ID: uc001dnw.2_intron_4_0_chr1_91447928_r.5p
GENE: (1)
chr1:91487347-91487596-


(13)
B-CELL 		(3)
BRAIN 		(9)
BREAST 		(32)
CELL-LINE 		(8)
CERVIX 		(5)
HEART 		(7)
HELA 		(4)
LIVER 		(2)
OTHER 		(1)
RRP40.ip 		(16)
SKIN 		(1)
XRN.ip

Sense strand
CGCCGCGTGCTCCCAACGTCGCCCCGGTTTGACGCACACGGCACCAAACTGTGAGTTTCAGGGGTTATTTGGTCAGATTCGCTGGGACCCGAGTGGGTTTCGGGCCTCTGGGCTGTGGCAGCGGCGGGACTGAGGGTGGCGGAAGAACTTGGGGGACCCGGCCTCCGGCTCTCGGGCCCGGGGAGCTACGCCCTAGGCTGGGTCCCAGCCATCCAAAAGGACGCATTTTGCCGCACAGGCTAAGATGGCG
.....................................................((.(((((((((................(((..((((....))))..))))))))))))))........................................................................................................................................
..................................................51..................................................................119.................................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR033716(GSM497061)
Mentle Cell Lymphoma (MCL114). (B cell)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR189783SRR040036(GSM532921)
G243N. (cervix)		SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)		SRR189784SRR037936(GSM510474)
293cand1. (cell line)		SRR039191(GSM494810)
PBMCs were isolated by ficoll gradient from t. (blood)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR033724(GSM497069)
L428 cell line (L428). (B cell)		SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)		SRR015358(GSM380323)
NaÌøve B Cell (Naive39). (B cell)		SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)		SRR060986(GSM569190)
Human memory B cell [09-001]. (cell line)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		SRR033728(GSM497073)
MALT (MALT413). (B cell)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		GSM359208(GSM359208)
hepg2_bindASP_hl_2. (cell line)		SRR040040(GSM532925)
G612N. (cervix)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)		SRR029124(GSM416753)
HeLa. (hela)		SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)		SRR191478(GSM715588)
30genomic small RNA (size selected RNA from t. (breast)		SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		GSM532876(GSM532876)
G547T. (cervix)		SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)		GSM359174(GSM359174)
hela_5_1. (hela)		SRR040037(GSM532922)
G243T. (cervix)		SRR040028(GSM532913)
G026N. (cervix)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR029129(GSM416758)
SW480. (cell line)		GSM359175(GSM359175)
hela_5_pct. (hela)		SRR033717(GSM497062)
Mentle Cell Lymphoma (MCL112). (B cell)		SRR040016(GSM532901)
G645N. (cervix)		SRR060985(GSM569189)
Human naive B cell [09-001]. (cell line)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		DRR001484(DRX001038)
"Hela long nuclear cell fraction, control". (hela)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR343333(GSM796036)
KSHV (HHV8). (cell line)		TAX577740(Rovira)
total RNA. (breast)		SRR015364(GSM380329)
Plasma B cells (PC44). (B cell)		SRR038855(GSM458538)
D10. (cell line)		GSM450603(GSM450603)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577741(Rovira)
total RNA. (breast)		SRR040025(GSM532910)
G613T. (cervix)		SRR191551(GSM715661)
32genomic small RNA (size selected RNA from t. (breast)		GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		SRR444057(SRX128905)
Sample 15cDNABarcode: AF-PP-334: ACG CTC TTC . (skin)		SRR029126(GSM416755)
143B. (cell line)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		TAX577579(Rovira)
total RNA. (breast)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		TAX577744(Rovira)
total RNA. (breast)		TAX577589(Rovira)
total RNA. (breast)		SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)		SRR033714(GSM497059)
Burkitt Lymphoma (BL134). (B cell)		TAX577738(Rovira)
total RNA. (breast)		SRR038856(GSM458539)
D11. (cell line)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		TAX577745(Rovira)
total RNA. (breast)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		GSM359189(GSM359189)
HepG2_2pm_3. (cell line)		SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)		SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		GSM359177(GSM359177)
hela_nucl_a. (hela)		SRR040015(GSM532900)
G623T. (cervix)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)
...............................................................................................GGTTTCGGGCCTCTGGGCTG.......................................................................................................................................2018.008.008.00----------------------------------------------------------------------------------------------------
.................................GCACACGGCACCAAACTG.......................................................................................................................................................................................................1817.007.005.00------------------1.00----1.00----------------------------------------------------------------------------
.....................................ACGGCACCAAACTGTGAG...................................................................................................................................................................................................1816.006.005.00---------------------------------------------------------------1.00------------------------------------
............................................................................................................TGGGCTGTGGCAGCGGCGGG..........................................................................................................................2016.006.00----1.00---2.00-----------------1.00---------------------------1.00------------------------------------1.00---------
...........................................................................................................CTGGGCTGTGGCAGCGGCGGG..........................................................................................................................2115.005.00-1.00---1.001.00------------------------------------------1.00------------------------------1.00--------------------
........................CGGTTTGACGCACACGGC................................................................................................................................................................................................................1815.005.00---5.00-------------------------------------------------------------------------------------------------
...........................................................................................................................GCGGGACTGAGGGTGGCG.............................................................................................................1815.005.00--------2.00-----------1.00-------------------------------1.00------------------1.00-----------------------------
.............................................................................................TGGGTTTCGGGCCTCTGGGC.........................................................................................................................................2014.004.004.00----------------------------------------------------------------------------------------------------
...........................................................................................................CTGGGCTGTGGCAGCGGCGGGGA........................................................................................................................2314.005.00-----------------------------------1.00------------------------1.00---------------1.00------------1.00-----------
.....................................................................................................GGGCCTCTGGGCTGTGGCAGC................................................................................................................................2114.004.003.00-----------------------------------------------------------------------------------1.00----------------
.......................................................................................................GCCTCTGGGCTGTGGCAGCGG..............................................................................................................................2114.004.00--------------1.00---------------1.00-----------------------------------------1.00-1.00--------------------------
