ID: uc001dph.2_intron_5_0_chr1_93581176_f.3p
GENE: (6)
chr1:93583702-93583951+


(1)
B-CELL
(2)
BREAST
(14)
CELL-LINE
(1)
HEART
(3)
LIVER
(4)
OTHER
(1)
SKIN
(1)
XRN.ip

Sense strand
AGAGAGAAGAGGGATGAAATAGCTGATACTATAAGCCTTTTTGGGAAAGGAAATATTTACAGTAAGTATAGTAGAAATGTGATGCTTTAATTAGAACAGTATTGTGGATTAGGCCACTTTTTTTTTTTTTTTTTTTAAAGAAATGAACCTTTCCCTTAAGACAGGAATTTTAGTGTTAACTTTTTTGTTTTTTTTAATAGCTGGTATTTGAAGATGCTACAGTGCTGCAAATGTAAGCAGTGGTTTCATG
..............................................................................................................(((......(((.(((((((......))))))).)))......))).((((((((((....(((....)))))))))))))...........................................................
.............................................................................................................110.......................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR037941(GSM510479)
293DroshaTN. (cell line)
SRR189782SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)
SRR189784SRR037936(GSM510474)
293cand1. (cell line)
SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)
SRR189787SRR037937(GSM510475)
293cand2. (cell line)
SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)
TAX577739(Rovira)
total RNA. (breast)
SRR189786SRR037934(GSM510472)
293cand4_rep3. (cell line)
SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)
SRR191591(GSM715701)
53genomic small RNA (size selected RNA from t. (breast)
SRR033728(GSM497073)
MALT (MALT413). (B cell)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR444060(SRX128908)
Sample 18cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
...................................................................................................................ACTTTTTTTTTTTTTTTTTTTAATCAG............................................................................................................27420.000.00217.00185.0010.008.00----------------------
..................................................................................................................CACTTTTTTTTTTTTTTTTTTTAAAAG.............................................................................................................27114.000.0047.0048.008.009.00-2.00--------------------
...................................................................................................................ACTTTTTTTTTTTTTTTTTTTAATCAT............................................................................................................2744.000.0016.0026.00-2.00----------------------
...................................................................................................................ACTTTTTTTTTTTTTTTTTTTATCAG.............................................................................................................2643.000.0015.0018.005.004.00-1.00--------------------
...................................................................................................................ACTTTTTTTTTTTTTTTTTTTAAATAT............................................................................................................2743.000.0025.0016.001.001.00----------------------
..................................................................................................................CACTTTTTTTTTTTTTTTTTTTAAAA..............................................................................................................2638.000.0012.0017.005.004.00----------------------
...................................................................................................................ACTTTTTTTTTTTTTTTTTTTAAAAG.............................................................................................................2630.000.0012.0011.003.001.002.001.00--------------------
...................................................................................................................ACTTTTTTTTTTTTTTTTTTTAAAAAAG...........................................................................................................2830.000.0017.008.002.002.00-1.00--------------------
...................................................................................................................ACTTTTTTTTTTTTTTTTTTTAACCAG............................................................................................................2727.000.0013.0013.001.00-----------------------
.................................................................................................................................................................................AACTTTTTTGTTTTTTTAAG.....................................................2026.000.004.006.00--9.006.001.00-------------------
...................................................................................................................ACTTTTTTTTTTTTTTTTTTTAATTAG............................................................................................................2721.000.0016.003.001.001.00----------------------
..................................................................................................................CACTTTTTTTTTTTTTTTTTTTAAATG.............................................................................................................2720.000.0014.006.00------------------------
...................................................................................................................ACTTTTTTTTTTTTTTTTTTTAATCTG............................................................................................................2713.000.003.004.002.003.00-1.00--------------------
...................................................................................................................ACTTTTTTTTTTTTTTTTTTTAAAACAG...........................................................................................................2812.000.006.005.00-1.00----------------------
...................................................................................................................ACTTTTTTTTTTTTTTTTTTTAAATCAG...........................................................................................................2811.000.004.002.003.001.00-1.00--------------------
..................................................................................................................CACTTTTTTTTTTTTTTTTTTTAATG..............................................................................................................2610.000.004.005.001.00-----------------------
...................................................................................................................ACTTTTTTTTTTTTTTTTTTTAAAAAT............................................................................................................2710.000.004.003.002.001.00----------------------
...................................................................................................................ACTTTTTTTTTTTTTTTTTTTAATCCG............................................................................................................279.000.005.004.00------------------------
...................................................................................................................ACTTTTTTTTTTTTTTTTTTTAAAATAG...........................................................................................................289.000.007.002.00------------------------
...................................................................................................................ACTTTTTTTTTTTTTTTTTTTAATAAT............................................................................................................279.000.003.006.00------------------------
...................................................................................................................ACTTTTTTTTTTTTTTTTTTTAAATTAG...........................................................................................................289.000.003.00-2.004.00----------------------
...................................................................................................................ACTTTTTTTTTTTTTTTTTTTAACTG.............................................................................................................268.000.002.003.001.00-1.001.00--------------------
...................................................................................................................ACTTTTTTTTTTTTTTTTTTTATTTG.............................................................................................................268.000.002.004.00-2.00----------------------
