ID: uc001dqk.2_intron_1_0_chr1_94643724_r.5p
GENE: (8)
chr1:94645081-94645330-


(1)
BRAIN 		(11)
CELL-LINE 		(1)
CERVIX 		(1)
HEART 		(2)
HELA 		(1)
OTHER 		(4)
SKIN 		(1)
XRN.ip

Sense strand
CCAGCATCAAATTTTAACAGTCTTCATTTCCTTATAGTACATCTAAAGCGGTAAGAATTTTATATAACTAGAACATTTATTAATGGGCAATTGATTTGTTTTTTGTTTTTAATTGTGGTAAAATCCACATAACAAAATTTACTTTCTTAGCCATTCTTTTTTTTTTTTTTTTTTTTTTTTTTGAGACAGAGTCTCGCTCTGTCACCCAGGCTGGGGTGCAGCAGCACAATCTCGGCTCTCTGCAGCCTCG
............................................................................................((...((.(((((((......(((((......))))).)))))))...))..))........................................................................................................
.......................................................................................88......................................................................................176........................................................................
SizePerfect hitTotal NormPerfect NormSRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR390725(GSM850204)
small rna immunoprecipitated. (cell line)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		SRR040018(GSM532903)
G701N. (cervix)		SRR037937(GSM510475)
293cand2. (cell line)		GSM359178(GSM359178)
hela_nucl_t. (hela)		SRR390723(GSM850202)
total small RNA. (cell line)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189786SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)
........................................................................................................................................................ATTCTTTTTTTTTTTTTTTTTTTTTTTTTTAAT.................................................................3355.000.0019.0021.007.007.001.00----------------
.......................................................................................................................................................CATTCTTTTTTTTTTTTTTTTTTTTTTATG.....................................................................3022.000.0014.005.002.001.00-----------------
........................................................................................................................................................ATTCTTTTTTTTTTTTTTTTTTTTTTTTATG...................................................................3118.000.008.006.00-4.00-----------------
.......................................................................................................................................................CATTCTTTTTTTTTTTTTTTTTTTTTTTTATG...................................................................3216.000.009.005.001.001.00-----------------
.......................................................................................................................................................CATTCTTTTTTTTTTTTTTTTTTTTTTAAAG....................................................................3116.000.006.004.002.004.00-----------------
........................................................................................................................................................ATTCTTTTTTTTTTTTTTTTTTTTTTTTTAAGG.................................................................3310.000.001.002.00-1.004.00-2.00--------------
.......................................................................................................................................................CATTCTTTTTTTTTTTTTTTTTTAGG.........................................................................269.000.003.006.00-------------------
.......................................................................................................................................................CATTCTTTTTTTTTTTTTTTTTTTTTTTTTTATT.................................................................348.000.005.003.00-------------------
.......................................................................................................................................................CATTCTTTTTTTTTTTTTTTTTTTTTTTAAT....................................................................317.000.003.003.00-1.00-----------------
........................................................................................................................................................ATTCTTTTTTTTTTTTTTTTTTTTTTTTTACG..................................................................327.000.002.001.001.003.00-----------------
.......................................................................................................................................................CATTCTTTTTTTTTTTTTTTTTTTTTTTTTAT...................................................................327.000.004.002.001.00------------------
.......................................................................................................................................................CATTCTTTTTTTTTTTTTTTTTTTTTTTTTATT..................................................................337.000.005.002.00-------------------
........................................................................................................................................................ATTCTTTTTTTTTTTTTTTTTTTTTTTCAAG...................................................................317.000.00-1.003.00-1.00-2.00--------------
.......................................................................................................................................................CATTCTTTTTTTTTTTTTTTTTTTTTTTTTTGTTT................................................................356.000.003.001.002.00------------------
......................................................................................................................................................CCATTCTTTTTTTTTTTTTTTTTTTTTAAG......................................................................306.000.002.003.001.00------------------
........................................................................................................................................................ATTCTTTTTTTTTTTTTTTTTTTTTTTTTAACG.................................................................335.000.002.003.00-------------------
.......................................................................................................................................................CATTCTTTTTTTTTTTTTTTTTTATTT........................................................................275.000.002.001.00-1.00--1.00--------------
........................................................................................................................................................ATTCTTTTTTTTTTTTTTTTTTTTTTTCCAG...................................................................315.000.001.001.001.001.00--1.00--------------
........................................................................................................................................................ATTCTTTTTTTTTTTTTTTTTTTTTTTTTATAG.................................................................335.000.004.00-----1.00--------------
.......................................................................................................................................................CATTCTTTTTTTTTTTTTTTTTTTTTTTTATT...................................................................325.000.003.001.001.00------------------
........................................................................................................................................................ATTCTTTTTTTTTTTTTTTTTTTTTTTTTTGTTT................................................................344.000.001.002.001.00------------------
.......................................................................................................................................................CATTCTTTTTTTTTTTTTTTTTTCCG.........................................................................264.000.001.001.001.001.00-----------------
.......................................................................................................................................................CATTCTTTTTTTTTTTTTTTTTTTTTTTCAG....................................................................314.000.00-3.00-1.00-----------------
........................................................................................................................................................ATTCTTTTTTTTTTTTTTTTTTTTTTTTAGG...................................................................314.000.002.002.00-------------------
.......................................................................................................................................................CATTCTTTTTTTTTTTTTTTTTTTTTTTTAT....................................................................314.000.003.001.00-------------------
........................................................................................................................................................ATTCTTTTTTTTTTTTTTTTTTTTTTTTTTAATG................................................................344.000.002.00--2.00-----------------
.......................................................................................................................................................CATTCTTTTTTTTTTTTTTTTTTATA.........................................................................264.000.002.001.001.00------------------
........................................................................................................................................................ATTCTTTTTTTTTTTTTTTTTTTTTTTTTCAT..................................................................323.000.002.00-1.00------------------
.......................................................................................................................................................CATTCTTTTTTTTTTTTTTTTTTTTTTTTTAAAT.................................................................343.000.002.001.00-------------------
.......................................................................................................................................................CATTCTTTTTTTTTTTTTTTTTTTTTTCCC.....................................................................303.000.001.002.00-------------------
.......................................................................................................................................................CATTCTTTTTTTTTTTTTCCG..............................................................................213.000.00-1.002.00------------------
.....................................................................................................................................................................................TGAGACAGAGTCTCGCTCTGTCACCCAGCCGG.....................................323.000.00----3.00----------------
.......................................................................................................................................................CATTCTTTTTTTTTTTTTTTTTTTTTTATTT....................................................................313.000.001.002.00-------------------
