCGGCCGGCCTGGGCAGGTGTCTTCCTCGAGAGGCAGGCAGGGGATCCCGGACGTGAGTCCGTGCAGTTGGGTGTGTTGTGCGGCGGGTGGGGCGGGTTACCCGCCGTTACGCCCTGGCGGGTCCAGCGGACTCGCGGCGCAGACGCTGGGGAGGCCGCAGGCGCGACCCGGGGCGGGGACCGTGCTAGCTGCGTGCGTCCGCTGCGGCCTGTGGGT
..............................................................................((((...(((((((((((((.((..((.((((...(((((((((((......))))))))))).))))))..))..))...)))))))))))(((....)))..))))................................................................
...............................................................64.........................................................................................................................187.............................................................
SizePerfect hitTotal NormPerfect NormSRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR033728(GSM497073)
MALT (MALT413). (B cell)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)		SRR015362(GSM380327)
NaÌøve B Cell (Naive138). (B cell)		SRR029128(GSM416757)
H520. (cell line)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		SRR029124(GSM416753)
HeLa. (hela)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR015360(GSM380325)
Plasma B cells (PC137). (B cell)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR189784SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM339994(GSM339994)
hues6. (cell line)		SRR390723(GSM850202)
total small RNA. (cell line)		SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577744(Rovira)
total RNA. (breast)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR039637(GSM518474)
THP1_total_sRNAs. (cell line)		SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)		SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)		SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039191(GSM494810)
PBMCs were isolated by ficoll gradient from t. (blood)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		GSM532876(GSM532876)
G547T. (cervix)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)		SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191590(GSM715700)
48genomic small RNA (size selected RNA from t. (breast)		SRR553575(SRX182781)
source: Kidney. (Kidney)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM532883(GSM532883)
G871N. (cervix)		SRR040028(GSM532913)
G026N. (cervix)		SRR029129(GSM416758)
SW480. (cell line)		SRR060985(GSM569189)
Human naive B cell [09-001]. (cell line)		GSM339995(GSM339995)
hues6NP. (cell line)		SRR191482(GSM715592)
5genomic small RNA (size selected RNA from to. (breast)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR343333(GSM796036)
KSHV (HHV8). (cell line)		SRR191565(GSM715675)
92genomic small RNA (size selected RNA from t. (breast)		SRR189782TAX577740(Rovira)
total RNA. (breast)		SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)		SRR033716(GSM497061)
Mentle Cell Lymphoma (MCL114). (B cell)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR033726(GSM497071)
Mututated CLL (CLLM633). (B cell)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		TAX577739(Rovira)
total RNA. (breast)		SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR191416(GSM715526)
34genomic small RNA (size selected RNA from t. (breast)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		SRR038859(GSM458542)
MM386. (cell line)		SRR015448(SRR015448)
cytoplasmic small RNAs. (breast)		SRR029126(GSM416755)
143B. (cell line)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		SRR191600(GSM715710)
90genomic small RNA (size selected RNA from t. (breast)		SRR191404(GSM715514)
47genomic small RNA (size selected RNA from t. (breast)		SRR189786SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR029132(GSM416761)
MB-MDA231. (cell line)		SRR191619(GSM715729)
166genomic small RNA (size selected RNA from . (breast)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		SRR191602(GSM715712)
60genomic small RNA (size selected RNA from t. (breast)		GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577738(Rovira)
total RNA. (breast)		SRR191623(GSM715733)
18genomic small RNA (size selected RNA from t. (breast)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR060986(GSM569190)
Human memory B cell [09-001]. (cell line)		SRR038862(GSM458545)
MM472. (cell line)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		DRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)		SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)		SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)		DRR001487(DRX001041)
"Hela long nuclear cell fraction, LNA(+)". (hela)		SRR040015(GSM532900)
G623T. (cervix)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)
..............AAGCTGTGCGACCTCTTCTG........................................................................................................................................................................................................................20110.0010.008.00--------------------------1.00----------------------------------------------------------1.00--------------------------
....................................................................AGGCAGGGGATCCCGGACG...................................................................................................................................................................1918.008.00-5.00-------------------1.00---1.00--------------------------------------1.00------------------------------------------------
.......................................................................CAGGGGATCCCGGACGTGAG...............................................................................................................................................................2017.007.005.00----------------1.00---------------1.00-------------------------------------------------------------------------------
....................................................................................................................................................................CTCGCGGCGCAGACGCTGG...................................................................1915.005.00--5.00--------------------------------------------------------------------------------------------------------------
.......................................................................CAGGGGATCCCGGACGTG.................................................................................................................................................................1815.005.00---2.00-2.00----------------1.00------------------------------------------------------------------------------------------
......GCGGCGGCAAGCTGTGCGACCTCTTCTG........................................................................................................................................................................................................................2814.004.00----3.001.00-----------------------------------------------------------------------------------------------------------
......GCGGCGGCAAGCTGTGCGAC................................................................................................................................................................................................................................2014.004.00--4.00--------------------------------------------------------------------------------------------------------------
..CTGGGCGGCGGCAAGCTG......................................................................................................................................................................................................................................1814.004.00-1.00------------------------1.00----1.00----------------------------------------------------------------1.00----------------
...................................................................................................GTTGGGTGTGTTGTGCGG.....................................................................................................................................1814.004.001.00-----3.00----------------------------------------------------------------------------------------------------------
...............AGCTGTGCGACCTCTTCTGC.......................................................................................................................................................................................................................2013.003.00---3.00-------------------------------------------------------------------------------------------------------------
................................................................................CCGGACGTGAGTCCGTGCAGTTGGGTGTGTT...........................................................................................................................................3113.003.003.00----------------------------------------------------------------------------------------------------------------