...................................................................................................................ACTTTTTTTTTTTTTTTTTTTAATCAA............................................................................................................277.000.004.003.00------------------------
...................................................................................................................ACTTTTTTTTTTTTTTTTTTTAATCGG............................................................................................................277.000.005.002.00------------------------
...................................................................................................................ACTTTTTTTTTTTTTTTTTTTAAAATG............................................................................................................276.000.002.001.001.00-1.001.00--------------------
...................................................................................................................ACTTTTTTTTTTTTTTTTTTTAAATTG............................................................................................................276.000.003.003.00------------------------
...................................................................................................................ACTTTTTTTTTTTTTTTTTTTAATCA.............................................................................................................266.000.003.003.00------------------------
...................................................................................................................ACTTTTTTTTTTTTTTTTTTTATTAG.............................................................................................................266.000.003.002.001.00-----------------------
...................................................................................................................ACTTTTTTTTTTTTTTTTTTTAAAAT.............................................................................................................266.000.001.002.002.001.00----------------------
...................................................................................................................ACTTTTTTTTTTTTTTTTTTTATTAT.............................................................................................................266.000.004.002.00------------------------
..................................................................................................................CACTTTTTTTTTTTTTTTTTTTAAAAT.............................................................................................................276.000.001.001.003.00--1.00--------------------
.................................................................................................................................................................................AACTTTTTTGTTTTTTCAAG.....................................................205.000.00----1.003.001.00-------------------
...................................................................................................................................................................................................................................CAAATGTAAGCAGTGGTT.....1815.005.00-------3.00-1.001.00---------------
...................................................................................................................ACTTTTTTTTTTTTTTTTTTTAAAGG.............................................................................................................265.000.001.00-2.001.00-1.00--------------------
..................................................................................................................CACTTTTTTTTTTTTTTTTTTTAAAGG.............................................................................................................275.000.004.001.00------------------------
..................................................................................................................CACTTTTTTTTTTTTTTTTTTTATAG..............................................................................................................264.000.001.002.00-1.00----------------------
...................................................................................................................ACTTTTTTTTTTTTTTTTTTTAAATAAG...........................................................................................................284.000.001.003.00------------------------
..................................................................................................................CACTTTTTTTTTTTTTTTTTTTAAAAA.............................................................................................................274.000.002.002.00------------------------
...................................................................................................................ACTTTTTTTTTTTTTTTTTTTAACCCG............................................................................................................274.000.001.003.00------------------------
..................................................................................................................CACTTTTTTTTTTTTTTTTTTTAACG..............................................................................................................263.000.00-2.00-1.00----------------------
...................................................................................................................ACTTTTTTTTTTTTTTTTTTTATTGC.............................................................................................................263.000.00----1.00-2.00-------------------
..................................................................................................................CACTTTTTTTTTTTTTTTTTTTAAAAGG............................................................................................................283.000.001.002.00------------------------
...................................................................................................................ACTTTTTTTTTTTTTTTTTTTAATTGG............................................................................................................273.000.002.001.00------------------------
...................................................................................................................ACTTTTTTTTTTTTTTTTTTTAACCGG............................................................................................................273.000.002.00---1.00---------------------
..................................................................................................................CACTTTTTTTTTTTTTTTTTTTAAACG.............................................................................................................273.000.003.00-------------------------
...................................................................................................................ACTTTTTTTTTTTTTTTTTTTAAATCG............................................................................................................273.000.001.002.00------------------------
..................................................................................................................CACTTTTTTTTTTTTTTTTTTTAAAAAG............................................................................................................283.000.001.002.00------------------------
.................................................................................................................CCACTTTTTTTTTTTTTTTTTTTAAT...............................................................................................................263.000.00-3.00------------------------
...........................................................................................................ATTAGGCCACTTTTTTTTTTTTTTTTTTTTT................................................................................................................313.000.00----2.00-1.00-------------------
.................................................................................................................CCACTTTTTTTTTTTTTTTTTTTAAAG..............................................................................................................2742.502.500.500.250.751.00----------------------