.......................................................................................................................................................CATTCTTTTTTTTTTTTTTTTTTTTTTATAG....................................................................313.000.002.00-1.00------------------
........................................................................................................................................................ATTCTTTTTTTTTTTTTTTTTTTTTTTTTTATAG................................................................343.000.003.00--------------------
.......................................................................................................................................................CATTCTTTTTTTTTTTTTTTTTTTTTTTTCCG...................................................................323.000.00-1.002.00------------------
........................................................................................................................................................ATTCTTTTTTTTTTTTTTTTTTTTTTTTTTGTTTT...............................................................353.000.001.00-1.001.00-----------------
.......................................................................................................................................................CATTCTTTTTTTTTTTTTTTTTTTTTTCGG.....................................................................303.000.002.001.00-------------------
.......................................................................................................................................................CATTCTTTTTTTTTTTTTCGG..............................................................................213.000.002.00-1.00------------------
.......................................................................................................................................................CATTCTTTTTTTTTTTTTTTTTTTTTTTTATTG..................................................................333.000.003.00--------------------
.......................................................................................................................................................CATTCTTTTTTTTTTTTTTTTTCATG.........................................................................263.000.00--1.001.00--1.00--------------
.......................................................................................................................................................CATTCTTTTTTTTTTTTTTTTTTTTTTAATT....................................................................313.000.002.001.00-------------------
.......................................................................................................................................................CATTCTTTTTTTTTTTTTTTTTTTTTTTTTATA..................................................................333.000.00-2.001.00------------------
........................................................................................................................................................ATTCTTTTTTTTTTTTTTTTTTTTTTTCTAG...................................................................313.000.001.00-1.00--1.00---------------
.......................................................................................................................................................CATTCTTTTTTTTTTTTTTTTTTTTTTATTG....................................................................313.000.00-1.002.00------------------
.......................................................................................................................................................CATTCTTTTTTTTTTTTTTTTTTTCTTG.......................................................................283.000.00--3.00------------------
......................................................................................................................................................CCATTCTTTTTTTTTTTTTTTTTTTTTTCAG.....................................................................312.000.001.00-1.00------------------
.......................................................................................................................................................CATTCTTTTTTTTTTTTTTTTTTCGG.........................................................................262.000.00--1.001.00-----------------
........................................................................................................................................................ATTCTTTTTTTTTTTTTTTTTTTTTTTTACG...................................................................312.000.00-1.001.00------------------
........................................................................................................................................................ATTCTTTTTTTTTTTTTTTTTTTTTTTTATCT..................................................................322.000.001.001.00-------------------
......................................................................................................................................................CCATTCTTTTTTTTTTTTTTTTTTTTTTTTTCTT..................................................................342.000.00-1.001.00------------------
.......................................................................................................................................................CATTCTTTTTTTTTTTTTTTTTTTTTTTTTCTA..................................................................332.000.00--1.001.00-----------------
........................................................................................................................................................ATTCTTTTTTTTTTTTTTTTTTTTTTTTTTATTT................................................................342.000.001.001.00-------------------
.......................................................................................................................................................CATTCTTTTTTTTTTTTTTTTTTTTTAGG......................................................................292.000.00-2.00-------------------
.......................................................................................................................................................CATTCTTTTTTTTTTTTTTTTTTTCTGG.......................................................................282.000.00--1.00-1.00----------------
........................................................................................................................................................ATTCTTTTTTTTTTTTTTTTTTTTTTTTTTATA.................................................................332.000.002.00--------------------
.......................................................................................................................................................CATTCTTTTTTTTTTTTTTTTTTTTTACTG.....................................................................302.000.001.00-1.00------------------
......................................................................................................................................................CCATTCTTTTTTTTTTTTTTTTTTTCTG........................................................................282.000.002.00--------------------
.......................................................................................................................................................CATTCTTTTTTTTTTTTTTTTTTTTTTTTTTATTG................................................................352.000.00--2.00------------------
........................................................................................................................................................ATTCTTTTTTTTTTTTTTTTTTTTTTTTTATTT.................................................................332.000.00-2.00-------------------
.......................................................................................................................................................CATTCTTTTTTTTTTTTTTTTTTTTTTTTTTAAAT................................................................352.000.001.001.00-------------------
.......................................................................................................................................................CATTCTTTTTTTTTTTTTTTTTTTTTTTTATTT..................................................................332.000.001.00-----1.00--------------
........................................................................................................................................................ATTCTTTTTTTTTTTTTTTTTTTTTTTCCGG...................................................................312.000.00----2.00----------------
........................................................................................................................................................ATTCTTTTTTTTTTTTTTTTTTTTTTTTTTAAAC................................................................342.000.001.00-1.00------------------
......................................................................................................................................................CCATTCTTTTTTTTTTTTCG................................................................................202.000.00---2.00-----------------
......................................................................................................................................................CCATTCTTTTTTTTTTTTTTTTTTTTCTTG......................................................................302.000.00--2.00------------------
........................................................................................................................................................ATTCTTTTTTTTTTTTTTTTTTTTTTTTTTAAGG................................................................342.000.001.001.00-------------------
........................................................................................................................................................ATTCTTTTTTTTTTTTTTTTTTTTTTTCAGG...................................................................312.000.00----1.001.00---------------
.......................................................................................................................................................CATTCTTTTTTTTTTTTTTTTTTTTTTTTTTAAT.................................................................342.000.001.001.00-------------------
.......................................................................................................................................................CATTCTTTTTTTTTTTTTTTTTTTTTTTTTACG..................................................................332.000.00-1.00-1.00-----------------
.......................................................................................................................................................CATTCTTTTTTTTTTTTTTTTTTTTTTTATTT...................................................................322.000.001.001.00-------------------
........................................................................................................................................................ATTCTTTTTTTTTTTTTTTTTTTTTTTTATAT..................................................................322.000.00---1.00--1.00--------------