..........................................................................................................................................GCGGAAGAACTTGGGGGACC............................................................................................2014.004.00-4.00---------------------------------------------------------------------------------------------------
........................................................................................................................................TGGCGGAAGAACTTGGGG................................................................................................1813.003.00-3.00---------------------------------------------------------------------------------------------------
...............................................................GTTATTTGGTCAGATTCGCTGG.....................................................................................................................................................................2213.003.00--3.00--------------------------------------------------------------------------------------------------
...........................................................................................................CTGGGCTGTGGCAGCGGCGGGAA........................................................................................................................2313.002.00-----2.00-----------------------------------1.00-----------------------------------------------------------
..........................................................................................GAGTGGGTTTCGGGCCTCTGGG..........................................................................................................................................2213.003.00-3.00---------------------------------------------------------------------------------------------------
...........................................................................................................................................CGGAAGAACTTGGGGGAC.............................................................................................1812.002.00-------------------------------------------------------1.00---1.00-----------------------------------------
............................................................................................................TGGGCTGTGGCAGCGGC.............................................................................................................................1712.002.00-----------1.00----------------------------------------------------------------------1.00------------------
.....................................ACGGCACCAAACTGTGAGTTT................................................................................................................................................................................................2112.002.00-------------------------2.00---------------------------------------------------------------------------
...........................................................................................................CTGGGCTGTGGCAGCGGCGGGGAA.......................................................................................................................2412.005.00-------1.00-1.00-------------------------------------------------------------------------------------------
...........................................................................................................CTGGGCTGTGGCAGCGGCGGGA.........................................................................................................................2212.002.00----------1.00---------------------------------------------------------1.00--------------------------------
.............................................................................................................................................GAAGAACTTGGGGGACCCGG.........................................................................................2012.002.00-2.00---------------------------------------------------------------------------------------------------
............................................................................................................TGGGCTGTGGCAGCGGCGGGG.........................................................................................................................2112.006.00----1.00----------------------1.00-------------------------------------------------------------------------
................................................................................................GTTTCGGGCCTCTGGGCTGTGGC...................................................................................................................................2312.002.00-1.001.00--------------------------------------------------------------------------------------------------
.....................................................AGTTTCAGGGGTTATTTGG..................................................................................................................................................................................1912.002.00-2.00---------------------------------------------------------------------------------------------------
............................................................................................................TGGGCTGTGGCAGCGGCG............................................................................................................................1812.002.00--------------1.00---------------------------------------------------------------1.00----------------------
......................................CGGCACCAAACTGTGAG...................................................................................................................................................................................................1712.002.002.00----------------------------------------------------------------------------------------------------
................................CGCACACGGCACCAAACTGTTTGA..................................................................................................................................................................................................242.000.00----------------2.00------------------------------------------------------------------------------------
.........................................................................................................................................GGCGGAAGAACTTGGGGGACCC...........................................................................................2212.002.00-----------2.00-----------------------------------------------------------------------------------------
.......................................................................................................GCCTCTGGGCTGTGGCAG.................................................................................................................................1821.501.500.50---------0.50-------------------0.50----------------------------------------------------------------------
..CCGCGTGCTCCCAACGTCGC....................................................................................................................................................................................................................................2011.001.00--------------------------------1.00--------------------------------------------------------------------
................................................................................GCTGGGACCCGAGTGGGTT.......................................................................................................................................................1911.001.00--1.00--------------------------------------------------------------------------------------------------
.......................................................................GTCAGATTCGCTGGGACC.................................................................................................................................................................1811.001.00-------------------1.00---------------------------------------------------------------------------------
................................................................................................................CTGTGGCAGCGGCGGGGA........................................................................................................................181.000.00----------------------------------1.00------------------------------------------------------------------