...................................................................................................................ACTTTTTTTTTTTTTTTTTTTAAATCGG...........................................................................................................282.000.00-2.00------------------------
..................................................................................................................CACTTTTTTTTTTTTTTTTTTTACG...............................................................................................................252.000.002.00-------------------------
...................................................................................................................ACTTTTTTTTTTTTTTTTTTTAAATAGT...........................................................................................................282.000.00-2.00------------------------
...................................................................................................................ACTTTTTTTTTTTTTTTTTTTAAAATT............................................................................................................272.000.00-2.00------------------------
..................................................................................................................CACTTTTTTTTTTTTTTTTTTTAACAT.............................................................................................................272.000.001.001.00------------------------
...................................................................................................................ACTTTTTTTTTTTTTTTTTTTATATG.............................................................................................................262.000.00-1.001.00-----------------------
...................................................................................................................ACTTTTTTTTTTTTTTTTTTTAAATCTG...........................................................................................................282.000.001.00-1.00-----------------------
...................................................................................................................ACTTTTTTTTTTTTTTTTTTTATCAA.............................................................................................................262.000.00-2.00------------------------
...................................................................................................................ACTTTTTTTTTTTTTTTTTTTAAATTAT...........................................................................................................282.000.002.00-------------------------
...................................................................................................................ACTTTTTTTTTTTTTTTTTTTAAAAGAG...........................................................................................................282.000.00----1.00-1.00-------------------
...................................................................................................................ACTTTTTTTTTTTTTTTTTTTATTA..............................................................................................................252.000.00-1.001.00-----------------------
..................................................................................................................CACTTTTTTTTTTTTTTTTTTTATAAG.............................................................................................................272.000.00-1.00-1.00----------------------
...................................................................................................................ACTTTTTTTTTTTTTTTTTTTAACCAT............................................................................................................272.000.00-2.00------------------------
.................................................................................................................CCACTTTTTTTTTTTTTTTTTTTATAG..............................................................................................................272.000.001.00-1.00-----------------------
..............................................................................................................AGGCCACTTTTTTTTTTTTCTCT.....................................................................................................................232.000.00----2.00---------------------
...................................................................................................................ACTTTTTTTTTTTTTTTTTTTATAT..............................................................................................................252.000.001.001.00------------------------
...................................................................................................................ACTTTTTTTTTTTTTTTTTTTATCCG.............................................................................................................262.000.001.00--1.00----------------------
...................................................................................................................ACTTTTTTTTTTTTTTTTTTTAAAACG............................................................................................................272.000.001.00----1.00--------------------
...........................................................................................................ATTAGGCCACTTTTTTTTTTTTTTAAAG...................................................................................................................282.000.00-----2.00--------------------
..............................................................................................................AGGCCACTTTTTTTTTTTTTC.......................................................................................................................212.000.00------2.00-------------------
...................................................................................................................ACTTTTTTTTTTTTTTTTTTTATCTG.............................................................................................................262.000.001.00-1.00-----------------------
..................................................................................................................CACTTTTTTTTTTTTTTTTTTTAAAATG............................................................................................................282.000.001.001.00------------------------
...................................................................................................................ACTTTTTTTTTTTTTTTTTTTATTGG.............................................................................................................262.000.001.00---1.00---------------------
.................................................................................................................CCACTTTTTTTTTTTTTTTTTTTAATG..............................................................................................................271.000.001.00-------------------------
..............................................................................................................AGGCCACTTTTTTTTTTTTTTTTTTTAA................................................................................................................2811.001.00----1.00---------------------
...................................................................................................................ACTTTTTTTTTTTTTTTTTTTAAAAAAT...........................................................................................................281.000.00-1.00------------------------
...................................................................................................................ACTTTTTTTTTTTTTTTTTTTAAAGAAAAG.........................................................................................................301.000.00-----1.00--------------------
...................................................................................................................ACTTTTTTTTTTTTTTTTTTTAAAGGGAG..........................................................................................................291.000.00----1.00---------------------
..................................................................................................................CACTTTTTTTTTTTTTTTTTTTAAATAG............................................................................................................281.000.001.00-------------------------
