ID: uc001dle.2_intron_3_0_chr1_86048308_f
GENE: (4)
chr1:86048258-86048472+


(1)
BRAIN 		(15)
BREAST 		(10)
CELL-LINE 		(5)
CERVIX 		(2)
FIBROBLAST 		(6)
HEART 		(14)
HELA 		(6)
LIVER 		(2)
OTHER 		(2)
RRP40.ip 		(12)
SKIN 		(2)
XRN.ip

Sense strand
GGATTTGTGAGGTGCGGCCTTGTGGACAGCCAGTGTACAGCAGCCTGAAAGTAAGTTCCTTCAGGGACGTGTAGACTGTTGCCTGGCAGGTGGGTGGGATGTGAACATCTTTTTGAAGAAAGAGAAATATCACCCCTAACTTTCCTTCTCTCCTTTCTCTTACAGAAGGGCAAGAAATGCAGCAAGACCAAGAAATCCCCCGAACCAGTCAGGTT
.........................................................(((((((((((((....)).))).))))).)))((((.(((((((.....((((((....))))))...))))).)))))).............................................................................
........................................................57...................................................................................................158.......................................................
SizePerfect hitTotal NormPerfect NormDRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		TAX577741(Rovira)
total RNA. (breast)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR207118(GSM721080)
RRP40 knockdown. (RRP40 cell line)		SRR029124(GSM416753)
HeLa. (hela)		TAX577579(Rovira)
total RNA. (breast)		DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		GSM359174(GSM359174)
hela_5_1. (hela)		GSM359175(GSM359175)
hela_5_pct. (hela)		GSM359173(GSM359173)
hela_10_1. (hela)		SRR207117(GSM721079)
Whole cell RNA. (cell line)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		TAX577746(Rovira)
total RNA. (breast)		TAX577739(Rovira)
total RNA. (breast)		GSM359177(GSM359177)
hela_nucl_a. (hela)		TAX577580(Rovira)
total RNA. (breast)		TAX577588(Rovira)
total RNA. (breast)		TAX577744(Rovira)
total RNA. (breast)		TAX577589(Rovira)
total RNA. (breast)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		DRR001487(DRX001041)
"Hela long nuclear cell fraction, LNA(+)". (hela)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		GSM359176(GSM359176)
hela_chip_smrna_pure. (hela)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		DRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)		TAX577743(Rovira)
total RNA. (breast)		SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		SRR038854(GSM458537)
MM653. (cell line)		TAX577590(Rovira)
total RNA. (breast)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		DRR001483(DRX001037)
"Hela long cytoplasmic cell fraction, control. (hela)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		GSM359181(GSM359181)
hela_phil_smrna_nuc. (hela)		TAX577738(Rovira)
total RNA. (breast)		SRR363674(GSM830251)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		GSM359203(GSM359203)
hepg2_untreated_b. (cell line)		SRR207119(GSM721081)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		DRR001482(DRX001036)
"Hela long total cell fraction, control". (hela)		SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189784SRR330857(SRX091695)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)		SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		GSM532880(GSM532880)
G659T. (cervix)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		TAX577740(Rovira)
total RNA. (breast)		SRR189785SRR040008(GSM532893)
G727N. (cervix)		SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR191539(GSM715649)
61genomic small RNA (size selected RNA from t. (breast)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR363673(GSM830250)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR040035(GSM532920)
G001T. (cervix)		TAX577745(Rovira)
total RNA. (breast)		GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR040018(GSM532903)
G701N. (cervix)		SRR040011(GSM532896)
G529T. (cervix)		SRR191620(GSM715730)
167genomic small RNA (size selected RNA from . (breast)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)
..................................................................................................................................CACCCCTAACTTTCCTTCTCTCCTTTCTCTTACAG..................................................35124.0024.00-4.00----2.00------3.003.00-2.002.002.002.00--------1.00---1.00----1.00---------------------------1.00-------
...................................................................................................................................ACCCCTAACTTTCCTTCTCTCCTTTCTCTTACAG..................................................34112.0012.00-6.00----3.00-------1.00-1.00-----------1.00--------------------------------------------
..................................................................................................................................CACCCCTAACTTTCCTTCTCTCCT.............................................................24112.0012.00----5.00------2.00--------1.002.00-----------1.00-----------1.00---------------------------
..................................................GTAAGTTCCTTCAGGGACGTGTAGAC...........................................................................................................................................26110.0010.00--------2.001.00-----4.00---------1.00----------2.00------------------------------------
.................................................................................................................................TCACCCCTAACTTTCCTTCTCTCCT.............................................................2517.007.00----2.00------2.00--------------------------------------------1.00-1.00---1.00----------
..................................................................................................................................CACCCCTAACTTTCCTTCTCTCCTTT...........................................................2617.007.00--------2.001.003.00----1.00---------------------------------------------------------
...................................................................................................................................ACCCCTAACTTTCCTTCTCTCCT.............................................................2316.006.00----2.00---------------1.001.00--1.00-------------1.00----------------------------------
.............................................................CAGGGACGTGTAGACTGT........................................................................................................................................1816.006.004.00--2.00---------------------------------------------------------------------
..................................................GTAAGTTCCTTCAGGGACGTGTAGA............................................................................................................................................2515.005.00--------1.001.001.00--------------2.00-----------------------------------------------
..................................................GTAAGTTCCTTCAGGGACGTGTAGACTGTTGCCTGGCAGGTGGGTGGGATGTGAACATCTTTTTGAAGAAAGAGAAATATCACCC................................................................................8514.004.00-------4.00-----------------------------------------------------------------
.................................................................................................................................TCACCCCTAACTTTCCTTCTCTCCTTTCTCTTACAG..................................................3614.004.00-1.00------------1.00---1.00------------------1.00-----------------------------------