...................CGCCCCGGTTTGACGCACACG..................................................................................................................................................................................................................2111.001.00---------------------1.00-------------------------------------------------------------------------------
....................................................................TTGGTCAGATTCGCTGGGACC.................................................................................................................................................................2111.001.00-----------------------------------------------------1.00-----------------------------------------------
.........................................................................................................................................................GGACCCGGCCTCCGGC.................................................................................1611.001.00----------------------1.00------------------------------------------------------------------------------
...............................................ACTGTGAGTTTCAGGGG..........................................................................................................................................................................................1711.001.00----------1.00------------------------------------------------------------------------------------------
...............................................................GTTATTTGGTCAGATTCGCGGG.....................................................................................................................................................................221.000.00--1.00--------------------------------------------------------------------------------------------------
...................................................................................................................................................................TCCGGCTCTCGGGCCCCCAC...................................................................201.000.00---------------1.00-------------------------------------------------------------------------------------
...........................................................................................................CTGGGCTGTGGCAGCGGCGGGG.........................................................................................................................2211.005.00---------1.00-------------------------------------------------------------------------------------------
...........................................................................GATTCGCTGGGACCCGAG.............................................................................................................................................................1811.001.00-----------------------1.00-----------------------------------------------------------------------------
..........................................................................................................................GGCGGGACTGAGGGTGGCGGAAT.........................................................................................................231.000.00-------------------------------------1.00---------------------------------------------------------------
....................................................................................................CGGGCCTCTGGGCTGTGGCAGC................................................................................................................................2211.001.00--1.00--------------------------------------------------------------------------------------------------
...........................................................................................................................GCGGGACTGAGGGTGGCGG............................................................................................................1911.001.00------------------------1.00----------------------------------------------------------------------------
............................................................................................................................CGGGACTGAGGGTGGCGG............................................................................................................1811.001.00---------------------------------------1.00-------------------------------------------------------------
...................................................................................................TCGGGCCTCTGGGCTGTGGAA..................................................................................................................................211.000.00---------------------------------------------------1.00-------------------------------------------------
...................................................................................................................TGGCAGCGGCGGGACGTT.....................................................................................................................181.000.00-------------------------------------------------------------1.00---------------------------------------
................................................................................................GTTTCGGGCCTCTGGGCTGTGGCAGC................................................................................................................................2611.001.00-------1.00---------------------------------------------------------------------------------------------
........................................GCACCAAACTGTGAGTTTCAGGGGTTATTTG...................................................................................................................................................................................3111.001.00------1.00----------------------------------------------------------------------------------------------
..........................................................................................................................................GCGGAAGAACTTGGGGGACCCGGCA.......................................................................................2511.001.00--------------------1.00--------------------------------------------------------------------------------
....GCGTGCTCCCAACGTCGCCCCGGTTT............................................................................................................................................................................................................................2611.001.00----------------------------------------------------------------------------------------------1.00------
...................................................................TTTGGTCAGATTCGCTGGGA...................................................................................................................................................................2011.001.00-1.00---------------------------------------------------------------------------------------------------
..................................................................................................TTCGGGCCTCTGGGCTGTGGC...................................................................................................................................2111.001.00----1.00------------------------------------------------------------------------------------------------
......................CCCGGTTTGACGCACACGGC................................................................................................................................................................................................................2011.001.00------------------------------------------------------------------1.00----------------------------------
...................................................................................................TCGGGCCTCTGGGCTGTGGCAG.................................................................................................................................2211.001.00-------1.00---------------------------------------------------------------------------------------------
..............AACGTCGCCCCGGTTTGACGCACACG..................................................................................................................................................................................................................2611.001.00------------------------------------------------1.00----------------------------------------------------
..........................................................................................................TCTGGGCTGTGGCAGCGGCGGGAC........................................................................................................................2411.001.00----------------------1.00------------------------------------------------------------------------------
