ID: uc001dst.2_intron_7_0_chr1_100535242_f.3p
GENE: (8)
chr1:100542521-100542770+


(3)
B-CELL
(1)
BRAIN
(1)
BREAST
(17)
CELL-LINE
(2)
HEART
(1)
HELA
(1)
KIDNEY
(2)
LIVER
(1)
OTHER
(4)
SKIN
(1)
XRN.ip

Sense strand
CTCAGTCTGGATCTATGTCAGCAGAGGGACTTTTCATCTGCTTATGTGACCTGGACTAGTGATCTCAGACATATTCAGGGCAATTATTGCTGAAAATCAGCCAAATTGTAGAAAAGTGCCAATAGTCCTTTTATAGTGTAGATTGAAAGAAGTCACTTTTTAAAACTTTATTCTGATAAATCTTTTTTTTTTTTTTTCAGACCATAGTCTTGAGTTTACTTATGAGGTCAATTGGAAATAAGAACACCAT
.................................................................................................................................(((((((.(((((((..((((((...))))))..)).))))).))).))))......................................................................
.................................................................................................................................130.........................................................190..........................................................
SizePerfect hitTotal NormPerfect NormSRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)
SRR033724(GSM497069)
L428 cell line (L428). (B cell)
SRR033716(GSM497061)
Mentle Cell Lymphoma (MCL114). (B cell)
SRR029128(GSM416757)
H520. (cell line)
SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)
SRR553575(SRX182781)
source: Kidney. (Kidney)
SRR189787SRR191566(GSM715676)
94genomic small RNA (size selected RNA from t. (breast)
GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)
DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
GSM416733(GSM416733)
HEK293. (cell line)
SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)
SRR037931(GSM510469)
293GFP. (cell line)
SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)
SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
GSM359191(GSM359191)
HepG2_3pM_5. (cell line)
SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)
.......................................................................................................................................................................TTATTCTGATAAATCACTA................................................................1960.000.0060.00--------------------------------
................................................................................................................................................................................TAAATCTTTTTTTTTTTTTTTAATG.................................................258.000.00--3.00--3.001.00-1.00------------------------
..............................................................................................................................................................................................................................TGAGGTCAATTGGAAATAAGAACA....2414.004.00----4.00----------------------------
.............................................................................................................................................................................................................................ATGAGGTCAATTGGAAATAAGA.......2214.004.00-------4.00-------------------------
.............................................................................................................................................................................................................................ATGAGGTCAATTGGAAA............1712.002.00--------------2.00------------------
......................................................................................................................................AGTGTAGATTGAAAGAAGTCACTT............................................................................................2412.002.00-----------2.00---------------------
...................AGCAGAGGGACTTTTCATCTG..................................................................................................................................................................................................................2112.002.00------------2.00--------------------
......................................................................................................................................................................................................................................ATTGGAAATAAGAACACC..1812.002.00-------------------1.00---1.00---------
................................................................................................................................................................................TAAATCTTTTTTTTTTTTTTAATG..................................................242.000.00--2.00------------------------------
....................................................................................................................................................................................TCTTTTTTTTTTTTTTTCACTAG...............................................232.000.00--------1.00---------------------1.00--
......................................................................................................AAATTGTAGAAAAGTGCCAATAGTCCTTTTA.....................................................................................................................3112.002.00--------------------1.00-1.00----------
....................................................................................................................................................................................................................................CAATTGGAAATAAGAACACC..2012.002.00----------2.00----------------------
.....................................................................................................................................................................................................................................AATTGGAAATAAGAACACC..1912.002.00---------1.00--------1.00--------------
..................................................................................................................................................................................AATCTTTTTTTTTTTTTTTCGG..................................................222.000.00-2.00-------------------------------
.................TCAGCAGAGGGACTTTTC.......................................................................................................................................................................................................................1811.001.00----------------------------1.00----
...................................................................................................................................................................................ATCTTTTTTTTTTTTTTTCATCCG...............................................241.000.00--------1.00------------------------
...............................................................................................................................................................................ATAAATCTTTTTTTTTTTTTTAG....................................................231.000.00-----1.00---------------------------
....................................................................................................................................................................................TCTTTTTTTTTTTTTTTCACACG...............................................231.000.00--1.00------------------------------
...................................................................................................................................TATAGTGTAGATTGAAAGAAGTCA...............................................................................................2411.001.00------------------------1.00--------
.....................................................................................................................................................................................................................GTTTACTTATGAGGTCAATTGGAAATAAGAACACCA.3611.001.00--------------------------1.00------
...................................................................................................................................................................................ATCTTTTTTTTTTTTTTTCAAGG................................................231.000.00-1.00-------------------------------
.........................................................................................................TTGTAGAAAAGTGCCTATG..............................................................................................................................191.000.00----------------1.00----------------
...AGTCTGGATCTATGTCAGCAGAGGGA.............................................................................................................................................................................................................................2611.001.00-------------------------1.00-------
................................................................................................................................................................................................................CTTGAGTTTACTTATGAGGT......................2011.001.00-----------------1.00---------------
....................................................................................................................................................................................TCTTTTTTTTTTTTTTTCACCGG...............................................231.000.00------1.00--------------------------
...............................................................................................................................................................................................................................GAGGTCAATTGGAAATAAGAAA.....221.000.00-----------------------------1.00---
........................................................................................................................................................................................TTTTTTTTTTTTTCAGACCCTG............................................221.000.00---1.00-----------------------------
...................................................................................................................................................................................ATCTTTTTTTTTTTTTTTCGGAG................................................231.000.00-1.00-------------------------------
....................................................................................................................................................................................TCTTTTTTTTTTTTTTTCAGTTCC..............................................241.000.00-1.00-------------------------------
..........................................TATGTGACCTGGACTAGTGATC..........................................................................................................................................................................................2211.001.00---------1.00-----------------------
...................................................................................................................................................................................ATCTTTTTTTTTTTTTTTCACTTG...............................................241.000.00-1.00-------------------------------
...............................................................................................................................................................................ATAAATCTTTTTTTTTTTTTTTAAA..................................................251.000.00-----1.00---------------------------
.......................................................................................................................................................................................TTTTTTTTTTTTTTCAGACCACGG...........................................241.000.00---1.00-----------------------------
.........................................................................................................................................................................................TTTTTTTTTTTTCAGACCGGG............................................211.000.00---1.00-----------------------------
............CTATGTCAGCAGAGGGA.............................................................................................................................................................................................................................1711.001.00----1.00----------------------------
...............................................................................................................................................................................ATAAATCTTTTTTTTTTTTTTATG...................................................241.000.00--1.00------------------------------
................................................................................................................................................................................TAAATCTTTTTTTTTTTTTCTTG...................................................231.000.00-----1.00---------------------------
........................................................................................GCTGAAAATCAGCCAAATTGTAGAAAAGTGC...................................................................................................................................3111.001.00---------------------1.00-----------
................................................................................................................................................................................TAAATCTTTTTTTTTTTTCCGG....................................................221.000.00------1.00--------------------------
..................................................................................................................................................................................AATCTTTTTTTTTTTTTTTCGGA.................................................231.000.00---1.00-----------------------------
...................................................................................................................................................................................ATCTTTTTTTTTTTTTTTCGGCT................................................231.000.00---1.00-----------------------------
................................................................................................................................................................................TAAATCTTTTTTTTTTTGGAG.....................................................211.000.00---1.00-----------------------------
...................................................................................................................................................................................ATCTTTTTTTTTTTTTTTCGCC.................................................221.000.00-1.00-------------------------------
.................................................................................................................................................................................AAATCTTTTTTTTTTTTTTTCAAG.................................................241.000.00------1.00--------------------------
....................................................................................................................................................................................TCTTTTTTTTTTTTTTTCACTTG...............................................231.000.00--1.00------------------------------
.......................................................................................................................................................................................................................................TTGGAAATAAGAACACC..1711.001.00---------------1.00-----------------
..................................................................................................................................................................................AATCTTTTTTTTTTTTTTTCATAG................................................241.000.00------1.00--------------------------
...............................................................................................................................................................................ATAAATCTTTTTTTTTTTTTGTTG...................................................241.000.00--1.00------------------------------
................................................................................................................................................................................TAAATCTTTTTTTTTTTTTTAGTG..................................................241.000.00-----1.00---------------------------
.........................................................................................................................................................................................TTTTTTTTTTTTCAGACCATTAGC.........................................241.000.00---1.00-----------------------------
..................................................................................................................................................................................AATCTTTTTTTTTTTTTTTCGC..................................................221.000.00-1.00-------------------------------
....................................................................................................CCAAATTGTAGAAAAGAG....................................................................................................................................181.000.00---------------------------1.00-----
...............................................................................................................................................................................................................TCTTGAGTTTACTTATGAGGTCAATT.................2611.001.00----1.00----------------------------
....................................................................................................................................................................................TCTTTTTTTTTTTTTTTCAGTTGT..............................................241.000.00-1.00-------------------------------
.......................................................................................................................................................................................TTTTTTTTTTTTTTCAGACCATGTC..........................................251.000.00---1.00-----------------------------
...................................................................................................................................................................................ATCTTTTTTTTTTTTTTTCAGCAGT..............................................251.000.00-1.00-------------------------------
......................................................................................................AAATTGTAGAAAAGTGC...................................................................................................................................1730.330.33-------------------------------0.33-