........................................................TCCTTCAGGGACGTGTAGACT..........................................................................................................................................2114.004.00--4.00----------------------------------------------------------------------
..................................................GTAAGTTCCTTCAGGGACGTGTAGACTGTTG......................................................................................................................................3113.003.00--------------------1.00------------------2.00---------------------------------
.................................................................................................................................TCACCCCTAACTTTCCTTCTCTCCTT............................................................2613.003.00--------1.001.00--------------1.00------------------------------------------------
...................................................................................TGGCAGGTGGGTGGGATGTG................................................................................................................2013.003.00--3.00----------------------------------------------------------------------
..................................................GTAAGTTCCTTCAGGGACGTGTAGACTGTTGCCTGGCAGGTGGGTGGGATGTGAACATCTTTTTGAAGAAA..............................................................................................7113.003.00---------------------------3.00---------------------------------------------
...............................................................................................................................................................................AATGCAGCAAGACCAAGAAATCCC................2413.003.00------------3.00------------------------------------------------------------
..............CGGCCTTGTGGACAGCCAGTGTACAGC..............................................................................................................................................................................2712.002.002.00------------------------------------------------------------------------
.........................................................CCTTCAGGGACGTGTAGACTGTTGCCTGGCAGGTGGGTGGGATGTGAACATCTTTTTGAAGAAAGAGAAATATCACCCCTAACTTTCCTTCTCTCCTTTCTCTTACAGA.................................................10912.002.00-------2.00-----------------------------------------------------------------
.....................................................................................................................................................................AAGGGCAAGAAATGCAGCAAGAC...........................2312.002.00--2.00----------------------------------------------------------------------
.....................................................................................................................................................................AAGGGCAAGAAATGCAGCA...............................1912.002.00-------------------------------2.00-----------------------------------------
..................................................................................................................................CACCCCTAACTTTCCTTCTCTCCTTTCTCTTCCAG..................................................352.000.00-------------1.00--1.00--------------------------------------------------------
......................................................................................................................................CCTAACTTTCCTTCTCTCCT.............................................................2012.002.00--------------------1.001.00---------------------------------------------------
...............................................................GGGACGTGTAGACTGTTGCCTGGC................................................................................................................................2412.002.002.00------------------------------------------------------------------------
...................................................................................................................................ACCCCTAACTTTCCTTCTCTCCTTTC..........................................................2612.002.00---------1.001.00--------------------------------------------------------------
..................................................................................................................................CACCCCTAACTTTCCTTCTCTCCTTTCTCTTACCG..................................................3512.001.00-1.00----1.00------------------------------------------------------------------
..............................................................................................................................................................................AAATGCAGCAAGACCAAGAAATCCC................2512.002.00----------------------2.00--------------------------------------------------
...........................................................TTCAGGGACGTGTAGACTGTTGCC....................................................................................................................................2412.002.002.00------------------------------------------------------------------------
..................................................................................................................................................TCTCTCCTTTCTCTTACAG..................................................1921.501.50-----------------------------------------0.50---------------------------0.50--0.50
.....TGTGAGGTGCGGCCTTGTGGACAG..........................................................................................................................................................................................2411.001.00--1.00----------------------------------------------------------------------
..................................................................................................................................................................CAGAAGGGCAAGAAATGC...................................1811.001.001.00------------------------------------------------------------------------
..................................................................................................................................CACCCCTAACTTTCCTTCTCTCCTTTCTCTTACAT..................................................3511.001.00------1.00------------------------------------------------------------------
...................................................................................................................................................CTCTCCTTTCTCTTACAG..................................................1821.001.00-----0.50----------------------------------------------------------------0.50--
..................................................................ACGTGTAGACTGTTGCCTGGCAGGTGGGTGG......................................................................................................................3111.001.00-------------1.00-----------------------------------------------------------