...........................................................................................................ATTAGGCCACTTTTTTTTTTTTTTTTTTTT.................................................................................................................301.000.00----1.00---------------------
...................................................................................................................ACTTTTTTTTTTTTTTTTTTTAAATGT............................................................................................................271.000.001.00-------------------------
..............................................................................................................AGGCCACTTTTTTTTTTTTTTTCCCT..................................................................................................................261.000.00------1.00-------------------
.................................................................................................................CCACTTTTTTTTTTTTTTTTGTTG.................................................................................................................241.000.001.00-------------------------
...........................................................................................................ATTAGGCCACTTTTTTTTTTTTTTT......................................................................................................................2511.001.00------1.00-------------------
...................................................................................................................ACTTTTTTTTTTTTTTTTTTTATTAA.............................................................................................................261.000.00-1.00------------------------
...................................................................................................................ACTTTTTTTTTTTTTTTTTTTAACCTT............................................................................................................271.000.00-1.00------------------------
...................................................................................................................ACTTTTTTTTTTTTTTTTTTTATTTC.............................................................................................................261.000.00----1.00---------------------
...GAGAAGAGGGATGAAATAGCTGATAC.............................................................................................................................................................................................................................2611.001.00-----------------------1.00--
...................................................................................................................ACTTTTTTTTTTTTTTTTTTTATCG..............................................................................................................251.000.001.00-------------------------
.........................................................................................................GGATTAGGCCACTTTTTTTTTTTTTTC......................................................................................................................271.000.00----1.00---------------------
...................................................................................................................ACTTTTTTTTTTTTTTTTTTTAATCTA............................................................................................................271.000.00-1.00------------------------
...................................................................................................................ACTTTTTTTTTTTTTTTTTTTAACTAG............................................................................................................271.000.001.00-------------------------
...................................................................................................................ACTTTTTTTTTTTTTTTTTTTATTCG.............................................................................................................261.000.00--1.00-----------------------
.................................................................................................................CCACTTTTTTTTTTTTTTTTTTAAAT...............................................................................................................261.000.00--1.00-----------------------
..............................................................................................................AGGCCACTTTTTTTTTTTTTTTTC....................................................................................................................241.000.00------1.00-------------------
...................................................................................................................ACTTTTTTTTTTTTTTTTTTTAACGAG............................................................................................................271.000.00----1.00---------------------
...................................................................................................................ACTTTTTTTTTTTTTTTTTTTAAAACAT...........................................................................................................281.000.00--1.00-----------------------
..............................................................................................................AGGCCACTTTTTTTTTTTTTTTTCTTA.................................................................................................................271.000.00------1.00-------------------
...................................................................................................................ACTTTTTTTTTTTTTTTTTTTAAATCAT...........................................................................................................281.000.00-1.00------------------------
..................................................................................................................CACTTTTTTTTTTTTTTTTTTTAAGGG.............................................................................................................271.000.00-1.00------------------------
..............................................................................................................AGGCCACTTTTTTTTTTTTCTT......................................................................................................................221.000.00------1.00-------------------
..............................................................................................................AGGCCACTTTTTTTTTTTTTTTTTGGAG................................................................................................................281.000.00----1.00---------------------
...........................................................................................................ATTAGGCCACTTTTTTTTTTTTTTTA.....................................................................................................................2611.001.00----1.00---------------------
........................................................................................................TGGATTAGGCCACTTTTTTTTTT...........................................................................................................................2311.001.00------1.00-------------------
......AAGAGGGATGAAATAACA..................................................................................................................................................................................................................................181.000.00-------------1.00------------
..................................................................................................................CACTTTTTTTTTTTTTTTTTTTATATG.............................................................................................................271.000.001.00-------------------------
..............................................................................................................................................................AGACAGGAATTTTAGTGTTAACTTTTTT................................................................2811.001.00------------1.00-------------
................................................................................................................................................................ACAGGAATTTTAGTGTTAACTTTTTTGTTTT...........................................................3111.001.00-----1.00--------------------