......................................................................................................................................................CCATTCTTTTTTTTTTTAAAG...............................................................................212.000.001.001.00-------------------
.......................................................................................................................................................CATTCTTTTTTTTTTTTTTTTTTTTTTCACC....................................................................312.000.00-1.00--1.00----------------
......................................................................................................................................................CCATTCTTTTTTTTTTTTTTTTTTTTTTTTAAG...................................................................332.000.00--2.00------------------
.......................................................................................................................................................CATTCTTTTTTTTTTTTTTTTTTTTTAAGG.....................................................................302.000.00--1.001.00-----------------
........................................................................................................................................................ATTCTTTTTTTTTTTTTTTTTTTTTTTTTCCC..................................................................322.000.00--1.00-1.00----------------
........................................................................................................................................................ATTCTTTTTTTTTTTTTTTTTTTTTTTTTCTTT.................................................................332.000.00-1.001.00------------------
.......................................................................................................................................................CATTCTTTTTTTTTTTTTTTTTTTCTCG.......................................................................282.000.00--1.001.00-----------------
.......................................................................................................................................................CATTCTTTTTTTTTTTTTTTTTCGG..........................................................................252.000.00-1.001.00------------------
.......................................................................................................................................................CATTCTTTTTTTTTTTTTTTTTTTTTTTTTATCT.................................................................342.000.00-1.00-1.00-----------------
........................................................................................................................................................ATTCTTTTTTTTTTTTTTTTTTTTTTTTTTAATT................................................................342.000.00-2.00-------------------
............................TCCTTATAGTACATCTAAAGCGGG......................................................................................................................................................................................................242.000.00----------2.00----------
........................................................................................................................................................ATTCTTTTTTTTTTTTTTTTTTTTTTTTATAG..................................................................322.000.001.00-1.00------------------
........................................................................................................................................................ATTCTTTTTTTTTTTTTTTTTTTTTTTTTTAACG................................................................342.000.001.00-1.00------------------
........................................................................................................................................................ATTCTTTTTTTTTTTTTTTTTTTTTTTCCC....................................................................302.000.00-1.00--1.00----------------
.......................................................................................................................................................CATTCTTTTTTTTTTTTTTTTTTTCGG........................................................................272.000.001.001.00-------------------
.......................................................................................................................................................CATTCTTTTTTTTTTTTTTTTTTTTTTTCTAG...................................................................322.000.00-1.001.00------------------
........................................................................................................................................................ATTCTTTTTTTTTTTTTTTTTTTTTTTTATCG..................................................................322.000.002.00--------------------
.......................................................................................................................................................CATTCTTTTTTTTTTTTTTTTTTTTTTTAAAA...................................................................322.000.001.001.00-------------------
.......................................................................................................................................................CATTCTTTTTTTTTTTTTTTTTTTTTTAGG.....................................................................302.000.001.001.00-------------------
........................................................................................................................................................ATTCTTTTTTTTTTTTTTTTTTTTTTTTTTATTC................................................................342.000.00-1.001.00------------------
.......................................................................................................................................................CATTCTTTTTTTTTTTTTTTTTTTTTTTCTTG...................................................................322.000.001.00-1.00------------------
.....................CTTCATTTCCTTATAGTACATCTAAAGCG........................................................................................................................................................................................................2912.002.00--------2.00------------
.......................................................................................................................................................CATTCTTTTTTTTTTTTTTTTTTTCTA........................................................................272.000.001.001.00-------------------
.......................................................................................................................................................CATTCTTTTTTTTTTTTTTTTTTATAT........................................................................272.000.002.00--------------------
......................................................................................................................................................CCATTCTTTTTTTTTTTTTCTTG.............................................................................232.000.001.00--1.00-----------------
.......................................................................................................................................................CATTCTTTTTTTTTTTTTTTTTTTCCTT.......................................................................282.000.001.00--1.00-----------------
......................................................................................................................................................CCATTCTTTTTTTTTTTTTTTTTTCAAG........................................................................282.000.00---2.00-----------------
.......................................................................................................................................AATTTACTTTCTTAGCCA.................................................................................................1812.002.00---------2.00-----------
.......................................................................................................................................................CATTCTTTTTTTTTTTTTTTTTTTTTTTTTTCCT.................................................................342.000.00--1.001.00-----------------
.......................................................................................................................................................CATTCTTTTTTTTTTTTTTTTTTCGT.........................................................................261.000.00--1.00------------------
.......................................................................................................................................................CATTCTTTTTTTTTTTTTTTTTTTTTTATAT....................................................................311.000.00--1.00------------------
......................................................................................................................................................CCATTCTTTTTTTTTTTTTTTTTTTAAA........................................................................281.000.001.00--------------------
.......................................................................................................................................................CATTCTTTTTTTTTTTTTTTTTTATAG........................................................................271.000.00--1.00------------------
........................................................................................................................................................ATTCTTTTTTTTTTTTTTTTTTTTTTTTTTGTCTT...............................................................351.000.00--1.00------------------
........................................................................................................................................................ATTCTTTTTTTTTTTTTTTTTTTTTTTCTA....................................................................301.000.00---1.00-----------------
.......................................................................................................................................................CATTCTTTTTTTTTTTTTTTTTTTTTTTTTATTT.................................................................341.000.00-1.00-------------------
........................................................................................................................................................ATTCTTTTTTTTTTTTTTTTTTTTTTTTTAGAG.................................................................331.000.001.00--------------------
.......................................................................................................................................................CATTCTTTTTTTTTTTTTTTTTTTTTTTCCC....................................................................311.000.00--1.00------------------
.......................................................................................................................................................CATTCTTTTTTTTTTTTTTTTTTTTTTTAAAT...................................................................321.000.001.00--------------------