Antisense strand
CTCAGTCTGGATCTATGTCAGCAGAGGGACTTTTCATCTGCTTATGTGACCTGGACTAGTGATCTCAGACATATTCAGGGCAATTATTGCTGAAAATCAGCCAAATTGTAGAAAAGTGCCAATAGTCCTTTTATAGTGTAGATTGAAAGAAGTCACTTTTTAAAACTTTATTCTGATAAATCTTTTTTTTTTTTTTTCAGACCATAGTCTTGAGTTTACTTATGAGGTCAATTGGAAATAAGAACACCAT
.................................................................................................................................(((((((.(((((((..((((((...))))))..)).))))).))).))))......................................................................
.................................................................................................................................130.........................................................190..........................................................
SizePerfect hitTotal NormPerfect NormSRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)
SRR033724(GSM497069)
L428 cell line (L428). (B cell)
SRR033716(GSM497061)
Mentle Cell Lymphoma (MCL114). (B cell)
SRR029128(GSM416757)
H520. (cell line)
SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)
SRR553575(SRX182781)
source: Kidney. (Kidney)
SRR189787SRR191566(GSM715676)
94genomic small RNA (size selected RNA from t. (breast)
GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)
DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
GSM416733(GSM416733)
HEK293. (cell line)
SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)
SRR037931(GSM510469)
293GFP. (cell line)
SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)
SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
GSM359191(GSM359191)
HepG2_3pM_5. (cell line)
SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)
...........................................................................................................................TTCAATCTACACTATAAAAGGACT....................................................................................................... 2412.002.00----2.00----------------------------
.......................................................................................................................................................................................CTATGGTCTGAAAAAAAAAAAAAA........................................... 2411.001.00-------------1.00-------------------
........................................................................................................................................................................................CTATGGTCTGAAAAAAAAAAAAA........................................... 2311.001.00-------------1.00-------------------
......................................................................................................................................................................................TGGTCTGAAAAAAAAAAAAAAA.............................................. 2280.120.12--------------------------------0.12