...................................................................................................................ACTTTTTTTTTTTTTTTTTTTAAATCA............................................................................................................271.000.00-1.00------------------------
...................................................................................................................ACTTTTTTTTTTTTTTTTTTTAACTCG............................................................................................................271.000.001.00-------------------------
...................................................................................................................ACTTTTTTTTTTTTTTTTTTTATGAG.............................................................................................................261.000.00------1.00-------------------
..........................................................................................................GATTAGGCCACTTTTTTTTTTT..........................................................................................................................2211.001.00------1.00-------------------
...................................................................................................................ACTTTTTTTTTTTTTTTTTTTATCCC.............................................................................................................261.000.00--1.00-----------------------
.............................................................................................................TAGGCCACTTTTTTTTTA...........................................................................................................................181.000.00----1.00---------------------
...................................................................................................................ACTTTTTTTTTTTTTTTTTTTATAAG.............................................................................................................261.000.00---1.00----------------------
..............................................................................................................AGGCCACTTTTTTTTTTTTTCTC.....................................................................................................................231.000.00------1.00-------------------
.........AGGGATGAAATAGCTGATA..............................................................................................................................................................................................................................1911.001.00---------1.00----------------
...................................................................................................................ACTTTTTTTTTTTTTTTTTTTAATCCC............................................................................................................271.000.00--1.00-----------------------
.................................................................................................................CCACTTTTTTTTTTTTTTTTTCTCT................................................................................................................251.000.00------1.00-------------------
...................................................................................................................ACTTTTTTTTTTTTTTTTTTTAAGTGC............................................................................................................271.000.00----1.00---------------------
..............................................................................................................AGGCCACTTTTTTTTTTTTTTCTT....................................................................................................................241.000.00----1.00---------------------
...................................................................................................................ACTTTTTTTTTTTTTTTTTTTAAATAAT...........................................................................................................281.000.001.00-------------------------
...................................................................................................................ACTTTTTTTTTTTTTTTTTTTAAAACGG...........................................................................................................281.000.00----1.00---------------------
..............................................................................................................AGGCCACTTTTTTTTTTTTTTTTCC...................................................................................................................251.000.00------1.00-------------------
...................................................................................................................ACTTTTTTTTTTTTTTTTTTTAAATCCG...........................................................................................................281.000.00-1.00------------------------
...................................................................................................................ACTTTTTTTTTTTTTTTTTTTAAATCTT...........................................................................................................281.000.001.00-------------------------
.GAGAGAAGAGGGATGACAAA.....................................................................................................................................................................................................................................201.000.00-----------------1.00--------
..................................................................................................................CACTTTTTTTTTTTTTTTTTTTATTAG.............................................................................................................271.000.001.00-------------------------
...................................................................................................................ACTTTTTTTTTTTTTTTTTTTAATCTT............................................................................................................271.000.001.00-------------------------
..................................................................................................................CACTTTTTTTTTTTTTTTTTTTAAACT.............................................................................................................271.000.00-1.00------------------------
.................................................................................................................CCACTTTTTTTTTTTTTTTTTTTAATAG.............................................................................................................281.000.00--1.00-----------------------
...................................................................................................................ACTTTTTTTTTTTTTTTTTTTAACGT.............................................................................................................261.000.001.00-------------------------
..............................................................................................................AGGCCACTTTTTTTTTTTTTTTTCT...................................................................................................................251.000.00----1.00---------------------
.......................................................................................................................TTTTTTTTTTTTTTTTTAAAGAAATACG.......................................................................................................281.000.00-----1.00--------------------
.................................................................................................................CCACTTTTTTTTTTTTTTTTTTTCGAG..............................................................................................................271.000.00----1.00---------------------
..................................................................................................................CACTTTTTTTTTTTTTTTTTTTAAAAC.............................................................................................................271.000.00-1.00------------------------
...................................................................................................................ACTTTTTTTTTTTTTTTTTTTAAAACTG...........................................................................................................281.000.001.00-------------------------