...........................................................................................................................................................CTTTTTTTTTTTTTTTTTTTTTTTTTTGAGCGTG.............................................................341.000.00-1.00-------------------
........................................................................................................................................................ATTCTTTTTTTTTTTTTTTTTTTTTTTTATTT..................................................................321.000.00--1.00------------------
........................................................................................................................................................ATTCTTTTTTTTTTTTTTTTTTTTTTTTTTATAT................................................................341.000.00--1.00------------------
.......................................................................................................................................................CATTCTTTTTTTTTTTTTTTTTTTTTTTTTCATG.................................................................341.000.001.00--------------------
.......................................................................................................................................................CATTCTTTTTTTTTTTTTTTTTTTTTTTTTTATC.................................................................341.000.00-1.00-------------------
......................................................................................................................................................CCATTCTTTTTTTTTTTTTTTTTTTACTG.......................................................................291.000.00--1.00------------------
.......................................................................................................................................................CATTCTTTTTTTTTTTTTTTTTTTTTTTCCAG...................................................................321.000.00--1.00------------------
......................................................................................................................................................CCATTCTTTTTTTTTTTTTTTTTTTTTTCAT.....................................................................311.000.00-1.00-------------------
.........................................................................................................................................................................................................TCACCCAGGCTGGGGTGCAGCAGCAC.......................2611.001.00-----1.00---------------
.......................................................................................................................................................CATTCTTTTTTTTTTTTTTTTTTTTTTTTCTTC..................................................................331.000.001.00--------------------
......................................................................................................................................................CCATTCTTTTTTTTTTTTTTTTTTTTAACA......................................................................301.000.00----1.00----------------
.CAGCATCAAATTTTAAATCT.....................................................................................................................................................................................................................................201.000.00------------1.00--------
.......................................................................................................................................................CATTCTTTTTTTTTTTTTTTTTTTTTTTTTAATG.................................................................341.000.00---1.00-----------------
.......................................................................................................................................................CATTCTTTTTTTTTTTTTTTTTTTTTTTTTTATA.................................................................341.000.00--1.00------------------
......................................................................................................................................................CCATTCTTTTTTTTTTTTTTTTTTTTTTTTCCGA..................................................................341.000.001.00--------------------
.......................................................................................................................................................CATTCTTTTTTTTTTTTTTTTTTTTTTTTTTGTT.................................................................341.000.00-1.00-------------------
.......................................................................................................................................................................................................TGTCACCCAGGCTGGGGTGCAGGGCG.........................261.000.00-----1.00---------------
........................................................................................................................................................ATTCTTTTTTTTTTTTTTTTTTTTTTTTTTGTTGT...............................................................351.000.00-1.00-------------------
.......................................................................................................................................................CATTCTTTTTTTTTTTTTTTTTTTTTTTCTCG...................................................................321.000.00-1.00-------------------
........................................................................................................................................................ATTCTTTTTTTTTTTTTTTTTTTTTTTTTAATC.................................................................331.000.00---1.00-----------------
..........................................................................................................................................................TCTTTTTTTTTTTTTTTTTTTTTTTTTTGATAAT..............................................................341.000.00-1.00-------------------
......................................................................................................................................................CCATTCTTTTTTTTTTTTTTTTTCTG..........................................................................261.000.00--1.00------------------
........................................................................................................................................................ATTCTTTTTTTTTTTTTTTTTTTTTTTCCTC...................................................................311.000.00----1.00----------------
.......................................................................................................................................................CATTCTTTTTTTTTTTTTTTTTTCATT........................................................................271.000.001.00--------------------
.....................................................................................................................................................GCCATTCTTTTTTTTTTTTTTTTTTTTTAG.......................................................................301.000.00------1.00--------------
.......................................................................................................................................................CATTCTTTTTTTTTTTTTCCAT.............................................................................221.000.00---1.00-----------------
........................................................................................................................................................ATTCTTTTTTTTTTTTTTTTTTTTTTTTATCA..................................................................321.000.001.00--------------------
.......................................................................................................................................................CATTCTTTTTTTTTTTTTTTTTTTTTAACT.....................................................................301.000.001.00--------------------
........................................................................................................................................................ATTCTTTTTTTTTTTTTTTTTTTTTTTTTTAAGT................................................................341.000.00-1.00-------------------
.......................................................................................................................................................CATTCTTTTTTTTTTTTTTTTTTCATG........................................................................271.000.00--1.00------------------
......................................................................................................................................................CCATTCTTTTTTTTTTTTTTTTTTTTTTTTTAT...................................................................331.000.00---1.00-----------------
.......................................................................................................................................................CATTCTTTTTTTTTTTTTTTTTTCCCG........................................................................271.000.00-1.00-------------------
......................................................................................................................................................CCATTCTTTTTTTTTTTAAG................................................................................201.000.00-1.00-------------------
.........................................................................................................................................................TTCTTTTTTTTTTTTTTTTTTTTTTTTTTGCATA...............................................................341.000.00-1.00-------------------
......................................................................................................................................................CCATTCTTTTTTTTTTTTTTTTTTTTTTTTTCTG..................................................................341.000.001.00--------------------
.........................................................................................................................................................................................ACAGAGTCTCGCTCTGTCACCCAGGGGAG....................................291.000.00----1.00----------------
.......................................................................................................................................................CATTCTTTTTTTTTTTTTTTTTTTTTTTTTCCC..................................................................331.000.00--1.00------------------
.......................................................................................................................................................CATTCTTTTTTTTTTTTTTTTTTTTTTTTAACA..................................................................331.000.001.00--------------------
........................................................................................................................................................ATTCTTTTTTTTTTTTTTTTTTTTTTTTTAAAA.................................................................331.000.00--1.00------------------
