ID: uc001dkn.2_intron_5_0_chr1_85412763_r.5p
GENE: (6)
chr1:85417726-85417975-


(1)
BREAST 		(8)
CELL-LINE 		(1)
LIVER 		(1)
OTHER 		(1)
SKIN 		(3)
UTERUS 		(1)
XRN.ip

Sense strand
AGACAATTCATTCCCGTGAGTTACCAGACTGTTATGTCTTTCAGAATACGGCAAGTATCTTTGTTTTACTAGCTACTTCCTTTTATTTTTTTCCTACACTTTTTGTTGATGCAGAGTATAAAACACAGCAGCCTACAGATGTGTTAAATGCAGTCATGTTTAAAACAGATTTAGTGATACAATATGATACTCTTTTCTTTTTTTCTAATACATAGTCTCGCTCTGTCACCCAGGCTGGAGTGCAGTGGCG
................................................................................................((((.((((((...(((((((((..((((((............))))))..))))..)).)))....))))))...))))..........................................................................
.................................................................................82.............................................................................................................................209.......................................
SizePerfect hitTotal NormPerfect NormSRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189784SRR343334SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR343335SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR343336SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR189782TAX577746(Rovira)
total RNA. (breast)		SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR189787SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)		SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)
..........................................................................................................................................................................................ATACTCTTTTCTTTTTTTTTTG..........................................2229.000.007.006.006.009.00-----1.00-----------
..........................................................................................................................................................................................ATACTCTTTTCTTTTTTTG.............................................1926.000.009.006.008.002.001.00----------------
..........................................................................................................................................................................................ATACTCTTTTCTTTTTTTTTG...........................................2121.000.004.002.004.008.00---3.00-------------
..........................................................................................................................................................................................ATACTCTTTTCTTTTTTTTG............................................2015.000.005.007.001.001.00---1.00-------------
........................................................................CTACTTCCTTTTATTTTTTTCCTACACTTTTTG.................................................................................................................................................33110.0010.002.001.005.002.00-----------------
......................................................................................TTTTTTCCTACACTTTTTTG................................................................................................................................................204.000.00-----1.001.00-2.00------------
........................................................................CTACTTCCTTTTATTTTTTTCCTACACTTTCTG.................................................................................................................................................334.000.002.002.00-------------------
...................................................................................................TTTTTGTTGATGCAGAAT.....................................................................................................................................183.000.00----------3.00----------
..........................................................................................................................................................................................ATACTCTTTTCTTTTTTTTTTC..........................................222.000.00---------2.00-----------
....................................................................................ATTTTTTTCCTACACTTTC...................................................................................................................................................192.000.00----2.00----------------
..........................................................................................................................................................................................ATACTCTTTTCTTTTTTTTTGG..........................................222.000.00-1.001.00------------------
.......................................................................................TTTTTCCTACACTTTACAG................................................................................................................................................192.000.00------1.00-1.00------------
..........................................................................................................................................................................................ATACTCTTTTCTTTTTTTAAG...........................................212.000.002.00--------------------
......................................................................................TTTTTTCCTACACTTGAC..................................................................................................................................................182.000.00------------2.00--------
....................................................................................................................................................................................................CTTTTTTTCTAATACTCTA...................................192.000.002.00--------------------
......................................................................................TTTTTTCCTACACTTTTTTTG...............................................................................................................................................212.000.00------2.00--------------
........................................................................CTACTTCCTTTTATTTTTTTCCTACACTTCTTG.................................................................................................................................................332.000.001.001.00-------------------
......................................................................................TTTTTTCCTACACTTTTTTCTG..............................................................................................................................................222.000.00-----2.00---------------
......................................................................................TTTTTTCCTACACTTTTTTGA...............................................................................................................................................211.000.00------1.00--------------
..........................................................................................................................................................................................ATACTCTTTTCTTTTTCAAG............................................201.000.001.00--------------------
..........................................................................ACTTCCTTTTATTTTTTTTT............................................................................................................................................................201.000.00---1.00-----------------
........................................................................CTACTTCCTTTTATTTTTTTCCTACACTTCTCG.................................................................................................................................................331.000.00-1.00-------------------
............................................................................................................................................................................................ACTCTTTTCTTTTTTTCTTTG.........................................211.000.00-1.00-------------------
.............................................................................TCCTTTTATTTTTTTCAATT.........................................................................................................................................................201.000.00----1.00----------------
.....................................................................................TTTTTTTCCTACACTTTCTTT................................................................................................................................................211.000.00-----1.00---------------