...........................................................................GATTCGCTGGGACCCGAGT............................................................................................................................................................1911.001.00---------1.00-------------------------------------------------------------------------------------------
.....CGTGCTCCCAACGTCGCCC..................................................................................................................................................................................................................................1911.001.00----------------------------1.00------------------------------------------------------------------------
.......................CCGGTTTGACGCACACGGC................................................................................................................................................................................................................1911.001.00---1.00-------------------------------------------------------------------------------------------------
...........................................................................................................CTGGGCTGTGGCAGCGGCGGGAAA.......................................................................................................................2411.002.00-----------------------------------------------------------------------------------1.00-----------------
..............................................................................................GGGTTTCGGGCCTCTGGG..........................................................................................................................................1811.001.00--------------------------1.00--------------------------------------------------------------------------
............................................................................ATTCGCTGGGACCCGAGTGG..........................................................................................................................................................2011.001.00--------------------------------------------------------------------------------------------1.00--------
......................CCCGGTTTGACGCACACGGCA...............................................................................................................................................................................................................2111.001.00--1.00--------------------------------------------------------------------------------------------------
.................GTCGCCCCGGTTTGACGCA......................................................................................................................................................................................................................1911.001.00-----------------------------------------------------------------------------------------------1.00-----
..............................................................................................................................GGACTGAGGGTGGCGGAAGAACTTG...................................................................................................2511.001.00--------------------------------------------------------1.00--------------------------------------------
....................GCCCCGGTTTGACGCACA....................................................................................................................................................................................................................1811.001.00--------------------------------------------------------------1.00--------------------------------------
...............ACGTCGCCCCGGTTTGAC.........................................................................................................................................................................................................................1811.001.00----------------------------------------------1.00------------------------------------------------------
...........................................................................................................CTGGGCTGTGGCAGCGGCGGGGCAG......................................................................................................................2511.005.00-------1.00---------------------------------------------------------------------------------------------
..........................GTTTGACGCACACGGCA...............................................................................................................................................................................................................1711.001.00-------------------------------1.00---------------------------------------------------------------------
..........................................................................................................................................................................................................TCCCAGCCATCCAAACA...............................171.000.00-------------------------------------------------------------------------------------1.00---------------
...........................................................................................................CTGGGCTGTGGCAGCGGCGGGGGA.......................................................................................................................2411.005.00----------------------------------------------------------1.00------------------------------------------
...........................................................................................................CTGGGCTGTGGCAGCGGCGGGACA.......................................................................................................................241.000.00---------1.00-------------------------------------------------------------------------------------------
..........................................................................................................................GGCGGGACTGAGGGTGGCGGAAGT........................................................................................................241.000.00-----1.00-----------------------------------------------------------------------------------------------
..............................GACGCACACGGCACCAAA..........................................................................................................................................................................................................1811.001.00---------------------------------------------------------------------------------------1.00-------------
.......................................................................................................GCCTCTGGGCTGTGGCAGC................................................................................................................................1911.001.00---------------------1.00-------------------------------------------------------------------------------
....................................................................................................CGGGCCTCTGGGCTGTGGCAGG................................................................................................................................221.000.00--1.00--------------------------------------------------------------------------------------------------
..........................................................................................................TCTGGGCTGTGGCAGCGGCG............................................................................................................................2011.001.00----1.00------------------------------------------------------------------------------------------------
................................CGCACACGGCACCAAACTGTGAG...................................................................................................................................................................................................2311.001.00-------1.00---------------------------------------------------------------------------------------------
................................CGCACACGGCACCAAACTGTGAGT..................................................................................................................................................................................................2411.001.00---------------------------------------------------------------------------------1.00-------------------