................GCTGTGCGACCTCTTCTG........................................................................................................................................................................................................................1813.003.00--2.00------------------------------------------------------------------------------------1.00-------------------------
..............................................................................................................................................................AGCGGACTCGCGGCGCAGACG.......................................................................2113.003.00------3.00----------------------------------------------------------------------------------------------------------
..............................................................................................................................................................AGCGGACTCGCGGCGCA...........................................................................1713.003.00---------------3.00-------------------------------------------------------------------------------------------------
...........................................TGGGCAGGTGTCTTCCTC.............................................................................................................................................................................................1813.003.00--------3.00--------------------------------------------------------------------------------------------------------
...................GTGCGACCTCTTCTGCGGC....................................................................................................................................................................................................................1913.003.003.00----------------------------------------------------------------------------------------------------------------
..........CGGCAAGCTGTGCGACCT..............................................................................................................................................................................................................................1813.003.00-1.00--1.00------------------------------------------------------1.00-----------------------------------------------------
............GCAAGCTGTGCGACCTCTTCTGC.......................................................................................................................................................................................................................2312.002.00------------2.00----------------------------------------------------------------------------------------------------
........GGCGGCAAGCTGTGCGAC................................................................................................................................................................................................................................1812.002.00-------------------------------------------------------------------------------------------1.00-1.00-------------------
..CTGGGCGGCGGCAAGCTGTGC...................................................................................................................................................................................................................................2112.002.00------------------------------------1.00-------------1.00--------------------------------------------------------------
....................................................................AGGCAGGGGATCCCGGAC....................................................................................................................................................................1812.002.00-1.00--------------------------------------------------------------------------------1.00------------------------------
.................................................................................CGGACGTGAGTCCGTGCAGTTGGGTGTG.............................................................................................................................................2812.002.00-----------2.00-----------------------------------------------------------------------------------------------------
............GCAAGCTGTGCGACCTCTT...........................................................................................................................................................................................................................1912.002.00------------------------------------------1.00-----------------------------------1.00----------------------------------
.........GCGGCAAGCTGTGCGACCTC.............................................................................................................................................................................................................................2012.002.00------------------------1.00----------------------------1.00-----------------------------------------------------------
...........................................................................................TCCGTGCAGTTGGGTGTG.............................................................................................................................................1812.002.00-1.00----------------------1.00----------------------------------------------------------------------------------------
.............................................................................................................................................................CAGCGGACTCGCGGCGCAGAC........................................................................2112.002.002.00----------------------------------------------------------------------------------------------------------------
................GCTGTGCGACCTCTTCTGC.......................................................................................................................................................................................................................1912.002.00---1.001.00------------------------------------------------------------------------------------------------------------
..........CGGCAAGCTGTGCGACCTCTTC..........................................................................................................................................................................................................................2212.002.001.00---------------------------1.00------------------------------------------------------------------------------------
...............................................................................CCCGGACGTGAGTCCGTGCAGTTGG..................................................................................................................................................2512.002.00----2.00------------------------------------------------------------------------------------------------------------
..................................................................................................................................................CCTGGCGGGTCCAGCGG.......................................................................................1712.002.00--2.00--------------------------------------------------------------------------------------------------------------
..CTGGGCGGCGGCAAGCTGTG....................................................................................................................................................................................................................................2012.002.00------------1.00---------------------1.00------------------------------------------------------------------------------
.......CGGCGGCAAGCTGTGCGACCT..............................................................................................................................................................................................................................2112.002.00-1.00------------------------------------------------------------------------------------------1.00--------------------
........................................................................AGGGGATCCCGGACGTGAG...............................................................................................................................................................1912.002.00-1.00---1.00-----------------------------------------------------------------------------------------------------------
.............CAAGCTGTGCGACCTCTTCTGC.......................................................................................................................................................................................................................2212.002.00----------------1.00-----------1.00------------------------------------------------------------------------------------