...................................................TAAGTTCCTTCAGGGACGTGTAGACT..........................................................................................................................................2611.001.00---1.00---------------------------------------------------------------------
...........GTGCGGCCTTGTGGACAGCCAGTGTACAAC..............................................................................................................................................................................301.000.001.00------------------------------------------------------------------------
.............GCGGCCTTGTGGACAGCC........................................................................................................................................................................................1811.001.00-----------------------1.00-------------------------------------------------
...............................................AAAGTAAGTTCCTTCAGGGACGTGTAGACTGTTGC.....................................................................................................................................3511.001.001.00------------------------------------------------------------------------
.............GCGGCCTTGTGGACAGCCA.......................................................................................................................................................................................1911.001.00-------------------------------------------------1.00-----------------------
...................................................................................................................................ACCCCTAACTTTCCTTCTCTCCTTTCTCTTACA...................................................3311.001.00---1.00---------------------------------------------------------------------
.....................................................................TGTAGACTGTTGCCTGGC................................................................................................................................1811.001.00---1.00---------------------------------------------------------------------
.......................................................TTCCTTCAGGGACGTGTAGACTGTT.......................................................................................................................................2511.001.00---------------------------------------------------1.00---------------------
............................................................TCAGGGACGTGTAGACTG.........................................................................................................................................1811.001.001.00------------------------------------------------------------------------
..................................................GTAAGTTCCTTCAGGGACGTGTAGACTGTTGCCTGGCAGGTGGGTGGGATGT.................................................................................................................5211.001.00-------1.00-----------------------------------------------------------------
.........................................................CCTTCAGGGACGTGTAGACTGTTGCCTGGC................................................................................................................................3011.001.00--------------------------------------1.00----------------------------------
..................................GTACAGCAGCCTGAAAGTAAGTTCC............................................................................................................................................................2511.001.00---------------------------------1.00---------------------------------------
..................................................................................................................................CACCCCTAACTTTCCTTCTCTCCTTTCTCTTACA...................................................3411.001.00-1.00-----------------------------------------------------------------------
.................CCTTGTGGACAGCCAGTG....................................................................................................................................................................................1811.001.00---1.00---------------------------------------------------------------------
...................................................................................................................................ACCCCTAACTTTCCTTCTCTCTT.............................................................2311.001.00----1.00--------------------------------------------------------------------
....................................................AAGTTCCTTCAGGGACGTGTAGACTGTTGCCTGGCAGGTGGGTGGGATGTGAACATCTTTTTGAAGAAAGAGAAATATCACCCCTAACTTTCCTTCTCTCCTTT...........................................................10411.001.00-----------------------1.00-------------------------------------------------
......GTGAGGTGCGGCCTTGTGGACAGCC........................................................................................................................................................................................2511.001.00--1.00----------------------------------------------------------------------
.....................GTGGACAGCCAGTGTACA................................................................................................................................................................................1811.001.00------------1.00------------------------------------------------------------
...................................................................................................................................ACCCCTAACTTTCCTTCTCTCCTTT...........................................................2511.001.00---------1.00---------------------------------------------------------------
..................................................................................................................................CACCCCTAACTTTCCTTCTCTCC..............................................................2311.001.00-----1.00-------------------------------------------------------------------
.........AGGTGCGGCCTTGTGGAC............................................................................................................................................................................................1811.001.00------------------------1.00------------------------------------------------
..................................................GTAAGTTCCTTCAGGGACGTGTAGACTGTTGCCTGGCAGGTGGGTGGGATGTGAACATCTTTTTGAAGAAAGAGAAATATC....................................................................................8111.001.00-----------------------1.00-------------------------------------------------
.............................................................................................................................................................................GAAATGCAGCAAGACCAAGAAA....................2211.001.00----------------------1.00--------------------------------------------------
