ID: uc001dvm.2_intron_3_0_chr1_108691009_r.3p
GENE: (6)
chr1:108690959-108691208-


(1)
AGO2.ip 		(9)
B-CELL 		(3)
BRAIN 		(18)
BREAST 		(27)
CELL-LINE 		(1)
FIBROBLAST 		(2)
HEART 		(2)
HELA 		(4)
LIVER 		(1)
OTHER 		(17)
SKIN 		(1)
TESTES 		(2)
UTERUS 		(1)
XRN.ip

Sense strand
CTCTGGTGTCTGCTCTTACAAGAACACTGATCCTGTCATGAGGGCTCCATCCTCATGACCTCATAACCCTAATTACCTCCAGAAGCCTCATCTCCTAATACCATCACATGGGAGGTTACAGCTTCAACATATGAATTTGGTGGGGGTGCAGCTCAGTCCACAGCAGGTAGTAATGTGCATTTTAAAACTTGTTTATACAGTACAAGAAGTTACTTACTGAAGAAGGACAAAAAATAGGAACATTTGAGAG
...........................................................................................................................................(((((((.....)))...)))).((((((..(((........)))..))))))..........................................................
........................................................................................................................................137............................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR037939(GSM510477)
293cand5_rep1. (cell line)		SRR189787SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR189784SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR037940(GSM510478)
293cand5_rep2. (cell line)		SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR189782SRR189785SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR553576(SRX182782)
source: Testis. (testes)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		TAX577745(Rovira)
total RNA. (breast)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR191420(GSM715530)
122genomic small RNA (size selected RNA from . (breast)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)		TAX577590(Rovira)
total RNA. (breast)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189786SRR191602(GSM715712)
60genomic small RNA (size selected RNA from t. (breast)		SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)		TAX577453(Rovira)
total RNA. (breast)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		GSM450597(GSM450597)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR038852(GSM458535)
QF1160MB. (cell line)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		TAX577740(Rovira)
total RNA. (breast)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR015360(GSM380325)
Plasma B cells (PC137). (B cell)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		TAX577580(Rovira)
total RNA. (breast)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR343333(GSM796036)
KSHV (HHV8). (cell line)		SRR037937(GSM510475)
293cand2. (cell line)		TAX577741(Rovira)
total RNA. (breast)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577579(Rovira)
total RNA. (breast)		SRR015361(GSM380326)
Memory B cells (MM55). (B cell)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)		SRR015359(GSM380324)
Germinal Center B cell (GC136). (B cell)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR330881(SRX091719)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191613(GSM715723)
66genomic small RNA (size selected RNA from t. (breast)		SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)		SRR191599(GSM715709)
89genomic small RNA (size selected RNA from t. (breast)		SRR343332(GSM796035)
"KSHV (HHV8), EBV (HHV-4)". (cell line)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR189783DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)		SRR038855(GSM458538)
D10. (cell line)		SRR033725(GSM497070)
Unmutated CLL (CLLU626). (B cell)		SRR033726(GSM497071)
Mututated CLL (CLLM633). (B cell)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		TAX577739(Rovira)
total RNA. (breast)		SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR191594(GSM715704)
70genomic small RNA (size selected RNA from t. (breast)		SRR037938(GSM510476)
293Red. (cell line)		SRR037941(GSM510479)
293DroshaTN. (cell line)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		SRR444060(SRX128908)
Sample 18cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)		SRR029132(GSM416761)
MB-MDA231. (cell line)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR191393(GSM715503)
22genomic small RNA (size selected RNA from t. (breast)		SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)		TAX577738(Rovira)
total RNA. (breast)		SRR060986(GSM569190)
Human memory B cell [09-001]. (cell line)		SRR038856(GSM458539)
D11. (cell line)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		SRR343337SRR191550(GSM715660)
27genomic small RNA (size selected RNA from t. (breast)		TAX577743(Rovira)
total RNA. (breast)
.............................................................................................................................................GGGGGTGCAGCTCAGTGG...........................................................................................18427.750.50-2.505.002.250.250.251.250.250.250.50-0.251.50---0.25----1.00---0.75---0.75--0.250.500.25-0.500.250.500.250.25--0.250.500.500.250.250.25--0.25---0.25-0.25-0.25--0.250.250.250.25-0.25-0.25--0.25-0.25-0.25-0.25-0.250.250.250.250.250.25-0.25-0.25--0.250.25
............................................................................................................................................................................................................................AGAAGGACAAAAAATAGGATTT........2211.000.008.00----3.00----------------------------------------------------------------------------------------
.............................................................................................................................................GGGGGTGCAGCTCAGTGGT..........................................................................................1948.250.50-0.50--0.25---0.250.50---0.250.50--------------0.25--0.25---0.25-0.250.25-0.500.500.25---0.250.25---0.25-0.25-0.25---0.250.25----0.25-0.25-0.250.25-0.25------------0.25---0.25---
.............................................................................................................................................GGGGGTGCAGCTCAGTGGTA.........................................................................................2045.750.50-0.50-0.250.25---0.250.75---0.25---0.25-------0.25------0.25-0.50--0.50--0.25-----0.25--0.50---0.25----0.25----------------0.25------------------
.......................................................................................................................................................................................................................ACTGAAGAAGGACAAAAAATAGG............2313.003.00----3.00-----------------------------------------------------------------------------------------
.............................................................................................................................................GGGGGTGCAGCTCAGAGG...........................................................................................183.000.00--1.00-----1.00----1.00--------------------------------------------------------------------------------
............................................................................................................................................TGGGGGTGCAGCTCAGTGG...........................................................................................192.000.00-2.00--------------------------------------------------------------------------------------------
................................................................................................................................................................................................................GTTACTTACTGAAGAAGGACAAAAAA................2611.001.00-----------------1.00----------------------------------------------------------------------------
................................................................................................................................................................CAGCAGGTAGTAATGTTTTG......................................................................201.000.00----------1.00-----------------------------------------------------------------------------------
......................................................................................................................................................................................................................TACTGAAGAAGGACAAAAAATAGGAACAA.......291.000.00-------------------------------1.00--------------------------------------------------------------
........................................................................................................................................................................................................................CTGAAGAAGGACAAAAAATAGGAACATT......2811.001.00----1.00-----------------------------------------------------------------------------------------