.......................................................................................................................................................CATTCTTTTTTTTTTTTTTTTTTCAT.........................................................................261.000.00---1.00-----------------
........................................................................................................................................................ATTCTTTTTTTTTTTTTTTTTTTTTTTTTACTG.................................................................331.000.00--1.00------------------
.................CAGTCTTCATTTCCTTATAG.....................................................................................................................................................................................................................2011.001.00---------------1.00-----
..........................................................................................................................................................TCTTTTTTTTTTTTTTTTTTTTTTTTTTGAGAAAT.............................................................351.000.00-1.00-------------------
.......................................................................................................................................................CATTCTTTTTTTTTTTTTTTTTTTCCAG.......................................................................281.000.001.00--------------------
.......................................................................................................................................................CATTCTTTTTTTTTTTTTTTTTTTTTTTCAAG...................................................................321.000.00--1.00------------------
.......................................................................................................................................................CATTCTTTTTTTTTTTTTTTTTTTTTTTTTTGTTG................................................................351.000.00--1.00------------------
.......................................................................................................................................................CATTCTTTTTTTTTTTTTTTTTTTTTTTTTATC..................................................................331.000.00---1.00-----------------
.......................................................................................................................................................CATTCTTTTTTTTTTTTTTTTTTTTTTTTTTATTT................................................................351.000.00--1.00------------------
........................................................................................................................................................ATTCTTTTTTTTTTTTTTTTTTTTTTTTTTGTTAG...............................................................351.000.001.00--------------------
.......................................................................................................................................................CATTCTTTTTTTTTTTTTTTTTTTTTTTTTCTAG.................................................................341.000.00---1.00-----------------
.......................................................................................................................................................CATTCTTTTTTTTTTTTTTTTTTTTTTTTTTCG..................................................................331.000.00-1.00-------------------
......................................................................................................................................................CCATTCTTTTTTTTTTTTTTTTTTTTTTTTAAAG..................................................................341.000.001.00--------------------
......................................................................................................................................................CCATTCTTTTTTTTTTTTTTTTTTTTCTC.......................................................................291.000.001.00--------------------
........................................................................................................................................................ATTCTTTTTTTTTTTTTTTTTTTTTTTTTTGTGG................................................................341.000.001.00--------------------
......................................................................................................................................................CCATTCTTTTTTTTTTTTTTTTTTAT..........................................................................261.000.001.00--------------------
......................................................................................................................................................CCATTCTTTTTTTTTTTTTTTTTTTTGGG.......................................................................291.000.001.00--------------------
......................................................................................................................................................CCATTCTTTTTTTTTTAAG.................................................................................191.000.00---1.00-----------------
.......................................................................................................................................................CATTCTTTTTTTTTTTTTTTTTTTCCAT.......................................................................281.000.001.00--------------------
.......................................................................................................................................................CATTCTTTTTTTTTTTTTTTTTTTTTTTTTATTG.................................................................341.000.001.00--------------------
.......................................................................................................................................................CATTCTTTTTTTTTTTTTTTTTTTTTAAAA.....................................................................301.000.00--1.00------------------
........................................................................................................................................................ATTCTTTTTTTTTTTTTTTTTTTTTTTTAGTT..................................................................321.000.00-----1.00---------------
.......................................................................................................................................................CATTCTTTTTTTTTTTTTACG..............................................................................211.000.001.00--------------------
............................................................................................GATTTGTTTTTTGTTTCGAG..........................................................................................................................................201.000.00----1.00----------------
........................................................................................................................................................ATTCTTTTTTTTTTTTTTTTTTTTTTTTTCTAT.................................................................331.000.00--1.00------------------
.......................................................................................................................................................CATTCTTTTTTTTTTTTTTTTTTTTTTTTTCGG..................................................................331.000.001.00--------------------
........................................................................................................................................................ATTCTTTTTTTTTTTTTTTTTTTTTTTTTCGG..................................................................321.000.00----1.00----------------
......................................................................................................................................................CCATTCTTTTTTTTTTTTTTTTTTTTTTTTTTAAG.................................................................351.000.00---1.00-----------------
..........................................................................................................................................................TCTTTTTTTTTTTTTTTTTTTTTTTTTTGATTTG..............................................................341.000.001.00--------------------
.......................................................................................................................................................CATTCTTTTTTTTTTTTTTTTTTCTAG........................................................................271.000.00--1.00------------------
........................................................................................................................................................ATTCTTTTTTTTTTTTTTTTTTTTTTTTTTGAAG................................................................341.000.001.00--------------------
.......................................................................................................................................................CATTCTTTTTTTTTTTTTTTTTTACAG........................................................................271.000.001.00--------------------
......................................................................................................................................................CCATTCTTTTTTTTTTTTTTTTTCAAA.........................................................................271.000.00-1.00-------------------
......................................................................................................................................................CCATTCTTTTTTTTTTTTTTTTTTTTTTAAT.....................................................................311.000.001.00--------------------
........................................................................................................................................................ATTCTTTTTTTTTTTTTTTTTTTTTTTCGAT...................................................................311.000.00-----1.00---------------
....................................................................................................................................................AGCCATTCTTTTTTTTTTTTTCTGC.............................................................................251.000.00----1.00----------------
.......................................................................................................................................................CATTCTTTTTTTTTTTTTTTTTCTA..........................................................................251.000.00-1.00-------------------
......................................................................................................................................................CCATTCTTTTTTTTTTTTTTTTTTTTCTTT......................................................................301.000.001.00--------------------
.......................................................................................................................................................CATTCTTTTTTTTTTTTTTTTTTTTTTTTTCTAT.................................................................341.000.00-1.00-------------------
........................................................................................................................................................ATTCTTTTTTTTTTTTTTTTTTTTTTTTTCAAT.................................................................331.000.001.00--------------------