...................................................................................................................................................................................CAGCAAGACCAAGAAATCC.................1911.001.00--1.00----------------------------------------------------------------------
............................................................................................GGTGGGATGTGAACATCTTTTTGAAGAAAGA............................................................................................3111.001.00-----1.00-------------------------------------------------------------------
.................................................................................................................................TCACCCCTAACTTTCCTTCTCTCCTTTC..........................................................2811.001.00-----1.00-------------------------------------------------------------------
...............................................................................................................................................CCTTCTCTCCTTTCTCTTACAGAA................................................2411.001.00---------------------------------------------------------------1.00---------
..................................................................ACGTGTAGACTGTTGCCTGGC................................................................................................................................2111.001.00---1.00---------------------------------------------------------------------
...........................................................................................................................................CTTTCCTTCTCTCCTTTCTCTTACAGAAG...............................................2911.001.00-----1.00-------------------------------------------------------------------
.....................................CAGCAGCCTGAAAGTAAGTTCC............................................................................................................................................................2211.001.00------------------------------------------------1.00------------------------
....................TGTGGACAGCCAGTGTACAGCAGCCTG........................................................................................................................................................................2711.001.00-----------1.00-------------------------------------------------------------
....................TGTGGACAGCCAGTGTACAGCAGC...........................................................................................................................................................................2411.001.00----------------------------------------------------1.00--------------------
...................................................................................................................................ACCCCTAACTTTCCTTCTCTCCTTTCTCTTACCG..................................................341.000.00-----------------1.00-------------------------------------------------------
......................TGGACAGCCAGTGTACAGC..............................................................................................................................................................................1911.001.00------------------------------1.00------------------------------------------
........................................................................................................................................TAACTTTCCTTCTCTCCTTTCTCTTACAG..................................................2911.001.00------------------1.00------------------------------------------------------
.................................................................GACGTGTAGACTGTTGCCTGG.................................................................................................................................2111.001.00----------------------1.00--------------------------------------------------
...........................................................TTCAGGGACGTGTAGA............................................................................................................................................1611.001.00-------------------------------------------1.00-----------------------------
......................................................................................................................................................................AGGGCAAGAAATGCAGCA...............................1811.001.00-----------------------------------------------1.00-------------------------
...............................................................................................................................................CCTTCTCTCCTTTCTCTTACA...................................................2111.001.00-------------------------------------------------------------1.00-----------
......GTGAGGTGCGGCCTTGTGGACAGCCAG......................................................................................................................................................................................2711.001.00--1.00----------------------------------------------------------------------
........................................................................................................................................................................................AGACCAAGAAATCCCCCGAAC..........2111.001.00-----------------------------------1.00-------------------------------------
..............CGGCCTTGTGGACAGC.........................................................................................................................................................................................1611.001.00------------------------------------------------------------1.00------------
...................................................................................................................................ACCCCTAACTTTCCTTCTCTC...............................................................2111.001.00----1.00--------------------------------------------------------------------
..................................................................................................................................CACCCCTAACTTTCCTTCTCTCCTTTCTCTTTCAG..................................................351.000.00-1.00-----------------------------------------------------------------------
...................................................................................................................................ACCCCTAACTTTCCTTCTCTCCTTTCTCTTCCCG..................................................341.000.00-----------------1.00-------------------------------------------------------
......GTGAGGTGCGGCCTTGTGGACAGCCAGTGTACAGCA.............................................................................................................................................................................3611.001.00----------------------------------------1.00--------------------------------
......................TGGACAGCCAGTGTACAGCAGCCTGA.......................................................................................................................................................................2611.001.00------------1.00------------------------------------------------------------
