ID: uc001dlp.2_intron_3_0_chr1_86820543_r.3p
GENE: (13)
chr1:86820493-86820742-


(1)
BRAIN 		(3)
BREAST 		(7)
CELL-LINE 		(1)
CERVIX 		(4)
OTHER 		(7)
SKIN 		(1)
XRN.ip

Sense strand
AACATAACTTCTTTAAATTTAACCAGGAATTTAAAACTTCCATTTTAACAATATAACATTTTCTTGGTGTCTTTCTGTGTAAGAGTAGTAACATTTATACCTTCTCGTTGCTTGTGGTTGTTCTAACAATAAATTATATGGATTTCTTTGGAAGTTGATTGTGAAGAAAATGACTAAGAAAACTTTTTTTTTTCTTTTAGGTTGATGGAAATCACAATCTTCTGACAAAGCTTTCTCTGGAAGAGGAAAA
.......................................................(((((.....)))))........(((((((..(((.......)))...))).)))).....(((((....)))))........................................................................................................................
..................................................51..................................................................................135.................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR189782SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189784SRR189786SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR040040(GSM532925)
G612N. (cervix)		TAX577746(Rovira)
total RNA. (breast)		SRR191607(GSM715717)
192genomic small RNA (size selected RNA from . (breast)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189785SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)		TAX577745(Rovira)
total RNA. (breast)		SRR207119(GSM721081)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)
...............................................................................................................TTGTGGTTGTTCTAACCATG.......................................................................................................................2020.000.0020.00----------------------
...............................................................................................................TTGTGGTTGTTCTAACTATG.......................................................................................................................2018.000.0018.00----------------------
...............................................................................................................TTGTGGTTGTTCTAACCTTG.......................................................................................................................209.000.009.00----------------------
...............................................................................................................TTGTGGTTGTTCTAACCAAG.......................................................................................................................203.000.003.00----------------------
...............................................................................................................TTGTGGTTGTTCTAACTTTG.......................................................................................................................202.000.002.00----------------------
...........................................................................................................................................................................................TTTTTTCTTTTAGGTTGAGGG..........................................212.000.00-----2.00-----------------
...................................................................................AGTAGTAACATTTATACC.....................................................................................................................................................1812.002.00----------1.00--------1.00---
........................................................................................................................................................................................TTTTTTTTTCTTTTAGGTAGTT............................................222.000.00----2.00------------------
...................................................................................................................................................................................AAACTTTTTTTTTTCTTACAG..................................................212.000.00-1.001.00--------------------
..................................................................................................................................................................................AAAACTTTTTTTTTTCTTTCTA..................................................221.000.00-------1.00---------------
....................................................................................................................................................................................AACTTTTTTTTTTCTTTTACAA................................................221.000.00--1.00--------------------
..................................................................................................................................................................................AAAACTTTTTTTTTTCTTTAAT..................................................221.000.00-------1.00---------------
...............................................................................................................TTGTGGTTGTTCTAACCATT.......................................................................................................................201.000.001.00----------------------
....................................................................................................................................................................................AACTTTTTTTTTTCTTTTATTG................................................221.000.00-1.00---------------------
.....................................................................................................................................................................................................................ACAATCTTCTGACAAAGCTTTCTCTGGAAGAGGA...3411.001.00---------------------1.00-
...................................................................................................................................................................................AAACTTTTTTTTTTCTTATCT..................................................211.000.00-1.00---------------------
...................................................................................................................................................................................AAACTTTTTTTTTTCTTTTCACC................................................231.000.00---1.00-------------------
...........................................TTTAACAATATAACATTTCAG..........................................................................................................................................................................................211.000.001.00----------------------
...............................................................................................................TTGTGGTTGTTCTAACTGGG.......................................................................................................................201.000.001.00----------------------
...............................................................................................................TTGTGGTTGTTCTAATCAT........................................................................................................................191.000.001.00----------------------
...................................................................................................................................................................................AAACTTTTTTTTTTCTTTTACC.................................................221.000.00---1.00-------------------
...............................................................................TAAGAGTAGTAACATTTATACC.....................................................................................................................................................2211.001.00-----------------1.00-----
.....................................................................................................................................................................................ACTTTTTTTTTTCTTTTATCAG...............................................221.000.00--------1.00--------------
