ID: uc001dlm.1_intron_3_0_chr1_86820543_r
GENE: (14)
chr1:86820493-86821077-


(1)
BRAIN
(3)
BREAST
(10)
CELL-LINE
(1)
CERVIX
(1)
HEART
(1)
LIVER
(4)
OTHER
(9)
SKIN
(1)
UTERUS
(1)
XRN.ip

Sense strand
ATTTAGAGCAGATTTTGAAGCAGTGGGAAGAATATTCTGTCTTGGCATGGGTGAGTGTGTCTTTGGTTGATTTGTTCACTTTGCTTCTCAAAAAAATATGTATTTTATTTACAGTTTCGACTTCACAGATACTCAATTATTAATCAGTATTTTTAGGTGAAACAGAAAACCATAAGAGAAACCCTAGGTATCCAAAAATAGGAGATTAATACTGCTTAAAATTTTCCTATTTCAACTTAACAAAATAAATATCTTTCTTCAATAAGGTGTTGTTCAAAGTGTTTTAATAGCCATCATCCTGAATTTTTTTTAGTTGGTTATTTTCCAATACAGGCAACATAACTTCTTTAAATTTAACCAGGAATTTAAAACTTCCATTTTAACAATATAACATTTTCTTGGTGTCTTTCTGTGTAAGAGTAGTAACATTTATACCTTCTCGTTGCTTGTGGTTGTTCTAACAATAAATTATATGGATTTCTTTGGAAGTTGATTGTGAAGAAAATGACTAAGAAAACTTTTTTTTTTCTTTTAGGTTGATGGAAATCACAATCTTCTGACAAAGCTTTCTCTGGAAGAGGAAAA
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................(((((.((((.......((.((((((....)))))).))...((((((((.....(((....)))....))))))))...)))).)))))........................................
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................442....................................................................................................545......................................
SizePerfect hitTotal NormPerfect NormSRR189782SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)
SRR189784SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR037936(GSM510474)
293cand1. (cell line)
SRR189786SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR040040(GSM532925)
G612N. (cervix)
SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)
TAX577746(Rovira)
total RNA. (breast)
SRR191607(GSM715717)
192genomic small RNA (size selected RNA from . (breast)
SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR189785SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR060168(GSM565978)
5-8F_nucleus. (cell line)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)
TAX577745(Rovira)
total RNA. (breast)
SRR207119(GSM721081)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTGGTTGTTCTAACCATG.......................................................................................................................2020.000.0020.00------------------------------
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTGGTTGTTCTAACTATG.......................................................................................................................2018.000.0018.00------------------------------
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTGGTTGTTCTAACCTTG.......................................................................................................................209.000.009.00------------------------------
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTGGTTGTTCTAACCAAG.......................................................................................................................203.000.003.00------------------------------
......................................................................................................................................................................AAACCATAAGAGAAACCCTAGGTATCCAAAAAT..................................................................................................................................................................................................................................................................................................................................................................................................3312.002.00-------2.00-----------------------
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTGGTTGTTCTAACTTTG.......................................................................................................................202.000.002.00------------------------------
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTTTCTTTTAGGTTGAGGG..........................................212.000.00--2.00----------------------------
..................................................................................................................................................................................................................................................................................................................................................................................................................................AGTAGTAACATTTATACC.....................................................................................................................................................1812.002.00------------1.00--------------1.00---
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTTTTTTCTTTTAGGTAGTT............................................222.000.00------2.00------------------------
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACTTTTTTTTTTCTTACAG..................................................212.000.00---1.001.00--------------------------
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAACTTTTTTTTTTCTTTCTA..................................................221.000.00---------1.00---------------------
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTTTTTTTTTTCTTTTACAA................................................221.000.00----1.00--------------------------
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAACTTTTTTTTTTCTTTAAT..................................................221.000.00---------1.00---------------------
..............................................................................................................................................................................................................................................................................................................................................CAACATAACTTCTTTATAAG.......................................................................................................................................................................................................................................201.000.00--1.00----------------------------
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTGGTTGTTCTAACCATT.......................................................................................................................201.000.001.00------------------------------
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTTTTTTTTTTCTTTTATTG................................................221.000.00---1.00---------------------------
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAATCTTCTGACAAAGCTTTCTCTGGAAGAGGA...3411.001.00-----------------------------1.00-
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACTTTTTTTTTTCTTATCT..................................................211.000.00---1.00---------------------------
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACTTTTTTTTTTCTTTTCACC................................................231.000.00-----1.00-------------------------
..............................................ATGGGTGAGTGTGTCTTTGGT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001.00-------------------1.00-----------
..........................................................................................................................................................................................................................................................................................................................................................................................TTTAACAATATAACATTTCAG..........................................................................................................................................................................................211.000.001.00------------------------------