..............................................................................................GTGCAGTTGGGTGTGTTGTG........................................................................................................................................2012.002.00-1.00-1.00-------------------------------------------------------------------------------------------------------------
.......CGGCGGCAAGCTGTGCGAC................................................................................................................................................................................................................................1912.002.00----------------------------------------------------1.00--------------1.00---------------------------------------------
.........GCGGCAAGCTGTGCGACCTCT............................................................................................................................................................................................................................2112.002.002.00----------------------------------------------------------------------------------------------------------------
..............AAGCTGTGCGACCTCTTCTGC.......................................................................................................................................................................................................................2112.002.001.00--1.00-------------------------------------------------------------------------------------------------------------
....GGGCGGCGGCAAGCTGTG....................................................................................................................................................................................................................................1812.002.00----------1.00----------------1.00-------------------------------------------------------------------------------------
..............................................................................................................................................................AGCGGACTCGCGGCGCAGACGC......................................................................2212.002.00------2.00----------------------------------------------------------------------------------------------------------
.............CAAGCTGTGCGACCTCTTCTGCGG.....................................................................................................................................................................................................................2412.002.00---------1.001.00------------------------------------------------------------------------------------------------------
............GCAAGCTGTGCGACCTCT............................................................................................................................................................................................................................1812.002.00-----1.00----------1.00------------------------------------------------------------------------------------------------
.................................GCGGCCGGCCTGGGCAGGTG.....................................................................................................................................................................................................2011.001.00---------------------------------------------------------------------1.00-------------------------------------------
............................................................................................................................................................CCAGCGGACTCGCGGCGC............................................................................1811.001.00-----1.00-----------------------------------------------------------------------------------------------------------
........................................................................................................................................................................................................CCCGGGGCGGGGACCGCCGG..............................201.000.00-------------------1.00---------------------------------------------------------------------------------------------
...............................................................................CCCGGACGTGAGTCCGTGCAGTTGGGTGTGTTGTGCGGC....................................................................................................................................3911.001.00-------------------------------------1.00---------------------------------------------------------------------------
................................................................................................GCAGTTGGGTGTGTTGTGC.......................................................................................................................................1911.001.00---------------------1.00-------------------------------------------------------------------------------------------
............................CTTCTGCGGCCGGCCTGGGCAGGT......................................................................................................................................................................................................2411.001.00---------------------------------------1.00-------------------------------------------------------------------------
.................................................................................................................GCGGCGGGTGGGGCGGGTAA.....................................................................................................................201.000.00-------------------------------------------------------------------------------------1.00---------------------------
...............AGCTGTGCGACCTCTTCTGCGGCCGGCCTG.............................................................................................................................................................................................................3011.001.00-----------------------------------------------------------------------------------------------1.00-----------------
......................................................................GCAGGGGATCCCGGACGTG.................................................................................................................................................................1911.001.00----1.00------------------------------------------------------------------------------------------------------------
...............................................................................................................................................................GCGGACTCGCGGCGCAGACGCT.....................................................................2211.001.00------------------------------------------------1.00----------------------------------------------------------------
.......................GACCTCTTCTGCGGCCGGCCTGGGC..........................................................................................................................................................................................................2511.001.00-----------------------------------------------------------------------------1.00-----------------------------------
...............................................CAGGTGTCTTCCTCGAGAGG.......................................................................................................................................................................................2011.001.001.00----------------------------------------------------------------------------------------------------------------
.CCTGGGCGGCGGCAAGC........................................................................................................................................................................................................................................1711.001.00-----1.00-----------------------------------------------------------------------------------------------------------
...........................TCTTCTGCGGCCGGCGGTT............................................................................................................................................................................................................191.000.00------------------------------------------------------------------1.00----------------------------------------------
.................................GCGGCCGGCCTGGGCAGGTGTCTTCCTCGAGAGGCAGGCAGGGGATCCCGGACGTG.................................................................................................................................................................5611.001.00-------------------------------------------------------------------------------------------------------------1.00---