..........................................................CTTCAGGGACGTGTAGACTGTTGCCTGGC................................................................................................................................2911.001.00---1.00---------------------------------------------------------------------
......GTGAGGTGCGGCCTTGTGGAC............................................................................................................................................................................................2111.001.00--1.00----------------------------------------------------------------------
...................................................................................................................................ACCCCTAACTTTCCTTCTCTCCTTTCTCTTACAGAA................................................3611.001.00------1.00------------------------------------------------------------------
...................................................................................................................................ACCCCTAACTTTCCTTCTCTCCTTTCTCTTTCAG..................................................341.000.00-1.00-----------------------------------------------------------------------
..............CGGCCTTGTGGACAGCCAGTG....................................................................................................................................................................................2111.001.00-----------------------------1.00-------------------------------------------
........................................................................................................................................TAACTTTCCTTCTCTCCTTTCTCTTCCAG..................................................291.000.00--------------------------------1.00----------------------------------------
.......................................GCAGCCTGAAAGTAAGTTCCT...........................................................................................................................................................2111.001.00-----1.00-------------------------------------------------------------------
............................................................................................GGTGGGATGTGAACATCTTTTTGAAGAAAGAGAAATATCACCCCTAACTTTCCTTCTCTCCTTTCTCTTACAG..................................................7311.001.00------------------------------------------1.00------------------------------
..................................................................................................................................CACCCCTAACTTTCCTTCTC.................................................................2011.001.00-----1.00-------------------------------------------------------------------
...................................................TAAGTTCCTTCAGGGACGTGTAGACTG.........................................................................................................................................2711.001.00-----------------------------------1.00-------------------------------------
..................................................GTAAGTTCCTTCAGGGACGTGTAGACTGTTGCCTGGCAGGTGGGTGGGATGTGAACATCTTTTTGAAGAAAG.............................................................................................7211.001.00----------------------------------1.00--------------------------------------
........GAGGTGCGGCCTTGTGGACAGCCAGTGTACAGCGG............................................................................................................................................................................351.000.00----------------------------------------1.00--------------------------------
..............CGGCCTTGTGGACAGCCAGTGTACAGCAG............................................................................................................................................................................2911.001.00-----------------------------------------1.00-------------------------------
......................TGGACAGCCAGTGTACAGCAGCCTCAAA.....................................................................................................................................................................281.000.00-----------------------------------------------------1.00-------------------
..................................................GTAAGTTCCTTCAGGGACGTGTAGACTGTTGCCTGGCAGGTGGGTGGGATGTGAACATCTTTTTGAAGAAAGAGAAATATCACCCCTAACTTTC.......................................................................9411.001.00----------------------------------1.00--------------------------------------
..........................................................CTTCAGGGACGTGTAGACTG.........................................................................................................................................2011.001.00---1.00---------------------------------------------------------------------
....................................................................................................................................................................................AGCAAGACCAAGAAATCCCCCGAACC.........2611.001.00----------------------------------------------1.00--------------------------
................................GTGTACAGCAGCCTGGGC.....................................................................................................................................................................181.000.00----------------------------------------------------------------1.00--------
.........................................................................................................................................................TTTCTCTTACAGAAGGGC............................................1811.001.001.00------------------------------------------------------------------------
....................................................................................................................................CCCCTAACTTTCCTTCTCTCCTTTCTCTTACAG..................................................3311.001.00------1.00------------------------------------------------------------------
..............................................................................TTGCCTGGCAGGTGGGTGG......................................................................................................................1911.001.00-------------------------------------------------------1.00-----------------
........................................CAGCCTGAAAGTAAGTTCCTTCAGGGACGTGTAGA............................................................................................................................................3511.001.001.00------------------------------------------------------------------------
..................................................GTAAGTTCCTTCAGGGACGTGTAGACTGTTGCCTGG.................................................................................................................................3611.001.00---1.00---------------------------------------------------------------------