.................................................................................................................CCACTTTTTTTTTTTTTTTTTTAGGG...............................................................................................................261.000.00-----1.00--------------------
.................................................................................................................................................................................AACTTTTTTGTTTTTTTCAAG....................................................211.000.00-----1.00--------------------
...................................................................................................................ACTTTTTTTTTTTTTTTTTTTAAATTTC...........................................................................................................281.000.00----1.00---------------------
..................................................................................................................................................................................ACTTTTTTGTTTTTTTATAG....................................................201.000.00----1.00---------------------
..............................................................................................................AGGCCACTTTTTTTTTTTCC........................................................................................................................201.000.00------1.00-------------------
.................................................................................................................CCACTTTTTTTTTTTTTTTTTCAAG................................................................................................................251.000.00--1.00-----------------------
...........................................................................................................ATTAGGCCACTTTTTTTTTTTTTTTTTTAAAG...............................................................................................................321.000.00----1.00---------------------
...................................................................................................................ACTTTTTTTTTTTTTTTTTTTAATCGT............................................................................................................271.000.00-1.00------------------------
..............................................................................................................AGGCCACTTTTTTTTTTTTTTTCTTC..................................................................................................................261.000.00----1.00---------------------
...................................................................................................................ACTTTTTTTTTTTTTTTTTTTAAAATAC...........................................................................................................281.000.00---1.00----------------------
..............................................................................................................AGGCCACTTTTTTTTTTTTTTTTTTTTTAT..............................................................................................................301.000.00----1.00---------------------
...................................................................................................................ACTTTTTTTTTTTTTTTTTTTAAATCAA...........................................................................................................281.000.001.00-------------------------
..................................................................................................................CACTTTTTTTTTTTTTTTTTTTACTTG.............................................................................................................271.000.001.00-------------------------
..................................................................................................................CACTTTTTTTTTTTTTTTTTTTATAA..............................................................................................................261.000.001.00-------------------------
.................................................................................................................CCACTTTTTTTTTTTTTTTTTTTCTA...............................................................................................................261.000.00--1.00-----------------------
........................................................................................................TGGATTAGGCCACTTTTTTTTTTTTTTTTT....................................................................................................................3011.001.00----1.00---------------------
...................................................................................................................ACTTTTTTTTTTTTTTTTTTTAAAAGG............................................................................................................271.000.00-----1.00--------------------
.............................................................................................................TAGGCCACTTTTTTTTTTTGTGC......................................................................................................................231.000.00----1.00---------------------
.......AGAGGGATGAAATAGCATAG...............................................................................................................................................................................................................................201.000.00--------1.00-----------------
..................................................................................................................CACTTTTTTTTTTTTTTTTTTTAAAAAA............................................................................................................281.000.00-----1.00--------------------
..................................................................................................................CACTTTTTTTTTTTTTTTTTTTAATTG.............................................................................................................271.000.00-----1.00--------------------
.................................................................................................................CCACTTTTTTTTTTTTTTTTTTATAG...............................................................................................................261.000.001.00-------------------------
.................................................................................................................CCACTTTTTTTTTTTTTTTTTTTCCG...............................................................................................................261.000.00---1.00----------------------
............................................................................................................TTAGGCCACTTTTTTTTTTTTTTAAA....................................................................................................................261.000.00----1.00---------------------
..............................................................................................................AGGCCACTTTTTTTTTTCCTT.......................................................................................................................211.000.00----1.00---------------------
..............................................................................................................AGGCCACTTTTTTTTTTTTTTTTTCTT.................................................................................................................271.000.00------1.00-------------------
..................................................................................................................CACTTTTTTTTTTTTTTTTTTTAAAGAAACA.........................................................................................................311.000.00-----1.00--------------------
...................................................................................................................ACTTTTTTTTTTTTTTTTTTTAAATATG...........................................................................................................281.000.00---1.00----------------------
......................................................................................................................................................................................................................................ATGTAAGCAGTGGTTGTG..181.000.00----------------------1.00---
