ID: uc001dnm.2_intron_1_0_chr1_90309342_f.5p
GENE: (2)
chr1:90309292-90309541+


(1)
AGO1.ip 		(1)
AGO1.ip OTHER.mut 		(1)
AGO2.ip 		(2)
AGO3.ip 		(8)
B-CELL 		(2)
BRAIN 		(3)
BREAST 		(26)
CELL-LINE 		(3)
CERVIX 		(1)
FIBROBLAST 		(7)
HELA 		(4)
LIVER 		(3)
OTHER 		(1)
RRP40.ip 		(6)
SKIN 		(2)
UTERUS 		(1)
XRN.ip

Sense strand
CCGCGTCCCCAGAGAGCGCCCTGAGAGAACAGGGTGGCCGCTTGGTCCAGGTGCGCGGGGTCGGGTCTGGGTCCAGGGAGCGGGTCGGGAAGTCTGCGGCACGGAGCACTGCTAGTGTCGGATCTGCATCTCCAGCTCTGTGCTGCAGCTTCACTTGCCCGCCCCCCACCACTGGCTTCTCACCCGGGGTCTCTGCCAAACTCTGGCTGCTGCCGCCCTGGGTTCGGGCCGGCGGAAGGCCCTGGGCGTG
........................................................................................((((.((((((((((((((...((....)).(((........))).))))))))))))))))))..................................................................................................
....................................................................................85.........................................................................160........................................................................................
SizePerfect hitTotal NormPerfect NormDRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR033724(GSM497069)
L428 cell line (L428). (B cell)		DRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)		SRR189784SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR015447(SRR015447)
nuclear small RNAs. (breast)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		SRR189786SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)		SRR040015(GSM532900)
G623T. (cervix)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)		GSM1105748AGO1(GSM1105748)
small RNA sequencing data. (ago1 hela)		SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR029124(GSM416753)
HeLa. (hela)		TAX577580(Rovira)
total RNA. (breast)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		DRR000562(DRX000320)
Isolation of RNA following immunoprecipitatio. (ago3 cell line)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR189787SRR343332(GSM796035)
"KSHV (HHV8), EBV (HHV-4)". (cell line)		SRR343333(GSM796036)
KSHV (HHV8). (cell line)		SRR033716(GSM497061)
Mentle Cell Lymphoma (MCL114). (B cell)		SRR038858(GSM458541)
MEL202. (cell line)		SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)		SRR040007(GSM532892)
G601T. (cervix)		SRR039636(GSM518473)
THP1_cyto_sRNAs. (cell line)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR040025(GSM532910)
G613T. (cervix)		SRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR038861(GSM458544)
MM466. (cell line)		SRR363676(GSM830253)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR038859(GSM458542)
MM386. (cell line)		SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)		DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		SRR015448(SRR015448)
cytoplasmic small RNAs. (breast)		SRR029126(GSM416755)
143B. (cell line)		GSM956925Ago2D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		SRR038857(GSM458540)
D20. (cell line)		GSM1105750AGO3(GSM1105750)
small RNA sequencing data. (ago3 hela)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR038863(GSM458546)
MM603. (cell line)		SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)		SRR033714(GSM497059)
Burkitt Lymphoma (BL134). (B cell)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR033723(GSM497068)
L1236 cell line (L1236). (B cell)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)		SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039611(GSM531974)
Human Normal Liver Tissue Sample 1. (liver)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
.........................................................................................AAGTCTGCGGCACGGAGCACTGC..........................................................................................................................................23116.0016.009.004.001.00----------------------------------------1.001.00--------------------
.........................................................................................AAGTCTGCGGCACGGAGCACTGA..........................................................................................................................................23111.007.005.002.00-1.00-1.00-1.00-----------------1.00---------------------------------------
.........................................................................................AAGTCTGCGGCACGGAGCACTG...........................................................................................................................................2217.007.001.003.00-----1.00---------------------1.00----------------1.00------------------
.........................................................................................AAGTCTGCGGCACGGAGCACTGCTAG.......................................................................................................................................2616.006.002.002.00-----1.00----------------------------------------------------1.00----
.........................................................................................AAGTCTGCGGCACGGAGCACT............................................................................................................................................2114.004.00------------1.00-----------------------------------------1.00-1.00----1.00---
.........................................................................................AAGTCTGCGGCACGGAGCACTGCTAT.......................................................................................................................................2614.003.004.00----------------------------------------------------------------
.........................................................................................AAGTCTGCGGCACGGAGCACTGCTA........................................................................................................................................2513.003.00------1.00------1.00-1.00-------------------------------------------------
...................................................................................................................TGTCGGATCTGCATCTCCAG...................................................................................................................2013.003.00--3.00--------------------------------------------------------------
....................................................................................TCGGGAAGTCTGCGGCACGGAGT...............................................................................................................................................2312.001.00--2.00--------------------------------------------------------------
....................................................................................TCGGGAAGTCTGCGGCACGGAGC...............................................................................................................................................2312.002.00---1.00--------------------------------------1.00----------------------
...................................................................TGGGTCCAGGGAGCGGGTCGG..................................................................................................................................................................2112.002.00-----------------2.00-----------------------------------------------
....................................................................................TCGGGAAGTCTGCGGCACGGA.................................................................................................................................................2112.002.00--1.00-----------------1.00--------------------------------------------
................................................................................CGGGTCGGGAAGTCTGCGGCACGGAGCACTGC..........................................................................................................................................3212.002.002.00----------------------------------------------------------------
........................................................................................GAAGTCTGCGGCACGGAGCACTGTTAT.......................................................................................................................................272.000.002.00----------------------------------------------------------------