......................................................................................................................................................................................................................TACTGAAGAAGGACAAAAAATAG.............2311.001.00------------------------------1.00---------------------------------------------------------------
.......................................................................................................................................................................................................................ACTGAAGAAGGACAAAAAATAG.............2211.001.00--------------1.00-------------------------------------------------------------------------------
......................................................................................................................................................................................................AGTACAAGAAGTTACTTACT................................2011.001.00-------------------1.00--------------------------------------------------------------------------
.............................................................................................................................................GGGGGTGCAGCTCAGAGA...........................................................................................181.000.00----------------------------1.00-----------------------------------------------------------------
..........................................................................................................................................................................................................CAAGAAGTTACTTACTGAAGAAGGAC......................2611.001.00---------------------------1.00------------------------------------------------------------------
..................................................................................................................................................................................ATTTTAAAACTTGTTTACCA....................................................201.000.00---1.00------------------------------------------------------------------------------------------
.............................................................................................................................................GGGGGTGCAGCTCAGAG............................................................................................171.000.00---1.00------------------------------------------------------------------------------------------
.......................................................................................................................................................................................................................ACTGAAGAAGGACAAAAAATT..............211.000.00--------------------1.00-------------------------------------------------------------------------
..............................................................................................................................................................................................................................AAGGACAAAAAATAGGAACATTTGAGAG2811.001.00----------------------1.00-----------------------------------------------------------------------
.............................................................................................................................................GGGGGTGCAGCTCAGTCGGA.........................................................................................201.000.00-------1.00--------------------------------------------------------------------------------------
.............................................................................................................................................GGGGGTGCAGCTCAGATGG..........................................................................................191.000.00-----------1.00----------------------------------------------------------------------------------
.............................................................................................................................................GGGGGTGCAGCTCAGTCCGGGG.......................................................................................221.000.00-----------------------1.00----------------------------------------------------------------------
.............................................................................................................................................................................................................GAAGTTACTTACTGAAGAAGGAC......................2311.001.00------------------1.00---------------------------------------------------------------------------
.........................................................................................................................................................................................................................TGAAGAAGGACAAAAAATAGGAACATTTGAGA.3211.001.00---------------1.00------------------------------------------------------------------------------
...........................................................................................................................................................................................................AAGAAGTTACTTACTGAAGA...........................2011.001.00------------------------1.00---------------------------------------------------------------------
..........................................................................................................................................................................................................................GAAGAAGGACAAAAAATAG.............1911.001.00------1.00---------------------------------------------------------------------------------------
.............................................................................................................................................GGGGGTGCAGCTCAGTCT...........................................................................................181.000.00--------------------------1.00-------------------------------------------------------------------
.............................................................................................................................................GGGGGTGCAGCTCAGAGGT..........................................................................................191.000.00-1.00--------------------------------------------------------------------------------------------
.............................................................................................................................................GGGGGTGCAGCTCAGAGC...........................................................................................181.000.00-------1.00--------------------------------------------------------------------------------------
.............................................................................................................................................GGGGGTGCAGCTCAGTTGGG.........................................................................................2040.750.50----------0.75-----------------------------------------------------------------------------------
.............................................................................................................................................GGGGGTGCAGCTCAGTGGG..........................................................................................1940.750.50--------0.25--------------------------0.50----------------------------------------------------------
.............................................................................................................................................GGGGGTGCAGCTCAGT.............................................................................................1640.500.50---0.25---------------------------------------------------------------------------------------0.25--
..........................................................................................................................................................................................................................................TAGGAACATTTGAGAG1620.500.50---------------0.50------------------------------------------------------------------------------
.............................................................................................................................................GGGGGTGCAGCTCAGTGT...........................................................................................1840.500.50------------0.25--------------------0.25------------------------------------------------------------