...........................................................................................................................................................................................TTTTTTCTTTTAGGTTGAGG...........................................201.000.00---------1.00-------------
.........................................................................................................................................................................................TTTTTTTTCTTTTAGGTTGGTT...........................................221.000.00------1.00----------------
...................................................................................................................................................................................AAACTTTTTTTTTTCTTTCCG..................................................211.000.00--1.00--------------------
................................................................TGGTGTCTTTCTGTGAATG.......................................................................................................................................................................191.000.00------1.00----------------
.................................................................................................................................................................................................................AATCACAATCTTCTGACAAAG....................2111.001.001.00----------------------
..........................................................................CTGTGTAAGAGTAGTAACATTTATACC.....................................................................................................................................................2711.001.00--------------1.00--------
.....................................................................................................................................................................................ACTTTTTTTTTTCTTTTATTG................................................211.000.00--------1.00--------------
.......................................................................................................................................................................................TTTTTTTTTTCTTTTAGGTGAGG............................................231.000.00---1.00-------------------
....TAACTTCTTTAAATTAAG....................................................................................................................................................................................................................................181.000.00---------------1.00-------
....................................CTTCCATTTTAACAACACT...................................................................................................................................................................................................191.000.00-------------1.00---------
...............................................................................................................TTGTGGTTGTTCTAACCTAG.......................................................................................................................201.000.001.00----------------------
..................................................................................................................................................TTTGGAAGTTGATTGTCA......................................................................................181.000.00--------------------1.00--
.........................................................................................................................................................................ATGACTAAGAAAACTTTTTTT............................................................2111.001.00------------------1.00----
..................................................................................................................................................................................AAAACTTTTTTTTTTCTTTGTT..................................................221.000.00-1.00---------------------
.....................................................................................................................................................................................ACTTTTTTTTTTCTTTTAGGTTGACGG..........................................271.000.00----1.00------------------
...............................................................................................................TTGTGGTTGTTCTAAACAT........................................................................................................................191.000.001.00----------------------
...........................................................................................................................................GGATTTCTTTGGAAGCCC.............................................................................................181.000.00-----------1.00-----------
.............................................................................TGTAAGAGTAGTAACATTTATACC.....................................................................................................................................................2411.001.00----------------1.00------
.....................................................................................TAGTAACATTTATACC.....................................................................................................................................................1620.500.50----------------------0.50
...................................................................................................................................................................................AAACTTTTTTTTTTCTTTTAG..................................................2120.500.50--0.50--------------------
........................................................CATTTTCTTGGTGTCTTT................................................................................................................................................................................1830.330.33---------0.33-------------
.....................................................................................................................................................................................ACTTTTTTTTTTCTTTTAGG.................................................2050.200.20---0.20-------------------
....................................................................................................................................................................................AACTTTTTTTTTTCTTTTAG..................................................2090.110.11--0.11--------------------

Antisense strand
AACATAACTTCTTTAAATTTAACCAGGAATTTAAAACTTCCATTTTAACAATATAACATTTTCTTGGTGTCTTTCTGTGTAAGAGTAGTAACATTTATACCTTCTCGTTGCTTGTGGTTGTTCTAACAATAAATTATATGGATTTCTTTGGAAGTTGATTGTGAAGAAAATGACTAAGAAAACTTTTTTTTTTCTTTTAGGTTGATGGAAATCACAATCTTCTGACAAAGCTTTCTCTGGAAGAGGAAAA
.......................................................(((((.....)))))........(((((((..(((.......)))...))).)))).....(((((....)))))........................................................................................................................
..................................................51..................................................................................135.................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR189782SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189784SRR189786SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR040040(GSM532925)
G612N. (cervix)		TAX577746(Rovira)
total RNA. (breast)		SRR191607(GSM715717)
192genomic small RNA (size selected RNA from . (breast)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189785SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)		TAX577745(Rovira)
total RNA. (breast)		SRR207119(GSM721081)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)
...............................................................................................................................................................................................................GAAATCACAATCTTCTGATGG...................... 211.000.00------------1.00----------