..........................................................................AGATTCGCTGGGACCCGAG.............................................................................................................................................................1911.001.00----------1.00------------------------------------------------------------------------------------------
..........................................................CAGGGGTTATTTGGTGT...............................................................................................................................................................................171.000.00---------------------------------------------------------------------------------------------1.00-------
........................................................................................................CCTCTGGGCTGTGGCAGCGGCGGGG.........................................................................................................................251.000.00-----------------1.00-----------------------------------------------------------------------------------
.......................................................................................................................................................................................................................AAAGGACGCATTTTGCCGAGTG.............221.000.00---------------------------------------------------------------1.00-------------------------------------
....................................................................................................................................................................................................................................TGCCGCACAGGCTAAGATGGC.2111.001.00------------------------------------1.00----------------------------------------------------------------
...........................................................................................................CTGGGCTGTGGCAGCGGCGGGACT.......................................................................................................................2411.001.00---------------------------------------------------------------------1.00-------------------------------
.......................................................................................................GCCTCTGGGCTGTGGCAGCGGCGGGA.........................................................................................................................2611.001.00---------------------------------------------------------1.00-------------------------------------------
..........................................................................................................................................GCGGAAGAACTTGGGGGACCCGGC........................................................................................2411.001.00-----------------1.00-----------------------------------------------------------------------------------
...........................................................................................................CTGGGCTGTGGCAGCGGCG............................................................................................................................1911.001.00-----------------------1.00-----------------------------------------------------------------------------
...............................ACGCACACGGCACCAAAC.........................................................................................................................................................................................................1811.001.00------1.00----------------------------------------------------------------------------------------------
............................................................................................GTGGGTTTCGGGCCTCTG............................................................................................................................................1811.001.00----1.00------------------------------------------------------------------------------------------------
..................................................................................................................GTGGCAGCGGCGGGACTGAGGG..................................................................................................................2211.001.00-1.00---------------------------------------------------------------------------------------------------
.....................................ACGGCACCAAACTGTGAGTTTCAG.............................................................................................................................................................................................2411.001.00---------------------------------------------------------------------------1.00-------------------------
.........................GGTTTGACGCACACGGCACCAA...........................................................................................................................................................................................................2211.001.00--------------------------------------------------------------------------------------1.00--------------
........................................................................TCAGATTCGCTGGGACCC................................................................................................................................................................1811.001.00------1.00----------------------------------------------------------------------------------------------
............................................................................ATTCGCTGGGACCCGAG.............................................................................................................................................................1711.001.00---------------------------------------------1.00-------------------------------------------------------
..................................................................................................TTCGGGCCTCTGGGCTGTGGA...................................................................................................................................211.000.00------------------1.00----------------------------------------------------------------------------------
............................................................................................GTGGGTTTCGGGCCTCTGGG..........................................................................................................................................2011.001.00--1.00--------------------------------------------------------------------------------------------------
......................CCCGGTTTGACGCACAC...................................................................................................................................................................................................................1711.001.00-----------------------------------------------------------------1.00-----------------------------------
...........................................................................................................CTGGGCTGTGGCAGCGGCGGGGT........................................................................................................................2311.005.00-----1.00-----------------------------------------------------------------------------------------------
..........................................................................................................TCTGGGCTGTGGCAGCGG..............................................................................................................................1811.001.00------1.00----------------------------------------------------------------------------------------------
................................CGCACACGGCACCAAACTGTG.....................................................................................................................................................................................................2111.001.00-----------------------------1.00-----------------------------------------------------------------------
.........................................................................CAGATTCGCTGGGACCCGAG.............................................................................................................................................................2011.001.00--1.00--------------------------------------------------------------------------------------------------
