ID: uc001dla.1_intron_0_0_chr1_85742481_f.5p
GENE: (1)
chr1:85742431-85742680+


(1)
AGO2.ip 		(7)
B-CELL 		(1)
BRAIN 		(7)
BREAST 		(16)
CELL-LINE 		(3)
HEART 		(3)
HELA 		(3)
LIVER 		(4)
OTHER 		(19)
SKIN 		(1)
XRN.ip

Sense strand
GCTCCGCCCACAGCGGGCGTTTCCTCAAGCCACGCCTGCGCAGGTCGTCGGTAAGTGGCCCGGGTTAGCTTCCTCATAAGGCATCGTTTCCGTGGGTGGGGTCCGTCAGTGCCCAGGCAGCTGGCACTCTCAGCCTTTGCTGCCTGCTCACTTCGGGGGAGTCCGGTCTGGGCTTGTCAGTACCTTGGGTTCCTCCCCTTTTCCCAGACCCTGCCCTACAATTTCCTGTTGTTACGTTTGCCAGTTACTG
.............................................................................................................((..((((((((.(((.......)))...))))))))..)).....((.((((((.....)))))).))........................................................................
.............................................................................................................110.......................................................................184................................................................
SizePerfect hitTotal NormPerfect NormSRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR033725(GSM497070)
Unmutated CLL (CLLU626). (B cell)		TAX577739(Rovira)
total RNA. (breast)		TAX577740(Rovira)
total RNA. (breast)		SRR033728(GSM497073)
MALT (MALT413). (B cell)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR033710(GSM497055)
GCB DLBCL (GCB385). (B cell)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR444048(SRX128896)
Sample 8cDNABarcode: AF-PP-333: ACG CTC TTC C. (skin)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)		SRR038852(GSM458535)
QF1160MB. (cell line)		SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)		GSM359173(GSM359173)
hela_10_1. (hela)		SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039191(GSM494810)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR191567(GSM715677)
46genomic small RNA (size selected RNA from t. (breast)		SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)		SRR191590(GSM715700)
48genomic small RNA (size selected RNA from t. (breast)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR444059(SRX128907)
Sample 17cDNABarcode: AF-PP-339: ACG CTC TTC . (skin)		SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189782SRR037937(GSM510475)
293cand2. (cell line)		SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)		SRR189785SRR033726(GSM497071)
Mututated CLL (CLLM633). (B cell)		SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR015447(SRR015447)
nuclear small RNAs. (breast)		SRR191597(GSM715707)
75genomic small RNA (size selected RNA from t. (breast)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		SRR444057(SRX128905)
Sample 15cDNABarcode: AF-PP-334: ACG CTC TTC . (skin)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191525(GSM715635)
121genomic small RNA (size selected RNA from . (breast)		DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR343335SRR029130(GSM416759)
DLD2. (cell line)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR039637(GSM518474)
THP1_total_sRNAs. (cell line)		SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)		SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		SRR015359(GSM380324)
Germinal Center B cell (GC136). (B cell)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR189787SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
..................................................................................................................AGGCAGCTGGCACTCTCAG.....................................................................................................................19122.0022.0011.00---2.001.002.00--2.00-1.00-----1.00-------1.00----1.00------------------------------------
...................................................................................................................................................................CGGTCTGGGCTTGTCAG......................................................................17111.0011.00-11.00-----------------------------------------------------------------
..................................................................................................................AGGCAGCTGGCACTCTCAGT....................................................................................................................2014.0022.00---4.00---------------------------------------------------------------
.....................................................................................................................................................ACTTCGGGGGAGTCCGGTCTGG...............................................................................2213.003.00--3.00----------------------------------------------------------------
..................................................................................................................................................................CCGGTCTGGGCTTGTCAGTA....................................................................2012.002.00------1.00----1.00-------------------------------------------------------
..................................................................................................................AGGCAGCTGGCACTCTCAGC....................................................................................................................2012.002.00------------------------------------------1.00-------------1.00----------
....................................................................................CGTTTCCGTGGGTGGGGTC...................................................................................................................................................1912.002.00-----------------------------------------1.00-1.00-----------------------
....................................................................................CGTTTCCGTGGGTGG.......................................................................................................................................................1522.002.00------------------0.50-----------------------------------------0.500.50-0.50---
.........................................................................................................................................................CGGGGGAGTCCGGTCTGG...............................................................................1812.002.00---------------2.00---------------------------------------------------
...................................................................................TCGTTTCCGTGGGTGGTGGT...................................................................................................................................................202.000.00--------1.00-----------------------------------1.00----------------------
...................................................................................TCGTTTCCGTGGGTG........................................................................................................................................................1512.002.00--------1.00-----1.00----------------------------------------------------
.......................................................................................................................................................TTCGGGGGAGTCCGGTCTGGG..............................................................................2112.002.00----------1.00-----------------------------------1.00--------------------
...........................................................................................GTGGGTGGGGTCCGTCAGTGCCCAGGC....................................................................................................................................2711.001.00-----------------------------------1.00-------------------------------
.................................GCCTGCGCAGGTCGTCGG.......................................................................................................................................................................................................1811.001.00-----------------------------------------------------1.00-------------
...............................................................................................................CCCAGGCAGCTGGCACTCT........................................................................................................................1911.001.00---------------------------------------------------------1.00---------
...................................................................................TCGTTTCCGTGGGTGGGGTCCGTCAG.............................................................................................................................................2611.001.00---------------------1.00---------------------------------------------
.............................................................................AAGGCATCGTTTCCGTGGGTG........................................................................................................................................................2111.001.00----------------1.00--------------------------------------------------
.................................................................................................................................................................TCCGGTCTGGGCTTGTAAA......................................................................191.000.00--1.00----------------------------------------------------------------