......................................................................................................................................................................AGGGCAAGAAATGCAGCAAGACC..........................2311.001.00-----1.00-------------------------------------------------------------------
................................................................GGACGTGTAGACTGTTGCCTGGCAGGTGGGT........................................................................................................................3111.001.00----------------------------1.00--------------------------------------------
.............................................................................................................................................TTCCTTCTCTCCTTTCTCTTACAG..................................................2411.001.00-----1.00-------------------------------------------------------------------
......GTGAGGTGCGGCCTTGTGG..............................................................................................................................................................................................1911.001.00-----------------------------1.00-------------------------------------------
......................................................................GTAGACTGTTGCCTGGC................................................................................................................................1711.001.00---1.00---------------------------------------------------------------------
..................................................................................................................................CACCCCTAACTTTCCTTCTCTCCTTTCTCTTAC....................................................3311.001.00-1.00-----------------------------------------------------------------------
......................................................................................................................................CCTAACTTTCCTTCTCTCCTTTCTCTTACAG..................................................3111.001.00-------------------1.00-----------------------------------------------------
.........................................................................................GTGGGTGGGATGTGAACATCTTTTTGAAGAAAGAGAAATATCACCCCTAACTTTCCTTCTCTCCTTTCTCTTACA...................................................7511.001.00-----------------------1.00-------------------------------------------------
.........................................................CCTTCAGGGACGTGTAGACTGTTGCCTG..................................................................................................................................2811.001.00------------------------------1.00------------------------------------------
.....................GTGGACAGCCAGTGTACC................................................................................................................................................................................181.000.00--------------------------------------------------1.00----------------------
................GCCTTGTGGACAGCCAGTGTAC.................................................................................................................................................................................2211.001.00------------------------------------------------------------------1.00------
...........GTGCGGCCTTGTGGACAGCCAGTGTACAGC..............................................................................................................................................................................3011.001.001.00------------------------------------------------------------------------
....................................................................................................GTGAACATCTTTTTGAAGAAAGAG...........................................................................................2411.001.00-----1.00-------------------------------------------------------------------
........................................CAGCCTGAAAGTAAGTTCCTTCAGG......................................................................................................................................................2511.001.00---1.00---------------------------------------------------------------------
..................................................................................................................................CACCCCTAACTTTCCTTCTCTCCTTTCTCTTACAGA.................................................3611.001.00-------------------1.00-----------------------------------------------------
............TGCGGCCTTGTGGACAGC.........................................................................................................................................................................................1811.001.001.00------------------------------------------------------------------------
...................................................TAAGTTCCTTCAGGGACGTGTAGACTGTT.......................................................................................................................................2911.001.001.00------------------------------------------------------------------------
............................................................................................................................................TTTCCTTCTCTCCTTTCTCTTACAGA.................................................2611.001.00-----1.00-------------------------------------------------------------------
................................GTGTACAGCAGCCTGAAA.....................................................................................................................................................................1820.500.50--0.50----------------------------------------------------------------------
..............CGGCCTTGTGGACAG..........................................................................................................................................................................................1520.500.50-----------------------------------------------------------------------0.50-
.....................................................................................................................................................................AAGGGCAAGAAATGCAGC................................1820.500.50--------------------------------------------------------------------0.50----
..................................................................................................................................................................CAGAAGGGCAAGAAATG....................................1730.330.33--0.33----------------------------------------------------------------------

Antisense strand
GGATTTGTGAGGTGCGGCCTTGTGGACAGCCAGTGTACAGCAGCCTGAAAGTAAGTTCCTTCAGGGACGTGTAGACTGTTGCCTGGCAGGTGGGTGGGATGTGAACATCTTTTTGAAGAAAGAGAAATATCACCCCTAACTTTCCTTCTCTCCTTTCTCTTACAGAAGGGCAAGAAATGCAGCAAGACCAAGAAATCCCCCGAACCAGTCAGGTT
.........................................................(((((((((((((....)).))).))))).)))((((.(((((((.....((((((....))))))...))))).)))))).............................................................................