....................................................................................................................................................AGCCATTCTTTTTTTTTTTTTTTTCTAG..........................................................................281.000.00----1.00----------------
........................................................................................................................................................ATTCTTTTTTTTTTTTTTTTTTTTTTTTTTAATA................................................................341.000.001.00--------------------
......................................................................................................................................................CCATTCTTTTTTTTTTTTTTTTTTTATT........................................................................281.000.001.00--------------------
......................................................................................................................................................CCATTCTTTTTTTTTTTTTTTTTTTTAT........................................................................281.000.00--1.00------------------
.......................................................................................................................................................CATTCTTTTTTTTTTTTTTTTTTTTTTCTA.....................................................................301.000.00--1.00------------------
.......................................................................................................................................................CATTCTTTTTTTTTTTTTTTTTTTTTTAAGG....................................................................311.000.001.00--------------------
.......................................................................................................................................................CATTCTTTTTTTTTTTTTTTTTCCGG.........................................................................261.000.00--1.00------------------
........................................................................................................................................................ATTCTTTTTTTTTTTTTTTTTTTTTTTTTCATG.................................................................331.000.001.00--------------------
......................................................................................................................................................CCATTCTTTTTTTTTTTTTTTTTTTAT.........................................................................271.000.001.00--------------------
.......................................................................................................................................................CATTCTTTTTTTTTTTTTTTTTTTTTTTAGTG...................................................................321.000.00-1.00-------------------
..............TAACAGTCTTCATTTCCTTATAG.....................................................................................................................................................................................................................2311.001.00----------------1.00----
........................................................................................................................................................ATTCTTTTTTTTTTTTTTTTTTTTTTTTTTGTGTT...............................................................351.000.00---1.00-----------------
......................................................................................................................................................CCATTCTTTTTTTTTTTTTTTTTTTATTG.......................................................................291.000.00-1.00-------------------
........................................................................................................................................................ATTCTTTTTTTTTTTTTTTTTTTTTTTTAACA..................................................................321.000.001.00--------------------
.........................................................................................................................................................................................................TCACCCAGGCTGGGGTGCAGCGGG.........................241.000.00----1.00----------------
.......................................................................................................................................................CATTCTTTTTTTTTTTTTAGG..............................................................................211.000.001.00--------------------
.......................................................................................................................................................CATTCTTTTTTTTTTTTTTTTTCTCG.........................................................................261.000.00---1.00-----------------
........................................................................................................................................................ATTCTTTTTTTTTTTTTTTTTTTTTTTTTTAAAA................................................................341.000.00-1.00-------------------
.......................................................................................................................................................CATTCTTTTTTTTTTTTTTTTTTTTTTTTTTGGGG................................................................351.000.001.00--------------------
.......................................................................................................................................................CATTCTTTTTTTTTTTTTCTCG.............................................................................221.000.00--1.00------------------
.......................................................................................................................................................CATTCTTTTTTTTTTTTTTTTTTTTTTTTTCCGG.................................................................341.000.00--1.00------------------
.......................................................................................................................................................CATTCTTTTTTTTTTTTTTTTTTTTTTTTAAAC..................................................................331.000.00------1.00--------------
........................................................................................................................................................ATTCTTTTTTTTTTTTTTTTTTTTTTTTAACT..................................................................321.000.001.00--------------------
......................................................................................................................................................CCATTCTTTTTTTTTTTTTTTTTTTAACA.......................................................................291.000.00-1.00-------------------
......................................................................................................................................................CCATTCTTTTTTTTTTTTTTTTTTTTTTTTTATT..................................................................341.000.00-1.00-------------------
......................................................................................................................................................CCATTCTTTTTTTTTTTTTTTTTTTTTATG......................................................................301.000.001.00--------------------
........................................................................................................................................................ATTCTTTTTTTTTTTTTTTTTTTTTTTTACTT..................................................................321.000.00---1.00-----------------
.......................................................................................................................................................CATTCTTTTTTTTTTTTTTTTTTTTTTTAACC...................................................................321.000.00----1.00----------------
..........................................................................................................................................................TCTTTTTTTTTTTTTTTTTTTTTTTTTTGATCT...............................................................331.000.001.00--------------------
.......................................................................................................................................................CATTCTTTTTTTTTTTTTTTTTTAAGG........................................................................271.000.00-1.00-------------------
........................................................................................................................................................ATTCTTTTTTTTTTTTTTTTTTTTTTTTAGTG..................................................................321.000.00----1.00----------------
.......................................................................................................................................................CATTCTTTTTTTTTTTTTTTTTTTTTTTTTTCCC.................................................................341.000.00-1.00-------------------
.......................................................................................................................................................CATTCTTTTTTTTTTTTTTTTTTTTTTTTTTAAC.................................................................341.000.00--1.00------------------
......................................................................................................................................................CCATTCTTTTTTTTTTTTTTTCAAG...........................................................................251.000.00---1.00-----------------
......................................................................................................................................................................................................................................CTCGGCTCTCTGCAGCTCTG201.000.00-------------------1.00-
.......................................................................................................................................................CATTCTTTTTTTTTTTTTTTTTTTTTTTTTTAAAA................................................................351.000.00-1.00-------------------
......................................................................................................................................................CCATTCTTTTTTTTTTTTTTTTTTTTTTCTAG....................................................................321.000.00---1.00-----------------
......................................................................................................................................................CCATTCTTTTTTTTTTTTTTTTTTTATG........................................................................281.000.00--1.00------------------
......................................................................................................................................................CCATTCTTTTTTTTTTTTTTTTTCTCG.........................................................................271.000.00--1.00------------------