..................................................................................................................................................CTCACTTCGGGGGAGTCCGGT...................................................................................2111.001.00------------------------------------------------------1.00------------
........................................................................................TCCGTGGGTGGGGTCCGT................................................................................................................................................1811.001.00--------------------------1.00----------------------------------------
.......................................................................................................CGTCAGTGCCCAGGCAGCTGGCACTC.........................................................................................................................2611.001.00--------------------1.00----------------------------------------------
..................................................................................ATCGTTTCCGTGGGTGGGG.....................................................................................................................................................1911.001.00----------1.00--------------------------------------------------------
.................................................................................................................CAGGCAGCTGGCACTCTC.......................................................................................................................1811.001.00----------------------------------------------------1.00--------------
.................................................................................................................CAGGCAGCTGGCACTCTCAGCCTT.................................................................................................................2411.001.00----------------------------------------------------------1.00--------
.......................................................................................................................................................TTCGGGGGAGTCCGGT...................................................................................1611.001.00----------------------------1.00--------------------------------------
.................................................................................................................CAGGCAGCTGGCACTCTCAGCCTTTG...............................................................................................................2611.001.00-----1.00-------------------------------------------------------------
..............................................................................................................................................CCTGCTCACTTCGGGGGAGTC.......................................................................................2111.001.00--------------------------------------1.00----------------------------
........................................................................CTCATAAGGCATCGTTTCCG..............................................................................................................................................................2011.001.00-----1.00-------------------------------------------------------------
...............................................................................GGCATCGTTTCCGTGGGTG........................................................................................................................................................1911.001.00----------------1.00--------------------------------------------------
...................................................................................................................................AGCCTTTGCTGCCTGCTCACTTCGGA.............................................................................................261.000.00-------------------------------1.00-----------------------------------
.................................................................................................................................TCAGCCTTTGCTGCCTGCTCAT...................................................................................................221.000.00----1.00--------------------------------------------------------------
............................................................................................................................................TGCCTGCTCACTTCGGGGGAGT........................................................................................2211.001.00-------------------------------------------------------1.00-----------
....................................TGCGCAGGTCGTCGGTTCG...................................................................................................................................................................................................191.000.00------------------------------------1.00------------------------------
..................................................................................................................AGGCAGCTGGCACTCTCA......................................................................................................................1821.001.00----0.50---------------------------------------------------------0.50----
....................................TGCGCAGGTCGTCGGTAAG...................................................................................................................................................................................................1911.001.00-------------------1.00-----------------------------------------------
....................................................................................CGTTTCCGTGGGTGGTGG....................................................................................................................................................1821.002.00------------------1.00------------------------------------------------
...........................................................................................................................................................GGGGAGTCCGGTCTGGGCTTGTC........................................................................2311.001.00--------------------------------------------------1.00----------------
..........................................................................................CGTGGGTGGGGTCCGGGGG.............................................................................................................................................191.000.00-----------------------------------------------------------1.00-------
...................................................................................................................................................................CGGTCTGGGCTTGTCAA......................................................................171.000.00-----------------------------------------------1.00-------------------
..................................................................................................................AGGCAGCTGGCACTCTCAGCC...................................................................................................................2111.001.00-----------------1.00-------------------------------------------------
.............................................................................................................................................GCCTGCTCACTTCGGGGGAG.........................................................................................2011.001.00---------------------------------------------1.00---------------------
....................................TGCGCAGGTCGTCGG.......................................................................................................................................................................................................1511.001.00-------1.00-----------------------------------------------------------
...................................................................................TCGTTTCCGTGGGTGGTG.....................................................................................................................................................181.000.00-----------------------------1.00-------------------------------------
...............................................................................GGCATCGTTTCCGTGGG..........................................................................................................................................................1711.001.00------------------------------------------------1.00------------------
....................................................................................CGTTTCCGTGGGTGGTGGT...................................................................................................................................................1921.002.00----------------------------------1.00--------------------------------
.............................................................................................................................................................................................TTCCTCCCCTTTTCCCCTG..........................................191.000.00-------------------------------------------------1.00-----------------