..............AAGCTGTGCGACCTCTTCTGCG......................................................................................................................................................................................................................2211.001.00-------------------------------1.00---------------------------------------------------------------------------------
..........................................................................................................................GGGGCGGGTTACCCGCCG..............................................................................................................1811.001.00-----------------------------------------------------------------------------------------------------------1.00-----
..........................................CTGGGCAGGTGTCTTCCT..............................................................................................................................................................................................1811.001.00-------------------------------------------------------1.00---------------------------------------------------------
.........................................................................................................................................................................................AGGCCGCAGGCGCGACCCGGGGC..........................................2311.001.00---------------------------------------------------------1.00-------------------------------------------------------
.........................................................................GGGGATCCCGGACGTGA................................................................................................................................................................1711.001.00----------------------1.00------------------------------------------------------------------------------------------
................GCTGTGCGACCTCTTCTTCGG.....................................................................................................................................................................................................................211.000.00---------------------------------1.00-------------------------------------------------------------------------------
.............................................................................................................................................................CAGCGGACTCGCGGCGC............................................................................1711.001.00-----------------------1.00-----------------------------------------------------------------------------------------
................................................................AGGCAGGCAGGGGATTTCC.......................................................................................................................................................................191.000.00------------------1.00----------------------------------------------------------------------------------------------
...............AGCTGTGCGACCTCTT...........................................................................................................................................................................................................................1611.001.00--------------------------1.00--------------------------------------------------------------------------------------
..........CGGCAAGCTGTGCGACCTC.............................................................................................................................................................................................................................1911.001.00-----------------------1.00-----------------------------------------------------------------------------------------
..........CGGCAAGCTGTGCGACCTCTTCT.........................................................................................................................................................................................................................2311.001.00-------------------------------------------------1.00---------------------------------------------------------------
...............................................................................................................GTGCGGCGGGTGGGGAGA.........................................................................................................................181.000.00---------1.00-------------------------------------------------------------------------------------------------------
...............................................................................................................................................................................................................CGGGGACCGTGCTAGCTG.........................1811.001.00--------------------------------------------------------------------------1.00--------------------------------------
.........................................................................................................................................................................................................................GCTAGCTGCGTGCGTCCTCTG............211.000.00--------------------------------------------------------------------------------1.00--------------------------------
..........................................................................................................................................................................................................CGGGGCGGGGACCGTGCA..............................181.000.00------------------1.00----------------------------------------------------------------------------------------------
...............................CTGCGGCCGGCCTGGGCAGGTGT....................................................................................................................................................................................................2311.001.001.00----------------------------------------------------------------------------------------------------------------
..........CGGCAAGCTGTGCGACCTCTTCTGCGGC....................................................................................................................................................................................................................2811.001.00-------------------------------------------------------------1.00---------------------------------------------------
.................................................................................................................................................................................................GGCGCGACCCGGGGCTGAG......................................191.000.00---------1.00-------------------------------------------------------------------------------------------------------
........................................................................AGGGGATCCCGGACGTGAGTCCGT..........................................................................................................................................................2411.001.00--------------------------------------------------------------------------------------------------1.00--------------
..............................TCTGCGGCCGGCCTGGGCAGG.......................................................................................................................................................................................................2111.001.00-----------------1.00-----------------------------------------------------------------------------------------------
......................................................................GCAGGGGATCCCGGAAC...................................................................................................................................................................171.000.00----------------------------------------------------------------------------------------------1.00------------------
........GGCGGCAAGCTGTGCGACCTCTTCTGC.......................................................................................................................................................................................................................2711.001.00----------------------------------------------------------------------------1.00------------------------------------
............................................................................................................................................................................GCAGACGCTGGGGAGGCCG...........................................................1911.001.001.00----------------------------------------------------------------------------------------------------------------