......................CCCGGTTTGACGCACACGG.................................................................................................................................................................................................................1911.001.001.00----------------------------------------------------------------------------------------------------
..........................................................................AGATTCGCTGGGACCCGAGTGGGTTTCGGGCCT...............................................................................................................................................3311.001.00------------------------------------------------------------------------------------------1.00----------
..................................................................................................TTCGGGCCTCTGGGCTGTG.....................................................................................................................................1911.001.00------------------1.00----------------------------------------------------------------------------------
...............................ACGCACACGGCACCAAACTG.......................................................................................................................................................................................................2011.001.00-------------------------------------------------------------------------------1.00---------------------
...........................................................................................................CTGGGCTGTGGCAGCGGCGGGT.........................................................................................................................2211.005.00-----1.00-----------------------------------------------------------------------------------------------
........GCTCCCAACGTCGCCCCGGT..............................................................................................................................................................................................................................2011.001.00-----------------------------------------------1.00-----------------------------------------------------
................................................................TTATTTGGTCAGATTCG.........................................................................................................................................................................1711.001.00---1.00-------------------------------------------------------------------------------------------------
..................................................................................................TTCGGGCCTCTGGGCTG.......................................................................................................................................1720.500.50---------------------------0.50-------------------------------------------------------------------------
..................................CACACGGCACCAAAC.........................................................................................................................................................................................................1520.500.50------------------------------------------------------------------------------------------------0.50----
.............................................................................................................................GGGACTGAGGGTGGCGGA...........................................................................................................1820.500.50-------------------------------------------------------------------------------------------------0.50---
...........................................................................................................CTGGGCTGTGGCAGCGG..............................................................................................................................1720.500.50---0.50-------------------------------------------------------------------------------------------------
................................CGCACACGGCACCAAA..........................................................................................................................................................................................................1620.500.50----------------------------0.50------------------------------------------------------------------------
........................................GCACCAAACTGTGAGT..................................................................................................................................................................................................1630.330.33--------------------------------------------------------------------------------------------------0.33--
.....................................................................................................................................................................................................CTGGGTCCCAGCCATC.....................................1640.250.25---------------------------------------------------------------------------------------------------0.25-
............................................................................................................................CGGGACTGAGGGTGG...............................................................................................................1550.200.20----------------------------------------------------------------------------------------------------0.20
.......................................................................................................GCCTCTGGGCTGTGGC...................................................................................................................................1690.110.11-------------------------------0.11---------------------------------------------------------------------

Antisense strand
CGCCGCGTGCTCCCAACGTCGCCCCGGTTTGACGCACACGGCACCAAACTGTGAGTTTCAGGGGTTATTTGGTCAGATTCGCTGGGACCCGAGTGGGTTTCGGGCCTCTGGGCTGTGGCAGCGGCGGGACTGAGGGTGGCGGAAGAACTTGGGGGACCCGGCCTCCGGCTCTCGGGCCCGGGGAGCTACGCCCTAGGCTGGGTCCCAGCCATCCAAAAGGACGCATTTTGCCGCACAGGCTAAGATGGCG
.....................................................((.(((((((((................(((..((((....))))..))))))))))))))........................................................................................................................................
..................................................51..................................................................119.................................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR033716(GSM497061)
Mentle Cell Lymphoma (MCL114). (B cell)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR189783SRR040036(GSM532921)
G243N. (cervix)		SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)		SRR189784SRR037936(GSM510474)
293cand1. (cell line)		SRR039191(GSM494810)
PBMCs were isolated by ficoll gradient from t. (blood)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR033724(GSM497069)
L428 cell line (L428). (B cell)		SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)		SRR015358(GSM380323)
NaÌøve B Cell (Naive39). (B cell)		SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)		SRR060986(GSM569190)
Human memory B cell [09-001]. (cell line)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		SRR033728(GSM497073)
MALT (MALT413). (B cell)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		GSM359208(GSM359208)
hepg2_bindASP_hl_2. (cell line)		SRR040040(GSM532925)
G612N. (cervix)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)		SRR029124(GSM416753)
HeLa. (hela)		SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)		SRR191478(GSM715588)
30genomic small RNA (size selected RNA from t. (breast)		SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		GSM532876(GSM532876)
G547T. (cervix)		SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)		GSM359174(GSM359174)
hela_5_1. (hela)		SRR040037(GSM532922)
G243T. (cervix)		SRR040028(GSM532913)
G026N. (cervix)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR029129(GSM416758)
SW480. (cell line)		GSM359175(GSM359175)
hela_5_pct. (hela)		SRR033717(GSM497062)
Mentle Cell Lymphoma (MCL112). (B cell)		SRR040016(GSM532901)
G645N. (cervix)		SRR060985(GSM569189)
Human naive B cell [09-001]. (cell line)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		DRR001484(DRX001038)