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTGGTTGTTCTAACTGGG.......................................................................................................................201.000.001.00------------------------------
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTGGTTGTTCTAATCAT........................................................................................................................191.000.001.00------------------------------
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACTTTTTTTTTTCTTTTACC.................................................221.000.00-----1.00-------------------------
..............................................................................................................................................................................................................................................................................................................................................................................................................................TAAGAGTAGTAACATTTATACC.....................................................................................................................................................2211.001.00----------------------1.00--------
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTTTTTTTTTTCTTTTATCAG...............................................221.000.00----------1.00--------------------
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTTTCTTTTAGGTTGAGG...........................................201.000.00-----------1.00-------------------
........................................................GTGTCTTTGGTTGATGGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................181.000.00--------------1.00----------------
..............................................................................................................................................................................................................................................................................................................................................CAACATAACTTCTTTATTGG.......................................................................................................................................................................................................................................201.000.00--1.00----------------------------
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTTTTTCTTTTAGGTTGGTT...........................................221.000.00--------1.00----------------------
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACTTTTTTTTTTCTTTCCG..................................................211.000.00----1.00--------------------------
...............................................................................................................................................................................................................................................................................................................................................................................................................TGGTGTCTTTCTGTGAATG.......................................................................................................................................................................191.000.00--------1.00----------------------
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATCACAATCTTCTGACAAAG....................2111.001.001.00------------------------------
.........................................................................................................................................................................................................................................................................................................................................................................................................................CTGTGTAAGAGTAGTAACATTTATACC.....................................................................................................................................................2711.001.00------------------1.00------------
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTTTTTTTTTTCTTTTATTG................................................211.000.00----------1.00--------------------
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTTTTTTTCTTTTAGGTGAGG............................................231.000.00-----1.00-------------------------
...................................................................................................................................................................................................................................................................................................................................................TAACTTCTTTAAATTAAG....................................................................................................................................................................................................................................181.000.00--------------------1.00----------
...................................................................................................................................................................................................................................................................................................................................................................................CTTCCATTTTAACAACACT...................................................................................................................................................................................................191.000.00-----------------1.00-------------
...........................................................................................................................................................................ATAAGAGAAACCCTAGGTATCCA.......................................................................................................................................................................................................................................................................................................................................................................................................2311.001.00------------------------1.00------
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTGGTTGTTCTAACCTAG.......................................................................................................................201.000.001.00------------------------------
......................................................................................................TTTTATTTACAGTTTCTTGT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................201.000.00---1.00---------------------------
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGGAAGTTGATTGTCA......................................................................................181.000.00----------------------------1.00--
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGACTAAGAAAACTTTTTTT............................................................2111.001.00--------------------------1.00----
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAACTTTTTTTTTTCTTTGTT..................................................221.000.00---1.00---------------------------
..................................................................................................TGTATTTTATTTACACACA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................191.000.00---1.00---------------------------