............................................................................................................................................................................................................GGGCGGGGACCGTGCGC.............................171.000.00--------------------------------------------1.00--------------------------------------------------------------------
..................................................GTGTCTTCCTCGAGAGGCAGGCAGGGG.............................................................................................................................................................................2711.001.00------------------------------------------------------------------------------------------------------1.00----------
........................................................................AGGGGATCCCGGACGTGA................................................................................................................................................................1811.001.00----------------------------------------------------------1.00------------------------------------------------------
...................................................................CAGGCAGGGGATCCCGGACGT..................................................................................................................................................................2111.001.00-1.00---------------------------------------------------------------------------------------------------------------
..........................................................CTCGAGAGGCAGGCAGGGGAT...........................................................................................................................................................................2111.001.00---1.00-------------------------------------------------------------------------------------------------------------
..........................................................CTCGAGAGGCAGGCAGGGGATCCCGGAC....................................................................................................................................................................2811.001.00-----------------------------------1.00-----------------------------------------------------------------------------
.......................................................................................................................................................................................................................................TCCGCTGCGGCCTGTGGG.1811.001.00-------------------------------------------1.00---------------------------------------------------------------------
.........................................................................................................................................................................................................CCGGGGCGGGGACCGCCGG..............................191.000.00------------------------------------------------------------------------------------------------------------1.00----
........GGCGGCAAGCTGTGCGACCTC.............................................................................................................................................................................................................................2111.001.00-----1.00-----------------------------------------------------------------------------------------------------------
......................................CGGCCTGGGCAGGTGTCTT.................................................................................................................................................................................................1911.001.00-------------------------------------------------------------------------------------------------1.00---------------
..............................TCTGCGGCCGGCCTGGGC..........................................................................................................................................................................................................1811.001.00--------------------1.00--------------------------------------------------------------------------------------------
................................................................................................GCAGTTGGGTGTGTTGTG........................................................................................................................................1811.001.001.00----------------------------------------------------------------------------------------------------------------
...................................................................CAGGCAGGGGATCCCGGAC....................................................................................................................................................................1911.001.00---1.00-------------------------------------------------------------------------------------------------------------
.............CAAGCTGTGCGACCTCTTCTG........................................................................................................................................................................................................................2111.001.00----------------------------------------------1.00------------------------------------------------------------------
................................................................AGGCAGGCAGGGGATCCCGGACACC.................................................................................................................................................................251.000.00--------------1.00--------------------------------------------------------------------------------------------------
....................TGCGACCTCTTCTGCGGCCGGCC...............................................................................................................................................................................................................2311.001.00------------------------------1.00----------------------------------------------------------------------------------
......................................................................GCAGGGGATCCCGGACGT..................................................................................................................................................................1811.001.00--------------------------------------------------------------------------------------------------------------1.00--
...........GGCAAGCTGTGCGACCTC.............................................................................................................................................................................................................................1811.001.00-----------------------------------------1.00-----------------------------------------------------------------------
..............................................................................................................................................................AGCGGACTCGCGGCGCAGACGCT.....................................................................2311.001.00--------------------------------1.00--------------------------------------------------------------------------------
..............AAGCTGTGCGACCTCTTC..........................................................................................................................................................................................................................1811.001.00-------------1.00---------------------------------------------------------------------------------------------------
.............................TTCTGCGGCCGGCCTGGGCAGGTGTCTTCCCC.............................................................................................................................................................................................321.000.00----------------------------------------------------------------------------------------1.00------------------------
.CCTGGGCGGCGGCAAGCT.......................................................................................................................................................................................................................................1811.001.00------------------------------------------------------------1.00----------------------------------------------------
...........................................................................................................................................................................................................GGGGCGGGGACCGTGTATA............................191.000.00-----------------------------1.00-----------------------------------------------------------------------------------
..............................................................................................................................................................AGCGGACTCGCGGCGCAGACGCTG....................................................................2411.001.00---------------------------------------------1.00-------------------------------------------------------------------