.........................................................................................AAGTCTGCGGCACGGAGCACTGT..........................................................................................................................................2312.007.00-1.00-------------------------------------------------1.00-------------
..........................................................................................AGTCTGCGGCACGGAGCACTGC..........................................................................................................................................2212.002.002.00----------------------------------------------------------------
.........................................................................................AAGTCTGCGGCACGGAGCAC.............................................................................................................................................2012.002.002.00----------------------------------------------------------------
.........................................................................................AAGTCTGCGGCACGGAGCACTGCTAGT......................................................................................................................................2712.002.00------------1.00---------------1.00------------------------------------
.........................................................................................AAGTCTGCGGCACGGAGCACTGCTAGTGTCGGA................................................................................................................................3312.002.00-2.00---------------------------------------------------------------
.........................................................................................AAGTCTGCGGCACGGAGCA..............................................................................................................................................1912.002.00------1.00-----------------------------------------1.00----------------
.........................................................................................AAGTCTGCGGCACGGAGCACTGCT.........................................................................................................................................2412.002.00------1.00-------------------------1.00--------------------------------
.........................................................................................AAGTCTGCGGCACGGAGC...............................................................................................................................................1812.002.001.00--------------------------1.00-------------------------------------
........................................................................................................................................TCTGTGCTGCAGCTTCACTT..............................................................................................2012.002.00----------------1.00------------------------------1.00-----------------
........................................................................................................................................TCTGTGCTGCAGCTTCACTTT.............................................................................................2111.002.00-1.00---------------------------------------------------------------
..........................................................................................AGTCTGCGGCACGGAGCACTG...........................................................................................................................................2111.001.00----------------------------------------------------------1.00------
.........................................................................................AAGTCTGCGGCACGGAGCACTGTAAT.......................................................................................................................................2611.007.001.00----------------------------------------------------------------
......................................................................................................................................................................................................AACTCTGGCTGCTGCCGCCCTGGGTTCGGAC.....................311.000.00-----------------------------------------1.00-----------------------
....................................................................................................................................CAGCTCTGTGCTGCAGCTTCA.................................................................................................2111.001.00---------------1.00-------------------------------------------------
.....................TGAGAGAACAGGGTGAACA..................................................................................................................................................................................................................191.000.00---------------------------------------------------------1.00-------
..............................................................................................................GCTAGTGTCGGATCTGCATC........................................................................................................................2011.001.00--------1.00--------------------------------------------------------
....................................................................................TCGGGAAGTCTGCGGCACGGAG................................................................................................................................................2211.001.00--------------------------------------------------1.00--------------
.........................................................................................AAGTCTGCGGCACGGAGCACTGCTT........................................................................................................................................2511.002.00------------------------------1.00----------------------------------
.......................................................................................................................................................................................................ACTCTGGCTGCTGCCGCCCTGGGTCCGG.......................281.000.00--------------------------------------1.00--------------------------
................................................................................................................................................................................................CTGCCAAACTCTGGCTG.........................................1711.001.001.00----------------------------------------------------------------
...................................................................................................................................................................................................................................GCCGGCGGAAGGCCCGGGG....191.000.00-----1.00-----------------------------------------------------------
......................GAGAGAACAGGGTGGTATA.................................................................................................................................................................................................................191.000.00--------1.00--------------------------------------------------------
..........................................................................................AGTCTGCGGCACGGAGCAC.............................................................................................................................................1911.001.00----------------------------------------------------1.00------------
..............................................................................................................GCTAGTGTCGGATCTGCATA........................................................................................................................201.000.00--------1.00--------------------------------------------------------
...........................................................................................................................................................................................................................GGGTTCGGGCCGGCGGGG.............181.000.00---------------------------------------------1.00-------------------