........................................................................................................................................................ATTCTTTTTTTTTTTTTTTTTTTTTTTTTACCG.................................................................331.000.001.00--------------------
.......................................................................................................................................................CATTCTTTTTTTTTTTTTTTTTTTTTTTAAAC...................................................................321.000.00---1.00-----------------
.......................................................................................................................................................CATTCTTTTTTTTTTTTTTTTTTTTTTTTTTCAA.................................................................341.000.00-1.00-------------------
.......................................................................................................................................................CATTCTTTTTTTTTTTTTTTTTTTTTTTTACCT..................................................................331.000.00-1.00-------------------
......................................................................................................................................................CCATTCTTTTTTTTTTTTTTCCAG............................................................................241.000.00--1.00------------------
.......................................................................................................................................................CATTCTTTTTTTTTTTTTATAG.............................................................................221.000.001.00--------------------
........................................................................................................................................................ATTCTTTTTTTTTTTTTTTTTTTTTTTCTCG...................................................................311.000.00---1.00-----------------
........................................................................................................................................................ATTCTTTTTTTTTTTTTTTTTTTTTTTCCCC...................................................................311.000.00----1.00----------------
............................................................................................GATTTGTTTTTTGTTTTTAG..........................................................................................................................................201.000.00-----1.00---------------
........................................................................................................................................................ATTCTTTTTTTTTTTTTTTTTTTTTTTTATA...................................................................311.000.001.00--------------------
.......................................................................................................................................................CATTCTTTTTTTTTTTTTTTTTTTTTTTTTTCATG................................................................351.000.001.00--------------------
.......................................................................................................................................................CATTCTTTTTTTTTTTTTTTTTTTTTTTTTTAGG.................................................................341.000.001.00--------------------
.......................................................................................................................................................CATTCTTTTTTTTTTTTTTTTTTTCGGG.......................................................................281.000.00------1.00--------------
........................................................................................................................................................ATTCTTTTTTTTTTTTTTTTTTTTTTTTTTAAC.................................................................331.000.001.00--------------------
......................................................................................................................................................CCATTCTTTTTTTTTTTTTTTTTTTTTTCTCG....................................................................321.000.00---1.00-----------------
.......................................................................................................................................................CATTCTTTTTTTTTTTTTTTTTTTTTTTAATG...................................................................321.000.00-1.00-------------------
.......................................................................................................................................................CATTCTTTTTTTTTTTTTTTTTTTTTTTAGG....................................................................311.000.00-1.00-------------------
.......................................................................................................................................................CATTCTTTTTTTTTTTTTTTTTTTTTTTTATA...................................................................321.000.001.00--------------------
........................................................................................................................................................ATTCTTTTTTTTTTTTTTTTTTTTTTTTTTGGCTT...............................................................351.000.00-1.00-------------------
..........................................................................................................................................................................................................CACCCAGGCTGGGGTGCAGCAGA.........................231.000.00------------------1.00--
.......................................................................................................................................................CATTCTTTTTTTTTTTTTTTTTTATTA........................................................................271.000.001.00--------------------
........................................................................................................................................................ATTCTTTTTTTTTTTTTTTTTTTTTTTTTACCC.................................................................331.000.00----1.00----------------
......................................................................................................................................................CCATTCTTTTTTTTTTTTTTTTTTTTCAAA......................................................................301.000.00--1.00------------------
......................................................................................................................................................CCATTCTTTTTTTTTTTTTTTTTTTTTAGG......................................................................301.000.00-1.00-------------------
.......................................................................................................................................................CATTCTTTTTTTTTTTTTACTG.............................................................................221.000.001.00--------------------
...............................................................................TTAATGGGCAATTGATTTGTTTTTTG.................................................................................................................................................2611.001.00-------------1.00-------
......................................................................................................................................................CCATTCTTTTTTTTTTTTTCTTA.............................................................................231.000.00---1.00-----------------
.......................................................................................................................................................CATTCTTTTTTTTTTTTTTTTTTTTTTTATA....................................................................311.000.001.00--------------------
.......................................................................................................................................................CATTCTTTTTTTTTTTTTTTTTTTTTTAAAT....................................................................311.000.00-1.00-------------------
........................................................................................................................................................ATTCTTTTTTTTTTTTTTTTTTTTTTTCCAC...................................................................311.000.00--1.00------------------
........................................................................................................................................................ATTCTTTTTTTTTTTTTTTTTTTTTTTTTTACTG................................................................341.000.00--1.00------------------
.......................................................................................................................................................CATTCTTTTTTTTTTTTTTTTTTTTTTTTTTGGTG................................................................351.000.00---1.00-----------------
......................................................................................................................................................CCATTCTTTTTTTTTTTTTTTTTTTTCCCG......................................................................301.000.00-1.00-------------------
.......................................................................................................................................................CATTCTTTTTTTTTTTTTTTTTTTTTTAAAA....................................................................311.000.00-1.00-------------------
......................................................................................................................................................CCATTCTTTTTTTTTTTTTTTTTTTTTTTTTTTCT.................................................................351.000.001.00--------------------
.......................................................................................................................................................CATTCTTTTTTTTTTTTTTTTTTTTTTTTTTATAG................................................................351.000.00---1.00-----------------
........................................................................................................................................................ATTCTTTTTTTTTTTTTTTTTTTTTTTTTCAAC.................................................................331.000.00--1.00------------------
......................................................................................................................................................CCATTCTTTTTTTTTTTTTTTTTTCAG.........................................................................271.000.00---1.00-----------------
.......................................................................................................................................................CATTCTTTTTTTTTTTTTCCCG.............................................................................221.000.00--1.00------------------