....................................................................AGGCAGGGGATCCCGGACGTGA................................................................................................................................................................2211.001.00---------------------------------------------------------------------------------------------------1.00-------------
.................CTGTGCGACCTCTTCTGC.......................................................................................................................................................................................................................1811.001.00-----1.00-----------------------------------------------------------------------------------------------------------
........................................................................................GAGTCCGTGCAGTTGGGTGTGTTG..........................................................................................................................................2411.001.001.00----------------------------------------------------------------------------------------------------------------
...........................................................TCGAGAGGCAGGCAGGGG.............................................................................................................................................................................1811.001.00---------------------------------------------------------------------------------1.00-------------------------------
................................................................................................................................................................CGGACTCGCGGCGCAG..........................................................................1611.001.00-----------------------------------------------------------------------------------------------------1.00-----------
.........................................................CCTCGAGAGGCAGGCAGGGGATCCCGGAC....................................................................................................................................................................2911.001.00-----------------------------------------------------------------------------------------1.00-----------------------
.....................................................................................CGTGAGTCCGTGCAGTTGGG.................................................................................................................................................2011.001.00---1.00-------------------------------------------------------------------------------------------------------------
................................................................AGGCAGGCAGGGGATCCCGGACCCC.................................................................................................................................................................251.000.00--------------1.00--------------------------------------------------------------------------------------------------
...............................................................................................................................................................................................................................TGCGTGCGTCCGCTGGGG.........181.000.00-------------------------------------------------------------------------------------------------------1.00---------
.........GCGGCAAGCTGTGCGACCT..............................................................................................................................................................................................................................1911.001.00-1.00---------------------------------------------------------------------------------------------------------------
..............................................................................................................................................................................AGACGCTGGGGAGGCCGC..........................................................1811.001.00-------------------------------------------------------------------------1.00---------------------------------------
.................................GCGGCCGGCCTGGGCAGGT......................................................................................................................................................................................................1911.001.00-----------------------------1.00-----------------------------------------------------------------------------------
.................................................................................................................................................................................................................GGGACCGTGCTAGCTGCGTGCG...................2211.001.00----------------------------------------------------------------------1.00------------------------------------------
................................................................................................................................................................................................................................GCGTGCGTCCGCTGCGG.........1711.001.00-----------------------------------------------------------------------------------1.00-----------------------------
...................................................................................................GTTGGGTGTGTTGTGGTAT....................................................................................................................................191.000.00----------------------------------1.00------------------------------------------------------------------------------
..............................TCTGCGGCCGGCCTGGGCA.........................................................................................................................................................................................................1911.001.00-----------------------------------------------------------------------1.00-----------------------------------------
...................................................................CAGGCAGGGGATCCCGGACG...................................................................................................................................................................2011.001.00---------------------------------------------------------------1.00-------------------------------------------------
..............................................................................................................................................ACGCCCTGGCGGGTCCAGCGGACTCGCGG...............................................................................2911.001.00-------------------------------------------------------------------------------1.00---------------------------------
....................................GCCGGCCTGGGCAGGTGTC...................................................................................................................................................................................................1911.001.00-------------------------1.00---------------------------------------------------------------------------------------
....GGGCGGCGGCAAGCTGTGCGAC................................................................................................................................................................................................................................2211.001.00-----------------------------------------------------------------1.00-----------------------------------------------
................................................................AGGCAGGCAGGGGATCCCGG......................................................................................................................................................................2011.001.00--------------------1.00--------------------------------------------------------------------------------------------
.............................TTCTGCGGCCGGCCTGGGCAGG.......................................................................................................................................................................................................2211.001.00----------1.00------------------------------------------------------------------------------------------------------
..............AAGCTGTGCGACCTCTTCT.........................................................................................................................................................................................................................1911.001.00----------------------------------------1.00------------------------------------------------------------------------