.................................................................................................................................................................TCCGGTCTGGGCTTGTCAG......................................................................1911.001.00--------------------------------1.00----------------------------------
................................................................................................................CCAGGCAGCTGGCACTCT........................................................................................................................1811.001.00-----------------------1.00-------------------------------------------
............................................................................................................................................................................CTTGTCAGTACCTTGGGT............................................................1811.001.00--1.00----------------------------------------------------------------
.................................................................................................................CAGGCAGCTGGCACTCTCAG.....................................................................................................................2011.001.00----------------------1.00--------------------------------------------
...........................................GTCGTCGGTAAGTGGCC..............................................................................................................................................................................................1711.001.00-------1.00-----------------------------------------------------------
..............................................................................................................GCCCAGGCAGCTGGCACTCT........................................................................................................................2011.001.00----------------------------------------1.00--------------------------
............................................................................TAAGGCATCGTTTCCGTGGGTGGG......................................................................................................................................................2411.001.00---------------------------1.00---------------------------------------
..................................................................................................................................................CTCACTTCGGGGGAG.........................................................................................1520.500.50-------0.50-----------------------------------------------------------
.................................................................................................................................................................................CAGTACCTTGGGTTC..........................................................1540.250.25----------------------------------------------------------------0.25--

Antisense strand
GCTCCGCCCACAGCGGGCGTTTCCTCAAGCCACGCCTGCGCAGGTCGTCGGTAAGTGGCCCGGGTTAGCTTCCTCATAAGGCATCGTTTCCGTGGGTGGGGTCCGTCAGTGCCCAGGCAGCTGGCACTCTCAGCCTTTGCTGCCTGCTCACTTCGGGGGAGTCCGGTCTGGGCTTGTCAGTACCTTGGGTTCCTCCCCTTTTCCCAGACCCTGCCCTACAATTTCCTGTTGTTACGTTTGCCAGTTACTG
.............................................................................................................((..((((((((.(((.......)))...))))))))..)).....((.((((((.....)))))).))........................................................................
.............................................................................................................110.......................................................................184................................................................
SizePerfect hitTotal NormPerfect NormSRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR033725(GSM497070)
Unmutated CLL (CLLU626). (B cell)		TAX577739(Rovira)
total RNA. (breast)		TAX577740(Rovira)
total RNA. (breast)		SRR033728(GSM497073)
MALT (MALT413). (B cell)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR033710(GSM497055)
GCB DLBCL (GCB385). (B cell)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR444048(SRX128896)
Sample 8cDNABarcode: AF-PP-333: ACG CTC TTC C. (skin)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)		SRR038852(GSM458535)
QF1160MB. (cell line)		SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)		GSM359173(GSM359173)
hela_10_1. (hela)		SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039191(GSM494810)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR191567(GSM715677)
46genomic small RNA (size selected RNA from t. (breast)		SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)		SRR191590(GSM715700)
48genomic small RNA (size selected RNA from t. (breast)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR444059(SRX128907)
Sample 17cDNABarcode: AF-PP-339: ACG CTC TTC . (skin)		SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189782SRR037937(GSM510475)
293cand2. (cell line)		SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)		SRR189785SRR033726(GSM497071)
Mututated CLL (CLLM633). (B cell)		SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR015447(SRR015447)
nuclear small RNAs. (breast)		SRR191597(GSM715707)
75genomic small RNA (size selected RNA from t. (breast)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		SRR444057(SRX128905)
Sample 15cDNABarcode: AF-PP-334: ACG CTC TTC . (skin)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191525(GSM715635)
121genomic small RNA (size selected RNA from . (breast)		DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR343335SRR029130(GSM416759)
DLD2. (cell line)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR039637(GSM518474)
THP1_total_sRNAs. (cell line)		SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)		SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		SRR015359(GSM380324)
Germinal Center B cell (GC136). (B cell)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR189787SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
....................................................................................................................................CCCCCGAAGTGAGCAGGCAGCAAAGGC........................................................................................... 2713.003.00------------2.00--------------------------------------1.00---------------
.............................................................................................................................................................................................................................GTAACTGGCAAACGTAACAACAGGAAA.. 2712.002.00-------------2.00-----------------------------------------------------
............................................................................................................................CAGCAAAGGCTGAGAGTG............................................................................................................ 1811.001.00------------------------1.00------------------------------------------
...........................................................................................................................................................................GCTTGTCAGTACCTTGATGG........................................................... 201.000.00---------------------------------1.00---------------------------------
................................................................TTAGCTTCCTCATAAGAG........................................................................................................................................................................ 181.000.00-------------------------------------1.00-----------------------------
.......................................................................................TTCCGTGGGTGGGGTCCGTCACT............................................................................................................................................ 231.000.00---------------------------------------1.00---------------------------
...................................................................................................................................................................ACTGACAAGCCCAGACCG..................................................................... 1811.001.00--------------1.00----------------------------------------------------
...........................................................................................................................AAAGGCTGAGAGTGC................................................................................................................ 1590.110.11------------------------------------------------------------------0.11
...........................................................................................................................GCACTCTCAGCCTTTGAAA............................................................................................................ 190.110.00-----------------------------------------------------------------0.11-
...........................................................................................................................GCACTCTCAGCCTTTGA.............................................................................................................. 170.110.00-----------------------------------------------------------------0.11-