...........................................................CTCATAACCCTAATT................................................................................................................................................................................1530.330.33--------------------------------------------------0.33-------------------------------------------
.............................................................................................................................................GGGGGTGCAGCTCAGTGGAA.........................................................................................2040.250.50------0.25---------------------------------------------------------------------------------------
..............................................................................................................................................................................................................................AAGGACAAAAAATAGG............1680.250.25----------------------------------------------------------------------------------------0.25-----
.............................................................................................................................................GGGGGTGCAGCTCAGTTGT..........................................................................................1940.250.50-----------0.25----------------------------------------------------------------------------------
.............................................................................................................................................GGGGGTGCAGCTCAGTAGC..........................................................................................1940.250.50-----0.25----------------------------------------------------------------------------------------
.............................................................................................................................................GGGGGTGCAGCTCAGTGGAG.........................................................................................2040.250.50-----------------------------------------------------------------------------0.25----------------
.............................................................................................................................................GGGGGTGCAGCTCAGTGGC..........................................................................................1940.250.50-----------------------------------0.25----------------------------------------------------------
.............................................................................................................................................GGGGGTGCAGCTCAGTGC...........................................................................................1840.250.50------0.25---------------------------------------------------------------------------------------
.............................................................................................................................................GGGGGTGCAGCTCAGTTGG..........................................................................................1940.250.50-----------0.25----------------------------------------------------------------------------------
........................................................................................CATCTCCTAATACCATCACATGG...........................................................................................................................................2340.250.25-------------------------------------------------------------------------------0.25--------------

Antisense strand
CTCTGGTGTCTGCTCTTACAAGAACACTGATCCTGTCATGAGGGCTCCATCCTCATGACCTCATAACCCTAATTACCTCCAGAAGCCTCATCTCCTAATACCATCACATGGGAGGTTACAGCTTCAACATATGAATTTGGTGGGGGTGCAGCTCAGTCCACAGCAGGTAGTAATGTGCATTTTAAAACTTGTTTATACAGTACAAGAAGTTACTTACTGAAGAAGGACAAAAAATAGGAACATTTGAGAG
...........................................................................................................................................(((((((.....)))...)))).((((((..(((........)))..))))))..........................................................
........................................................................................................................................137............................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR037939(GSM510477)
293cand5_rep1. (cell line)		SRR189787SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR189784SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR037940(GSM510478)
293cand5_rep2. (cell line)		SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR189782SRR189785SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR553576(SRX182782)
source: Testis. (testes)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		TAX577745(Rovira)
total RNA. (breast)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR191420(GSM715530)
122genomic small RNA (size selected RNA from . (breast)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)		TAX577590(Rovira)
total RNA. (breast)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189786SRR191602(GSM715712)
60genomic small RNA (size selected RNA from t. (breast)		SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)		TAX577453(Rovira)
total RNA. (breast)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		GSM450597(GSM450597)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR038852(GSM458535)
QF1160MB. (cell line)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		TAX577740(Rovira)
total RNA. (breast)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR015360(GSM380325)
Plasma B cells (PC137). (B cell)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		TAX577580(Rovira)
total RNA. (breast)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR343333(GSM796036)
KSHV (HHV8). (cell line)		SRR037937(GSM510475)
293cand2. (cell line)		TAX577741(Rovira)
total RNA. (breast)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577579(Rovira)
total RNA. (breast)		SRR015361(GSM380326)
Memory B cells (MM55). (B cell)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)		SRR015359(GSM380324)
Germinal Center B cell (GC136). (B cell)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR330881(SRX091719)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191613(GSM715723)
66genomic small RNA (size selected RNA from t. (breast)		SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)		SRR191599(GSM715709)
89genomic small RNA (size selected RNA from t. (breast)		SRR343332(GSM796035)
"KSHV (HHV8), EBV (HHV-4)". (cell line)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR189783DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)		SRR038855(GSM458538)
D10. (cell line)		SRR033725(GSM497070)
Unmutated CLL (CLLU626). (B cell)		SRR033726(GSM497071)
Mututated CLL (CLLM633). (B cell)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		TAX577739(Rovira)
total RNA. (breast)		SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR191594(GSM715704)
70genomic small RNA (size selected RNA from t. (breast)		SRR037938(GSM510476)
293Red. (cell line)		SRR037941(GSM510479)
293DroshaTN. (cell line)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		SRR444060(SRX128908)
Sample 18cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)		SRR029132(GSM416761)
MB-MDA231. (cell line)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR191393(GSM715503)
22genomic small RNA (size selected RNA from t. (breast)		SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)		TAX577738(Rovira)
total RNA. (breast)		SRR060986(GSM569190)
Human memory B cell [09-001]. (cell line)		SRR038856(GSM458539)
D11. (cell line)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		SRR343337SRR191550(GSM715660)
27genomic small RNA (size selected RNA from t. (breast)		TAX577743(Rovira)
total RNA. (breast)
..........................................................................................................................................................................................................................GAAGAAGGACAAAAAATAT............. 191.000.00----------------1.00-----------------------------------------------------------------------------
........................................................................................................................................................................AGTAATGTGCATTTTAAATATG............................................................ 221.000.00---1.00------------------------------------------------------------------------------------------