ID: uc001duw.1_intron_2_0_chr1_104231935_r.3p
GENE: AMY1C(8)
chr1:104231885-104232134-


(1)
AGO2.ip
(1)
BRAIN
(6)
BREAST
(9)
CELL-LINE
(1)
HEART
(2)
OTHER
(6)
SKIN
(1)
TESTES
(1)
UTERUS

Sense strand
ATATGGCAAAAGAGAACCAGAGGATAGAGAGATGATGAAGACCCAGTAAAGGGCTATAAAAATCAATGAAGGCATTGGATTCTAGATAAAGTCACTGAATGCAGAGACACAAGTAACAGGATAGGTTGGGTTTGGTTTAAAGGAGAAGGAAGAGATAAATATATATATGCTAAAATTTGGCTTTTCCTCCTGTAATTAAGGATGTTAATGATTGGGTTGGGCCACCAAATGATAATGGAGTAACTAAAGA
........................................................................................................((((.((((((((.......))))..))))))))................................................................................................................
.................................................................................................98................................................................164....................................................................................
SizePerfect hitTotal NormPerfect NormSRR191607(GSM715717)
192genomic small RNA (size selected RNA from . (breast)
SRR390723(GSM850202)
total small RNA. (cell line)
SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)
SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)
SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)
SRR015448(SRR015448)
cytoplasmic small RNAs. (breast)
SRR189782SRR207110(GSM721072)
Nuclear RNA. (cell line)
SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR029128(GSM416757)
H520. (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR015447(SRR015447)
nuclear small RNAs. (breast)
TAX577743(Rovira)
total RNA. (breast)
SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)
TAX577740(Rovira)
total RNA. (breast)
SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR189786SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)
SRR553576(SRX182782)
source: Testis. (testes)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)
SRR029130(GSM416759)
DLD2. (cell line)
......................................................................................................AGAGACACAAGTAACTCA..................................................................................................................................1832.000.0021.00-4.003.00-3.00-------1.00---------------
.....................................................................................................CAGAGACACAAGTAACTCA..................................................................................................................................198.000.005.00-1.001.00-1.00-----------------------
......................................................................................................AGAGACACAAGTAACTC...................................................................................................................................175.000.00-5.00---------------------------
..........................................................................................................................................................................................................................................ATGGAGTAACTAAAGAAACT202.000.00--------2.00--------------------
.........................................................................................................................TAGGTTGGGTTTGGTCT................................................................................................................171.000.00-------1.00---------------------
......................................................................................................AGAGACACAAGTAACACA..................................................................................................................................181.000.00-1.00---------------------------
.............................................................................................................CAAGTAACAGGATAGGCTT..........................................................................................................................191.000.00---------1.00-------------------
.............................................................................................................CAAGTAACAGGATAGGCA...........................................................................................................................181.000.00----------------1.00------------
...........................................................................................................................................AAGGAGAAGGAAGAGATGTAA..........................................................................................211.000.00------------1.00----------------
..........................................................................................................................AGGTTGGGTTTGGTTAT...............................................................................................................171.000.00------------------1.00----------
..................................................................................................................................TTTGGTTTAAAGGAGGC.......................................................................................................171.000.00-------1.00---------------------
...................................................................................................TGCAGAGACACAAGTAACTCAA.................................................................................................................................221.000.00-1.00---------------------------
...................................................................................................TGCAGAGACACAAGTAACTCA..................................................................................................................................211.000.00--1.00--------------------------
......................................................................................................AGAGACACAAGTAACTCAA.................................................................................................................................191.000.00---1.00-------------------------
......CAAAAGAGAACCAGACTGA.................................................................................................................................................................................................................................191.000.00-----------1.00-----------------
.............................................................................................................CAAGTAACAGGATAGGTTGTGTG......................................................................................................................231.000.00---------------1.00-------------
....................................................................................................GCAGAGACACAAGTAACTCA..................................................................................................................................201.000.00---1.00-------------------------
..............................................................................................................................................................................................................AATGATTGGGTTGGGCAGCT........................201.000.00----------1.00------------------
.................................................AGGGCTATAAAAATC..........................................................................................................................................................................................1590.440.44----0.44------------------------
...............................................................................................................................................................................................GTAATTAAGGATGTTAATGATTGGGTTGGGC............................3130.330.33---------------------0.33-------
............................................................................................................................................................................................................................GCCACCAAATGATAATGGAGTAACT.....2530.330.33--------------------0.33--------
............................................................................................................................................AGGAGAAGGAAGAGATAAATATATATATGC................................................................................3030.330.33-------------------0.33---------
.............................................................................................................CAAGTAACAGGATAGGTT...........................................................................................................................1840.250.25-----------------------0.25-----
.TATGGCAAAAGAGAACCA.......................................................................................................................................................................................................................................1850.200.20---------0.20-------------------
..................................................................................TAGATAAAGTCACTGAATGCAGAGA...............................................................................................................................................2550.200.20-------------------------0.20---
.........................................................................................................................................................................................................ATGTTAATGATTGGGTTGGGC............................2160.170.17--------------------------0.17--
............................................AGTAAAGGGCTATAAAAA............................................................................................................................................................................................1860.170.17---------------------------0.17-

Antisense strand
ATATGGCAAAAGAGAACCAGAGGATAGAGAGATGATGAAGACCCAGTAAAGGGCTATAAAAATCAATGAAGGCATTGGATTCTAGATAAAGTCACTGAATGCAGAGACACAAGTAACAGGATAGGTTGGGTTTGGTTTAAAGGAGAAGGAAGAGATAAATATATATATGCTAAAATTTGGCTTTTCCTCCTGTAATTAAGGATGTTAATGATTGGGTTGGGCCACCAAATGATAATGGAGTAACTAAAGA
........................................................................................................((((.((((((((.......))))..))))))))................................................................................................................
.................................................................................................98................................................................164....................................................................................
SizePerfect hitTotal NormPerfect NormSRR191607(GSM715717)
192genomic small RNA (size selected RNA from . (breast)
SRR390723(GSM850202)
total small RNA. (cell line)
SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)
SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)
SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)
SRR015448(SRR015448)
cytoplasmic small RNAs. (breast)
SRR189782SRR207110(GSM721072)
Nuclear RNA. (cell line)
SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR029128(GSM416757)
H520. (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR015447(SRR015447)
nuclear small RNAs. (breast)
TAX577743(Rovira)
total RNA. (breast)
SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)
TAX577740(Rovira)
total RNA. (breast)
SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR189786SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)
SRR553576(SRX182782)
source: Testis. (testes)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)
SRR029130(GSM416759)
DLD2. (cell line)
...................................................................................................TGCAGAGACACAAGTAACATC.................................................................................................................................. 214.000.00----4.00------------------------
........................................................................................................................................................AGATAAATATATATAACG................................................................................ 183.000.00------3.00----------------------
....................................................................................................GCAGAGACACAAGTAACG.................................................................................................................................... 181.000.001.00----------------------------
..................................................................................................................................................................................GGCTTTTCCTCCTGTCTC...................................................... 181.000.00--------------1.00--------------
..................................................................................................................................................AGGAAGAGATAAATACTCG..................................................................................... 191.000.00-----------------1.00-----------
...................................................................................................GTTACTTGTGTCTCTGCA..................................................................................................................................... 1860.670.670.50---------------------------0.17
......TCTCTCTATCCTCTGGTTCTCTTTTG.......................................................................................................................................................................................................................... 2640.250.25----------------------0.25------
................GTCTTCATCATCTCTCTATCCTCTGG................................................................................................................................................................................................................ 2650.200.20------------------------0.20----