..................................................GTGTCTTCCTCGAGAGGCAGG...................................................................................................................................................................................2111.001.00--------------------------------------------------------------1.00--------------------------------------------------
.............CAAGCTGTGCGACCTCTTCTGCG......................................................................................................................................................................................................................2311.001.00-------------------1.00---------------------------------------------------------------------------------------------
.CCTGGGCGGCGGCAAG.........................................................................................................................................................................................................................................1611.001.00----------------------------------------------------------------------------------------------------1.00------------
.....................................................TCTTCCTCGAGAGGCAGGCAGGGG.............................................................................................................................................................................2411.001.00--------------------------------------1.00--------------------------------------------------------------------------
...............................................................................CCCGGACGTGAGTCCGTGCAGTTGGGTGTGTTGTG........................................................................................................................................3511.001.00----1.00------------------------------------------------------------------------------------------------------------
.........GCGGCAAGCTGTGCGACC...............................................................................................................................................................................................................................1811.001.00------------------------------------------------------1.00----------------------------------------------------------
.........................................................................GGGGATCCCGGACGTGAGT..............................................................................................................................................................1911.001.00-1.00---------------------------------------------------------------------------------------------------------------
...............................................................................................................................................................................................CAGGCGCGACCCGGGGCGGG.......................................2011.001.00--------------------------------------------------------1.00--------------------------------------------------------
..................................CGGCCGGCCTGGGCATA.......................................................................................................................................................................................................171.000.00------------------------------1.00----------------------------------------------------------------------------------
.............................................................................................................TTGTGCGGCGGGTGGCA............................................................................................................................171.000.00--------------------------------1.00--------------------------------------------------------------------------------
..............................................................................................................................................................AGCGGACTCGCGGCGCAGAC........................................................................2011.001.00-----------------------------------------------1.00-----------------------------------------------------------------
........................................................................................................................................................................................................CCCGGGGCGGGGACCGCCG...............................191.000.00---------------------------------------------------------------------------------------------------------1.00-------
....................................GCCGGCCTGGGCAGGTG.....................................................................................................................................................................................................1720.500.50---------------------------------------------------------------------------------------------------------------0.50-
....................................................................................................................................................................................................................................GCGTCCGCTGCGGCC.......1530.330.33-------------------------------------0.33---------------------------------------------------------------------------
.........................................................................................................................................................................................................................................CGCTGCGGCCTGTGGG.1630.330.33----0.33------------------------------------------------------------------------------------------------------------
..............AAGCTGTGCGACCTC.............................................................................................................................................................................................................................1550.200.20----------------------------------------------------------------------------------------------------------------0.20
.................................GCGGCCGGCCTGGGC..........................................................................................................................................................................................................1590.110.11-----------------0.11-----------------------------------------------------------------------------------------------

Antisense strand
CCCTGGGCGGCGGCAAGCTGTGCGACCTCTTCTGCGGCCGGCCTGGGCAGGTGTCTTCCTCGAGAGGCAGGCAGGGGATCCCGGACGTGAGTCCGTGCAGTTGGGTGTGTTGTGCGGCGGGTGGGGCGGGTTACCCGCCGTTACGCCCTGGCGGGTCCAGCGGACTCGCGGCGCAGACGCTGGGGAGGCCGCAGGCGCGACCCGGGGCGGGGACCGTGCTAGCTGCGTGCGTCCGCTGCGGCCTGTGGGT
..............................................................................((((...(((((((((((((.((..((.((((...(((((((((((......))))))))))).))))))..))..))...)))))))))))(((....)))..))))................................................................
...............................................................64.........................................................................................................................187.............................................................
SizePerfect hitTotal NormPerfect NormSRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR033728(GSM497073)
MALT (MALT413). (B cell)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)		SRR015362(GSM380327)
NaÌøve B Cell (Naive138). (B cell)		SRR029128(GSM416757)
H520. (cell line)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		SRR029124(GSM416753)
HeLa. (hela)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR015360(GSM380325)
Plasma B cells (PC137). (B cell)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR189784SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM339994(GSM339994)
hues6. (cell line)		SRR390723(GSM850202)
total small RNA. (cell line)		SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577744(Rovira)
total RNA. (breast)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR039637(GSM518474)
THP1_total_sRNAs. (cell line)		SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)		SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)		SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039191(GSM494810)
PBMCs were isolated by ficoll gradient from t. (blood)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		GSM532876(GSM532876)
G547T. (cervix)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)		SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191590(GSM715700)
48genomic small RNA (size selected RNA from t. (breast)		SRR553575(SRX182781)
source: Kidney. (Kidney)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM532883(GSM532883)
G871N. (cervix)		SRR040028(GSM532913)