............................................................................................................CTGCTAGTGTCGGATCTGC...........................................................................................................................1911.001.00--------------------------------------------------------------1.00--
.........................AGAACAGGGTGGCCGCT................................................................................................................................................................................................................1711.001.00---------------------1.00-------------------------------------------
..........AGAGAGCGCCCTGAGAGAACA...........................................................................................................................................................................................................................2111.001.00--------------------------1.00--------------------------------------
.........................................................................................AAGTCTGCGGCACGGAGCACTGCAT........................................................................................................................................2511.0016.001.00----------------------------------------------------------------
............................................................................................................................................................................TGGCTTCTCACCCGGCTCT...........................................................191.000.00----------------------------------1.00------------------------------
...................................................................................................................................CCAGCTCTGTGCTGCAGCTTCT.................................................................................................221.000.00----------------------1.00------------------------------------------
.................................................................................................................................................................................TCTCACCCGGGGTCTCTGCCA....................................................2111.001.00-------------------------------------------------1.00---------------
....................................................................................TCGGGAAGTCTGCGGC......................................................................................................................................................1611.001.00------------------1.00----------------------------------------------
.........................................................................................AAGTCTGCGGCACGGAGCACTGCCAG.......................................................................................................................................2611.0016.00--------------1.00--------------------------------------------------
....................................................................................TCGGGAAGTCTGCGGCACGGAGTTT.............................................................................................................................................2511.001.00-1.00---------------------------------------------------------------
........................................................................................................AGCACTGCTAGTGTCGGATCTGCATT........................................................................................................................261.000.00-----------------------------------------------------1.00-----------
.......................................................................................GGAAGTCTGCGGCACGGAGCACCG...........................................................................................................................................241.000.00--------------1.00--------------------------------------------------
......................................................................GTCCAGGGAGCGGGTCGG..................................................................................................................................................................1811.001.00---------------------------------------1.00-------------------------
.....................TGAGAGAACAGGGTGGCCGCTTGG.............................................................................................................................................................................................................2411.001.00--1.00--------------------------------------------------------------
.......................................................................................................................................CTCTGTGCTGCAGCTTCACTT..............................................................................................2111.001.00------------------------1.00----------------------------------------
...........................................................................................................................................................................................................................GGGTTCGGGCCGGCGGGGG............191.000.00-------------------------------------1.00---------------------------
...................................................................................GTCGGGAAGTCTGCGGCACGGAGCACTG...........................................................................................................................................2811.001.00--1.00--------------------------------------------------------------
....................................................................................TCGGGAAGTCTGCGGCACGGAGA...............................................................................................................................................2311.001.00-------------------------------1.00---------------------------------
......................................................................................GGGAAGTCTGCGGCACGGAGCAC.............................................................................................................................................2311.001.00-----------------------------------1.00-----------------------------
.....................TGAGAGAACAGGGTGGCCGCT................................................................................................................................................................................................................2111.001.00----1.00------------------------------------------------------------
........................................................................................GAAGTCTGCGGCACGGAGCAC.............................................................................................................................................2111.001.00----------------1.00------------------------------------------------
.........................................................................................AAGTCTGCGGCACGGAGCAAC............................................................................................................................................2111.002.00-1.00---------------------------------------------------------------
...........................................................................................................................................................................................................................GGGTTCGGGCCGGCGGGGT............191.000.00----------------------------------------1.00------------------------
.......CCCAGAGAGCGCCCTGAGAGAACAGGG........................................................................................................................................................................................................................2711.001.00---1.00-------------------------------------------------------------

Antisense strand
CCGCGTCCCCAGAGAGCGCCCTGAGAGAACAGGGTGGCCGCTTGGTCCAGGTGCGCGGGGTCGGGTCTGGGTCCAGGGAGCGGGTCGGGAAGTCTGCGGCACGGAGCACTGCTAGTGTCGGATCTGCATCTCCAGCTCTGTGCTGCAGCTTCACTTGCCCGCCCCCCACCACTGGCTTCTCACCCGGGGTCTCTGCCAAACTCTGGCTGCTGCCGCCCTGGGTTCGGGCCGGCGGAAGGCCCTGGGCGTG
........................................................................................((((.((((((((((((((...((....)).(((........))).))))))))))))))))))..................................................................................................