...........................................................................................................ATTAGGCCACTTTTTTTTTTTTTCT......................................................................................................................251.000.00------1.00-------------------
..............................................................................................................AGGCCACTTTTTTTTTTTTTTTCTC...................................................................................................................251.000.00------1.00-------------------
...................................................................................................................ACTTTTTTTTTTTTTTTTTTTAAGCGG............................................................................................................271.000.00----1.00---------------------
..................................................................................................................CACTTTTTTTTTTTTTTTTTTTAATCAG............................................................................................................281.000.001.00-------------------------
...................................................................................................................ACTTTTTTTTTTTTTTTTTTTAAAATA............................................................................................................271.000.00-1.00------------------------
...................................................................................................................ACTTTTTTTTTTTTTTTTTTTAAAAATG...........................................................................................................281.000.001.00-------------------------
...................................................................................................................ACTTTTTTTTTTTTTTTTTTTAAAAGT............................................................................................................271.000.001.00-------------------------
...................................................................................................................ACTTTTTTTTTTTTTTTTTTTATTCA.............................................................................................................261.000.00-1.00------------------------
...................................................................................................................ACTTTTTTTTTTTTTTTTTTTAATCT.............................................................................................................261.000.00-1.00------------------------
..............................................................................................................AGGCCACTTTTTTTTTTTTTTTTTCTTG................................................................................................................281.000.00------------------1.00-------
.................................................................................................................CCACTTTTTTTTTTTTTTTTTTTCGG...............................................................................................................261.000.00--1.00-----------------------
..................................................................................................................CACTTTTTTTTTTTTTTTTTTTATA...............................................................................................................251.000.001.00-------------------------
...........................................................................................................ATTAGGCCACTTTTTTTTTTTTTC.......................................................................................................................241.000.00----1.00---------------------
..............................................................................................................AGGCCACTTTTTTTTTTTTA........................................................................................................................201.000.00----1.00---------------------
..............................................................................................................AGGCCACTTTTTTTTTTTTTTTTTC...................................................................................................................251.000.00----1.00---------------------
...................................................................................................................ACTTTTTTTTTTTTTTTTTTTAATC..............................................................................................................251.000.00-1.00------------------------
..................................................................................................................CACTTTTTTTTTTTTTTTTTTTATTTG.............................................................................................................271.000.00-1.00------------------------
...................................................................................................................ACTTTTTTTTTTTTTTTTTTTAATACG............................................................................................................271.000.001.00-------------------------
..............................................................................................................AGGCCACTTTTTTTTTTTTTAC......................................................................................................................221.000.00----1.00---------------------
................................................................................................................................................................................TAACTTTTTTGTTTTTTGGTG.....................................................211.000.00--------------------1.00-----
.................................................................................................................CCACTTTTTTTTTTTTTTTTTTTAACG..............................................................................................................271.000.001.00-------------------------
...................................................................................................................ACTTTTTTTTTTTTTTTTTTTATGTG.............................................................................................................261.000.00---1.00----------------------
..............................................................................................................AGGCCACTTTTTTTTTTTTTTCTTG...................................................................................................................251.000.00----1.00---------------------
..............................................................................................................AGGCCACTTTTTTTTTTTTTTTTTTTCGAG..............................................................................................................301.000.00----1.00---------------------
...................................................................................................................ACTTTTTTTTTTTTTTTTTTTAATAGG............................................................................................................271.000.001.00-------------------------
..................................................................................................................................................................................ACTTTTTTGTTTTTTTTAGTAG..................................................221.000.00------1.00-------------------
......................................................................................................................................................TTCCCTTAAGACAGGAATGGGT..............................................................................221.000.00--------------1.00-----------
...................................................................................................................ACTTTTTTTTTTTTTTTTTTTAATTCG............................................................................................................271.000.00-1.00------------------------
..................................................................................................................................................................................ACTTTTTTGTTTTTTTTCCC....................................................201.000.00----1.00---------------------