........................................................................................................................................................ATTCTTTTTTTTTTTTTTTTTTTTTTTTTTAACC................................................................341.000.00-1.00-------------------
.......................................................................................................................................................CATTCTTTTTTTTTTTTTTTTTTTTTTAAC.....................................................................301.000.00---1.00-----------------
.......................................................................................................................................................CATTCTTTTTTTTTTTTTTTTTTTTTTTTCATG..................................................................331.000.001.00--------------------
......................................................................................................................................................CCATTCTTTTTTTTTTTTTTTTTTTTAAAG......................................................................301.000.00-1.00-------------------
.......................................................................................................................................................CATTCTTTTTTTTTTTTTTTTTTTTTACG......................................................................291.000.00--1.00------------------
...............................................................................................................................................................................................................AGGCTGGGGTGCAGCTGCG........................191.000.00-----1.00---------------
......................................................................................................................................................CCATTCTTTTTTTTTTTTTTTTTTTTTTTTTCT...................................................................331.000.00-1.00-------------------
.......................................................................................................................................................CATTCTTTTTTTTTTTTTTTTTTTTTTTATAG...................................................................321.000.001.00--------------------
..................................................................................................................................................................TTTTTTTTTTTTTTTTTTTTGAGACAGAGGGAG.......................................................331.000.00----1.00----------------
.......................................................................................................................................................CATTCTTTTTTTTTTTTTTTTTTTTTTTTATTA..................................................................331.000.001.00--------------------
........................................................................................................................................................ATTCTTTTTTTTTTTTTTTTTTTTTTTTAGCG..................................................................321.000.00----1.00----------------
.......................................................................................................................................................CATTCTTTTTTTTTTTTTTTTTTTTTTCAAG....................................................................311.000.00--1.00------------------
.............................................................................................................................................................................................AGTCTCGCTCTGTCACCCAGGCTGGGCCCC...............................301.000.00----1.00----------------
........................................................................................................................................................ATTCTTTTTTTTTTTTTTTTTTTTTTTTACAT..................................................................321.000.00--1.00------------------
........................................................................................................................................................ATTCTTTTTTTTTTTTTTTTTTTTTTTTTAAGC.................................................................331.000.00---1.00-----------------
.......................................................................................................................................................CATTCTTTTTTTTTTTTTTTTTTCTA.........................................................................261.000.001.00--------------------
......................................................................................................................................................CCATTCTTTTTTTTTTTTTTTTTTTTATTT......................................................................301.000.00-1.00-------------------
.......................................................................................................................................................CATTCTTTTTTTTTTTTTTTTTTAACG........................................................................271.000.00---1.00-----------------
......................................................................................................................................................CCATTCTTTTTTTTTTTTTTTTTTTTTTTAAT....................................................................321.000.00-1.00-------------------

Antisense strand
CCAGCATCAAATTTTAACAGTCTTCATTTCCTTATAGTACATCTAAAGCGGTAAGAATTTTATATAACTAGAACATTTATTAATGGGCAATTGATTTGTTTTTTGTTTTTAATTGTGGTAAAATCCACATAACAAAATTTACTTTCTTAGCCATTCTTTTTTTTTTTTTTTTTTTTTTTTTTGAGACAGAGTCTCGCTCTGTCACCCAGGCTGGGGTGCAGCAGCACAATCTCGGCTCTCTGCAGCCTCG
............................................................................................((...((.(((((((......(((((......))))).)))))))...))..))........................................................................................................
.......................................................................................88......................................................................................176........................................................................
SizePerfect hitTotal NormPerfect NormSRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR390725(GSM850204)
small rna immunoprecipitated. (cell line)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		SRR040018(GSM532903)
G701N. (cervix)		SRR037937(GSM510475)
293cand2. (cell line)		GSM359178(GSM359178)
hela_nucl_t. (hela)		SRR390723(GSM850202)
total small RNA. (cell line)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189786SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)
.......................................................................................................................................................CATTCTTTTTTTTTTTTTTTTTTTTTTTC...................................................................... 292.000.00-------2.00-------------
..............................................................................................................................................................................................GTCTCGCTCTGTCACCCAGGCTGGGGTATCG............................. 311.000.00-----1.00---------------
.........................................................................................................................................................................................................TCACCCAGGCTGGGGTGCAGAT........................... 221.000.00-----------------1.00---
......................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAGAATGG....................................................................... 2901.001.00-------1.00-------------
.................................................................................................................................................................................................TCGCTCTGTCACCCAGGCTGGGGTAGG.............................. 271.000.00----1.00----------------
........................................................................................................................................................................................................ATTGTGCTGCTGCACCCCAGCCTGGGTGAC.................... 3011.001.00----1.00----------------
.......................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAGAATG...................................................................... 2901.001.00-------1.00-------------
.............................................................................................................................................................................................AGTCTCGCTCTGTCACCCAGGCTGGGGCC................................ 291.000.00----1.00----------------
..............................................................................................................................................................................................GTCTCGCTCTGTCACCCAGGCTGGGGTGCACAC........................... 331.000.00-----1.00---------------
............................................................................................................................................................................................................CCCAGGCTGGGGTGCAGCAGCACGG..................... 251.000.00-----1.00---------------
........................................................................................................................................................................................................................................CGGCTCTCTGCAGCCTCGA 191.000.00-----1.00---------------
.......................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAGAATG....................................................................... 2801.001.00-------1.00-------------
................................................................................................................................................................................................................................CACAATCTCGGCTCTACAC....... 191.000.00-----------1.00---------
......................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAGAATGG........................................................................ 2801.001.00--------------1.00------
...........................................................................................................................................................................................................................................CTCTCTGCAGCCTCGTAAT 191.000.00--------------------1.00
.............................................................................................................................................................................................................CCAGGCTGGGGTGCAGCAGCACAATC................... 261.000.00-----1.00---------------
......................................................................................................................................................................................................TGCTGCTGCACCCCAGCCTGGGTGACAG........................ 2830.330.33----0.33----------------