........................................................57...................................................................................................158.......................................................
SizePerfect hitTotal NormPerfect NormDRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		TAX577741(Rovira)
total RNA. (breast)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR207118(GSM721080)
RRP40 knockdown. (RRP40 cell line)		SRR029124(GSM416753)
HeLa. (hela)		TAX577579(Rovira)
total RNA. (breast)		DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		GSM359174(GSM359174)
hela_5_1. (hela)		GSM359175(GSM359175)
hela_5_pct. (hela)		GSM359173(GSM359173)
hela_10_1. (hela)		SRR207117(GSM721079)
Whole cell RNA. (cell line)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		TAX577746(Rovira)
total RNA. (breast)		TAX577739(Rovira)
total RNA. (breast)		GSM359177(GSM359177)
hela_nucl_a. (hela)		TAX577580(Rovira)
total RNA. (breast)		TAX577588(Rovira)
total RNA. (breast)		TAX577744(Rovira)
total RNA. (breast)		TAX577589(Rovira)
total RNA. (breast)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		DRR001487(DRX001041)
"Hela long nuclear cell fraction, LNA(+)". (hela)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		GSM359176(GSM359176)
hela_chip_smrna_pure. (hela)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		DRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)		TAX577743(Rovira)
total RNA. (breast)		SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		SRR038854(GSM458537)
MM653. (cell line)		TAX577590(Rovira)
total RNA. (breast)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		DRR001483(DRX001037)
"Hela long cytoplasmic cell fraction, control. (hela)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		GSM359181(GSM359181)
hela_phil_smrna_nuc. (hela)		TAX577738(Rovira)
total RNA. (breast)		SRR363674(GSM830251)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		GSM359203(GSM359203)
hepg2_untreated_b. (cell line)		SRR207119(GSM721081)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		DRR001482(DRX001036)
"Hela long total cell fraction, control". (hela)		SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189784SRR330857(SRX091695)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)		SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		GSM532880(GSM532880)
G659T. (cervix)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		TAX577740(Rovira)
total RNA. (breast)		SRR189785SRR040008(GSM532893)
G727N. (cervix)		SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR191539(GSM715649)
61genomic small RNA (size selected RNA from t. (breast)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR363673(GSM830250)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR040035(GSM532920)
G001T. (cervix)		TAX577745(Rovira)
total RNA. (breast)		GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR040018(GSM532903)
G701N. (cervix)		SRR040011(GSM532896)
G529T. (cervix)		SRR191620(GSM715730)
167genomic small RNA (size selected RNA from . (breast)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)
................................................................................................................................................................................................TGGTTCGGGGGATTT........ 1512.002.00---------------------------------------------------------1.00---------1.00-----
.........................................................................................GTGGGTGGGATGTGAACATCAG........................................................................................................ 221.000.00--------------------------------------------1.00----------------------------
....................................................................................................................................CCCCTAACTTTCCTTCACAG............................................................... 201.000.00------------------------------------------------------1.00------------------