...................................................................................................................ACTTTTTTTTTTTTTTTTTTTAAAGGG............................................................................................................271.000.00----1.00---------------------
...................................................................................................................ACTTTTTTTTTTTTTTTTTTTAAAACTT...........................................................................................................281.000.001.00-------------------------
.................................................................................................................CCACTTTTTTTTTTTTTTTTTTTAATTG.............................................................................................................281.000.00---1.00----------------------
..................................................................................................................CACTTTTTTTTTTTTTTTTTTTATAT..............................................................................................................261.000.00---1.00----------------------
............................................................................................................TTAGGCCACTTTTTTTTTTTCT........................................................................................................................221.000.00------1.00-------------------
...................................................................................................................ACTTTTTTTTTTTTTTTTTTTAATCCA............................................................................................................271.000.00-1.00------------------------
...................................................................................................................ACTTTTTTTTTTTTTTTTTTTAAATTGG...........................................................................................................281.000.001.00-------------------------
..................................................................................................................CACTTTTTTTTTTTTTTTTTTTAACACG............................................................................................................281.000.001.00-------------------------
...................................................................................................................ACTTTTTTTTTTTTTTTTTTTAAAATGG...........................................................................................................281.000.001.00-------------------------
......................CTGATACTATAAGCC.....................................................................................................................................................................................................................1540.250.25-------------------------0.25
.................................................................................................................CCACTTTTTTTTTTTTTTTTTTTAAAAAAG...........................................................................................................3050.200.20-0.20------------------------
.................................................................................................................CCACTTTTTTTTTTTTTTTTTTTAAA...............................................................................................................2650.200.20----0.20---------------------
.................................................................................................................CCACTTTTTTTTTTTTTTTTTTTAAAAG.............................................................................................................2850.200.200.20-------------------------
.................................................................................................................CCACTTTTTTTTTTTTTTTTTTTAAAAT.............................................................................................................2850.200.20---0.20----------------------
.................................................................................................................CCACTTTTTTTTTTTTTTTTTTTAAATTTT...........................................................................................................3050.200.200.20-------------------------
..................................................................................................................CACTTTTTTTTTTTTTTTTTTTAAAGA.............................................................................................................2790.110.110.11-------------------------
..................................................................................................................................................................................ACTTTTTTGTTTTTTTTAA.....................................................1990.110.11-----0.11--------------------

Antisense strand
AGAGAGAAGAGGGATGAAATAGCTGATACTATAAGCCTTTTTGGGAAAGGAAATATTTACAGTAAGTATAGTAGAAATGTGATGCTTTAATTAGAACAGTATTGTGGATTAGGCCACTTTTTTTTTTTTTTTTTTTAAAGAAATGAACCTTTCCCTTAAGACAGGAATTTTAGTGTTAACTTTTTTGTTTTTTTTAATAGCTGGTATTTGAAGATGCTACAGTGCTGCAAATGTAAGCAGTGGTTTCATG
..............................................................................................................(((......(((.(((((((......))))))).)))......))).((((((((((....(((....)))))))))))))...........................................................
.............................................................................................................110.......................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR037941(GSM510479)
293DroshaTN. (cell line)
SRR189782SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)
SRR189784SRR037936(GSM510474)
293cand1. (cell line)
SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)
SRR189787SRR037937(GSM510475)
293cand2. (cell line)
SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)
TAX577739(Rovira)
total RNA. (breast)
SRR189786SRR037934(GSM510472)
293cand4_rep3. (cell line)
SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)
SRR191591(GSM715701)
53genomic small RNA (size selected RNA from t. (breast)
SRR033728(GSM497073)
MALT (MALT413). (B cell)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR444060(SRX128908)
Sample 18cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
...............................................................................................................GGCCACTTTTTTTTTGTAG........................................................................................................................ 191.000.00---------------------1.00----
.................................................................................................................................................................................................................................TGCAAATGTAAGCAGTGCTA..... 201.000.00-----------1.00--------------
........................................................................................................................................................................................................................................GTAAGCAGTGGTTTCTTT 181.000.00-------------------1.00------
........................................................................................AATTAGAACAGTATTCCT................................................................................................................................................ 181.000.00----------------1.00---------
...........................................................................................................ATTAGGCCACTTTTTTGGA............................................................................................................................ 191.000.00---------------1.00----------
..............................ATAAGCCTTTTTGGGTTTT......................................................................................................................................................................................................... 191.000.00--------1.00-----------------
............................................................................................................AAAAAAAAAGTGGCCTAA............................................................................................................................ 1820.500.50------------------------0.50-