G026N. (cervix)		SRR029129(GSM416758)
SW480. (cell line)		SRR060985(GSM569189)
Human naive B cell [09-001]. (cell line)		GSM339995(GSM339995)
hues6NP. (cell line)		SRR191482(GSM715592)
5genomic small RNA (size selected RNA from to. (breast)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR343333(GSM796036)
KSHV (HHV8). (cell line)		SRR191565(GSM715675)
92genomic small RNA (size selected RNA from t. (breast)		SRR189782TAX577740(Rovira)
total RNA. (breast)		SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)		SRR033716(GSM497061)
Mentle Cell Lymphoma (MCL114). (B cell)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR033726(GSM497071)
Mututated CLL (CLLM633). (B cell)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		TAX577739(Rovira)
total RNA. (breast)		SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR191416(GSM715526)
34genomic small RNA (size selected RNA from t. (breast)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		SRR038859(GSM458542)
MM386. (cell line)		SRR015448(SRR015448)
cytoplasmic small RNAs. (breast)		SRR029126(GSM416755)
143B. (cell line)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		SRR191600(GSM715710)
90genomic small RNA (size selected RNA from t. (breast)		SRR191404(GSM715514)
47genomic small RNA (size selected RNA from t. (breast)		SRR189786SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR029132(GSM416761)
MB-MDA231. (cell line)		SRR191619(GSM715729)
166genomic small RNA (size selected RNA from . (breast)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		SRR191602(GSM715712)
60genomic small RNA (size selected RNA from t. (breast)		GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577738(Rovira)
total RNA. (breast)		SRR191623(GSM715733)
18genomic small RNA (size selected RNA from t. (breast)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR060986(GSM569190)
Human memory B cell [09-001]. (cell line)		SRR038862(GSM458545)
MM472. (cell line)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		DRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)		SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)		SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)		DRR001487(DRX001041)
"Hela long nuclear cell fraction, LNA(+)". (hela)		SRR040015(GSM532900)
G623T. (cervix)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)
.............................................................................................................................................................................CTGCGGCCTCCCCAGCGTCTG........................................................ 2117.007.00-------7.00---------------------------------------------------------------------------------------------------------
.........................................................................................................................................................................................................................ACGCACGCAGCTAGC.................. 1511.001.00--------------------------------------------------------------------1.00--------------------------------------------
.........................GCCGGCCGCAGAAGAGG................................................................................................................................................................................................................ 1711.001.00--1.00--------------------------------------------------------------------------------------------------------------
..........................................................................................................................................................................................................................GCCGCAGCGGACGCACGCAGCTAG........ 2411.001.00----------------1.00------------------------------------------------------------------------------------------------
..................................................................................................................CGGCGGGTGGGGCGGGGGG..................................................................................................................... 191.000.00----------------------------------------------------------------------------------------------------------1.00------
.......................................................................................................................................................................................................................CAGGCCGCAGCGGACGCACGCAGCTAGCAC..... 3011.001.00-----------1.00-----------------------------------------------------------------------------------------------------
.................................................................................................................................................................................................CGCCCCGGGTCGCGCC......................................... 1611.001.00--------------------------------------------------------------------------------------------------------1.00--------
.......................................................................................................................................................................................................................CGGACGCACGCAGCTAGCAC............... 2011.001.00------------------------------------------------------------------------------------1.00----------------------------
........................................................................................................................................................................................................................GCGGACGCACGCAGCTAGCA.............. 2011.001.00---------------------------------------------------------------------------1.00-------------------------------------
......................................................................................................................................................................................................................CGGACGCACGCAGCTAGCACG............... 2111.001.00------------------------------------------------------------------------1.00----------------------------------------
.CCTGGGCGGCGGCAAC......................................................................................................................................................................................................................................... 161.000.00--------------1.00--------------------------------------------------------------------------------------------------
.......................................................................................................................................................................................................................GCGGACGCACGCAGCTAGCAC.............. 2111.001.00--------1.00--------------------------------------------------------------------------------------------------------
......................................................................................................................................................................................................................................CCACAGGCCGCAGCGGAC.. 1811.001.00------------------------------------------------------------------------------------------1.00----------------------
..................................................................................................................CGGCGGGTGGGGCGGGGC...................................................................................................................... 181.000.00-------------1.00---------------------------------------------------------------------------------------------------
.....................................................................................................................................................................................................CGACCCGGGGCGGGGGGGG.................................. 191.000.00-------------1.00---------------------------------------------------------------------------------------------------
......................................................................................................................................................................................................TCCCCGCCCCGGGTC..................................... 1530.330.33------------------------------------0.33----------------------------------------------------------------------------
...................................CCTGCCCAGGCCGGCC....................................................................................................................................................................................................... 1660.330.33-----------------------------------0.33-----------------------------------------------------------------------------