....................................................................................85.........................................................................160........................................................................................
SizePerfect hitTotal NormPerfect NormDRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR033724(GSM497069)
L428 cell line (L428). (B cell)		DRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)		SRR189784SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR015447(SRR015447)
nuclear small RNAs. (breast)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		SRR189786SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)		SRR040015(GSM532900)
G623T. (cervix)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)		GSM1105748AGO1(GSM1105748)
small RNA sequencing data. (ago1 hela)		SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR029124(GSM416753)
HeLa. (hela)		TAX577580(Rovira)
total RNA. (breast)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		DRR000562(DRX000320)
Isolation of RNA following immunoprecipitatio. (ago3 cell line)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR189787SRR343332(GSM796035)
"KSHV (HHV8), EBV (HHV-4)". (cell line)		SRR343333(GSM796036)
KSHV (HHV8). (cell line)		SRR033716(GSM497061)
Mentle Cell Lymphoma (MCL114). (B cell)		SRR038858(GSM458541)
MEL202. (cell line)		SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)		SRR040007(GSM532892)
G601T. (cervix)		SRR039636(GSM518473)
THP1_cyto_sRNAs. (cell line)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR040025(GSM532910)
G613T. (cervix)		SRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR038861(GSM458544)
MM466. (cell line)		SRR363676(GSM830253)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR038859(GSM458542)
MM386. (cell line)		SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)		DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		SRR015448(SRR015448)
cytoplasmic small RNAs. (breast)		SRR029126(GSM416755)
143B. (cell line)		GSM956925Ago2D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		SRR038857(GSM458540)
D20. (cell line)		GSM1105750AGO3(GSM1105750)
small RNA sequencing data. (ago3 hela)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR038863(GSM458546)
MM603. (cell line)		SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)		SRR033714(GSM497059)
Burkitt Lymphoma (BL134). (B cell)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR033723(GSM497068)
L1236 cell line (L1236). (B cell)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)		SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039611(GSM531974)
Human Normal Liver Tissue Sample 1. (liver)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
....................................................................................................................GCTGGAGATGCAGATCCGAC.................................................................................................................. 2013.003.00---------2.00---------------------------------------------1.00---------
..............................................................................................................................................................................GAGACCCCGGGTGAGAAGC......................................................... 1912.002.00---2.00-------------------------------------------------------------
....................................................................................................................................................................................................................GCCGGCCCGAACCCAGGGCGG................. 2112.002.00-----------2.00-----------------------------------------------------
.....................................................................................TCCGTGCCGCAGACTTCCCG................................................................................................................................................. 2012.002.00----2.00------------------------------------------------------------
....................................................................................................................................................................................................................................CCGGCGGAAGGCCCTGGAAA.. 202.000.00----------2.00------------------------------------------------------
................................................................................................................CTGGAGATGCAGATCCGACACTA................................................................................................................... 2311.001.00-------------1.00---------------------------------------------------
................................................................................................................................................................CCGGGTGAGAAGCCAGTGGTGGGGGGC............................................................... 2711.001.00------------------------------------1.00----------------------------
........................................ACCCCGCGCACCTGGACCAAG............................................................................................................................................................................................. 2111.001.00-1.00---------------------------------------------------------------
..................................................GTGCGCGGGGTCGGGGG....................................................................................................................................................................................... 171.000.00-----1.00-----------------------------------------------------------
......................................................................................................ATCCGACACTAGCAGTGCTCC............................................................................................................................... 2111.001.00---------------------------------------------------------------1.00-
....................................................................................................................GTCGGATCTGCATCTCCAGGC................................................................................................................. 211.000.00-----------------------------------------------------------1.00-----
...........................................................................................................................................................AGTGGTGGGGGGCGGGCA............................................................................. 1811.001.00-------------------1.00---------------------------------------------
..............................................................................................................................................................................................................CTGCTGCCGCCCTGGGGCA......................... 191.000.00---------------------------------1.00-------------------------------
.....................................................................................................................GCTGGAGATGCAGATCCGA.................................................................................................................. 1911.001.00-----------------------1.00-----------------------------------------
.....................................................................CCCGCTCCCTGGACC...................................................................................................................................................................... 1580.120.12----------------------------------------------------------------0.12