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTTTTTTTTTTCTTTTAGGTTGACGG..........................................271.000.00------1.00------------------------
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTGGTTGTTCTAAACAT........................................................................................................................191.000.001.00------------------------------
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATTTCTTTGGAAGCCC.............................................................................................181.000.00-------------1.00-----------------
................................TATTCTGTCTTGGCATGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001.00---------------1.00---------------
............................................................................................................................................................................................................................................................................................................................................................................................................................TGTAAGAGTAGTAACATTTATACC.....................................................................................................................................................2411.001.00---------------------1.00---------
....................................................................................................................................................................................................................................................................................................................................................................................................................................TAGTAACATTTATACC.....................................................................................................................................................1620.500.50------------------------------0.50
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACTTTTTTTTTTCTTTTAG..................................................2120.500.50----0.50--------------------------
.......................................................................................................................................................................................................................................................................................................................................................................................................CATTTTCTTGGTGTCTTT................................................................................................................................................................................1830.330.33-----------0.33-------------------
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTTTTTTTTTTCTTTTAGG.................................................2050.200.20-----0.20-------------------------
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTTTTTTTTTTCTTTTAG..................................................2090.110.11----0.11--------------------------

Antisense strand
ATTTAGAGCAGATTTTGAAGCAGTGGGAAGAATATTCTGTCTTGGCATGGGTGAGTGTGTCTTTGGTTGATTTGTTCACTTTGCTTCTCAAAAAAATATGTATTTTATTTACAGTTTCGACTTCACAGATACTCAATTATTAATCAGTATTTTTAGGTGAAACAGAAAACCATAAGAGAAACCCTAGGTATCCAAAAATAGGAGATTAATACTGCTTAAAATTTTCCTATTTCAACTTAACAAAATAAATATCTTTCTTCAATAAGGTGTTGTTCAAAGTGTTTTAATAGCCATCATCCTGAATTTTTTTTAGTTGGTTATTTTCCAATACAGGCAACATAACTTCTTTAAATTTAACCAGGAATTTAAAACTTCCATTTTAACAATATAACATTTTCTTGGTGTCTTTCTGTGTAAGAGTAGTAACATTTATACCTTCTCGTTGCTTGTGGTTGTTCTAACAATAAATTATATGGATTTCTTTGGAAGTTGATTGTGAAGAAAATGACTAAGAAAACTTTTTTTTTTCTTTTAGGTTGATGGAAATCACAATCTTCTGACAAAGCTTTCTCTGGAAGAGGAAAA
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................(((((.((((.......((.((((((....)))))).))...((((((((.....(((....)))....))))))))...)))).)))))........................................
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................442....................................................................................................545......................................
SizePerfect hitTotal NormPerfect NormSRR189782SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)
SRR189784SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR037936(GSM510474)
293cand1. (cell line)
SRR189786SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR040040(GSM532925)
G612N. (cervix)
SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)
TAX577746(Rovira)
total RNA. (breast)
SRR191607(GSM715717)
192genomic small RNA (size selected RNA from . (breast)
SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR189785SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR060168(GSM565978)
5-8F_nucleus. (cell line)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)
TAX577745(Rovira)
total RNA. (breast)
SRR207119(GSM721081)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)
.....................................................................................................................................................................................................................................................................ATAAGGTGTTGTTCAAAC.................................................................................................................................................................................................................................................................................................................. 188.000.00-8.00-----------------------------
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAATCACAATCTTCTGATGG...................... 211.000.00----------------1.00--------------
..............................................................................................................................................................................................................................................................................................................ATTTTTTTTAGTTGGCTCT........................................................................................................................................................................................................................................................................ 191.000.00--1.00----------------------------
.........................................................................................AAAAAAATATGTATTTATC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. 191.000.00---1.00---------------------------
.............................................................................ACTTTGCTTCTCAAAATGG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 191.000.00--1.00----------------------------
...............................................................................................................................................................................................................................................................................GTTCAAAGTGTTTTAATCTG...................................................................................................................................................................................................................................................................................................... 201.000.00-------------------------1.00-----
.......................................................TGTGTCTTTGGTTGAAAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ 181.000.00-----------------------1.00-------
................................................GGGTGAGTGTGTCTTTCCC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 191.000.00--1.00----------------------------