"Hela long nuclear cell fraction, control". (hela)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR343333(GSM796036)
KSHV (HHV8). (cell line)		TAX577740(Rovira)
total RNA. (breast)		SRR015364(GSM380329)
Plasma B cells (PC44). (B cell)		SRR038855(GSM458538)
D10. (cell line)		GSM450603(GSM450603)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577741(Rovira)
total RNA. (breast)		SRR040025(GSM532910)
G613T. (cervix)		SRR191551(GSM715661)
32genomic small RNA (size selected RNA from t. (breast)		GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		SRR444057(SRX128905)
Sample 15cDNABarcode: AF-PP-334: ACG CTC TTC . (skin)		SRR029126(GSM416755)
143B. (cell line)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		TAX577579(Rovira)
total RNA. (breast)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		TAX577744(Rovira)
total RNA. (breast)		TAX577589(Rovira)
total RNA. (breast)		SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)		SRR033714(GSM497059)
Burkitt Lymphoma (BL134). (B cell)		TAX577738(Rovira)
total RNA. (breast)		SRR038856(GSM458539)
D11. (cell line)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		TAX577745(Rovira)
total RNA. (breast)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		GSM359189(GSM359189)
HepG2_2pm_3. (cell line)		SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)		SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		GSM359177(GSM359177)
hela_nucl_a. (hela)		SRR040015(GSM532900)
G623T. (cervix)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)
..................................................................................................................GTGGCAGCGGCGGGACCA...................................................................................................................... 186.000.00-------------3.00--------------------------1.00---1.00-----1.00--------------------------------------------------
......GTGCTCCCAACGTCGATGT................................................................................................................................................................................................................................. 193.000.00------------3.00----------------------------------------------------------------------------------------
.................................................................................................................................................................................GCCTAGGGCGTAGCTCCCCGG.................................................... 2113.003.002.001.00---------------------------------------------------------------------------------------------------
.........................................................................................................................................................GGACCCGGCCTCCGGCAG............................................................................... 1811.000.00---------------1.00-------------------------------------------------------------------------------------
........................................................................................................................................TCCCCCAAGTTCTTCCGCCA.............................................................................................. 2011.001.00----------------------------------------------------------------------1.00------------------------------
............................................................................................................................................................................................TGGGACCCAGCCTAGGGCG........................................... 1911.001.00----1.00------------------------------------------------------------------------------------------------
........................................................................................................................................................................................................CTTTTGGATGGCTGGGACC............................... 1911.001.00-----------------------------------------------------------------------------1.00-----------------------
...........................................CCTGAAACTCACAGTTTGG............................................................................................................................................................................................ 1911.001.00--1.00--------------------------------------------------------------------------------------------------
............................................................................................................................................................................................GACCCAGCCTAGGGCG.............................................. 1611.001.00-------------------------------------------------------------------1.00---------------------------------
...............................................................................................................................................................GGCCTCCGGCTCTCGGGCCCAA..................................................................... 221.000.00----------------------------------------------------------------------------------------1.00------------
..............................................................................................................................................................................................................AGCCATCCAAAAGGAATGA......................... 191.000.00-------------------------------------------1.00---------------------------------------------------------
...................................................................TTTGGTCAGATTCGCGAG..................................................................................................................................................................... 181.000.00--------------------------------------1.00--------------------------------------------------------------
..................................................................................................................................................................CTCCGGCTCTCGGGCCCGTCCG.................................................................. 221.000.00-------------------------------------------------------------------------1.00---------------------------
....................................................................................................................................................................................................................CTGTGCGGCAAAATGCGTCCTTTTGG............ 2611.001.00------------------------------------------1.00----------------------------------------------------------
..................................................................................................................GTGGCAGCGGCGGGACCAGT.................................................................................................................... 201.000.00---------------------------------1.00-------------------------------------------------------------------
...............................................................................................................................................................CGGGCCCGAGAGCCGGAGGCC...................................................................... 2111.001.001.00----------------------------------------------------------------------------------------------------
................................................................................................................................................................CCCGAGAGCCGGAGGC.......................................................................... 1640.500.50---0.25--0.25----------------------------------------------------------------------------------------------
..............................................................................................................................TCCGCCACCCTCAGTCC........................................................................................................... 1720.500.50-----------------------------0.50-----------------------------------------------------------------------
...............................................................................................................................................................CCCGAGAGCCGGAGGCC.......................................................................... 1730.330.33---0.33-------------------------------------------------------------------------------------------------