..........................................................................................................................................................................................ATACTCTTTTCTTTTTTTTGG...........................................211.000.00--1.00------------------
............................................................................................................................................................................................ACTCTTTTCTTTTTTTCTTTTA........................................221.000.001.00--------------------
.................................................................................................................................................................................................................ACATAGTCTCGCTCTGTAGCT....................211.000.00-------------------1.00-
...........................................................................CTTCCTTTTATTTTTTTCATG..........................................................................................................................................................211.000.001.00--------------------
.............................................................................TCCTTTTATTTTTTTCCTTTTG.......................................................................................................................................................221.000.001.00--------------------
......................................................................................TTTTTTCCTACACTTTTTCTTG..............................................................................................................................................221.000.00--------1.00------------
..........................................................................................................................................................................................ATACTCTTTTCTTTTTGGTG............................................201.000.00-------1.00-------------
..........................................................................................................................................................................................ATACTCTTTTCTTTTCTCC.............................................191.000.001.00--------------------
..........................................................................ACTTCCTTTTATTTTTTTTTTT..........................................................................................................................................................221.000.00----1.00----------------
.....................................................................................TTTTTTTCCTACACTTTTTCTTG..............................................................................................................................................2341.000.75------0.75-0.25------------
...........................................................................................................................................................................................TACTCTTTTCTTTTTTTTTAG..........................................211.000.00----1.00----------------
.............................................................................................................................................................................................CTCTTTTCTTTTTTTCTCAT.........................................201.000.00-------1.00-------------
........................................................................................TTTTCCTACACTTTTTTCTG..............................................................................................................................................201.000.00-----1.00---------------
........................................................................CTACTTCCTTTTATTTTTTTCCTACACTTTG...................................................................................................................................................311.000.00--1.00------------------
......................................................................................TTTTTTCCTACACTTTTTGTG...............................................................................................................................................211.000.00-----1.00---------------
.................................................................................................................................................................................................TTTCTTTTTTTCTAATCTTG.....................................201.000.00---1.00-----------------
.............................................................................................................................................................................................CTCTTTTCTTTTTTTCTGCAG........................................211.000.00----1.00----------------
......................................................................................................................................ACAGATGTGTTAAATGCA..................................................................................................1811.001.00---------------1.00-----
......TTCATTCCCGTGAGTTACCAGACTGTT.........................................................................................................................................................................................................................2711.001.00--------------------1.00
..........................................................................................................................................................................................ATACTCTTTTCTTTTTTTCTTTTG........................................241.000.00---------1.00-----------
....................................................................................ATTTTTTTCCTACACTTCC...................................................................................................................................................191.000.00----1.00----------------
..........................................................................................................................................................................................ATACTCTTTTCTTTTTCTG.............................................191.000.00-1.00-------------------
.....................................................................................TTTTTTTCCTACACTTTTT..................................................................................................................................................1940.750.75------0.25-------0.50------
.....................................................................................TTTTTTTCCTACACTTTTTTTG...............................................................................................................................................2240.500.75-----0.25--0.25------------
.....................................................................................TTTTTTTCCTACACTTTTTG.................................................................................................................................................2030.330.33-----0.33---------------

Antisense strand
AGACAATTCATTCCCGTGAGTTACCAGACTGTTATGTCTTTCAGAATACGGCAAGTATCTTTGTTTTACTAGCTACTTCCTTTTATTTTTTTCCTACACTTTTTGTTGATGCAGAGTATAAAACACAGCAGCCTACAGATGTGTTAAATGCAGTCATGTTTAAAACAGATTTAGTGATACAATATGATACTCTTTTCTTTTTTTCTAATACATAGTCTCGCTCTGTCACCCAGGCTGGAGTGCAGTGGCG
................................................................................................((((.((((((...(((((((((..((((((............))))))..))))..)).)))....))))))...))))..........................................................................
.................................................................................82.............................................................................................................................209.......................................
SizePerfect hitTotal NormPerfect NormSRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189784SRR343334SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR343335SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR343336SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR189782TAX577746(Rovira)
total RNA. (breast)		SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR189787SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)		SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)
...................GTTACCAGACTGTTAGA...................................................................................................................................................................................................................... 173.000.00-----------2.00-1.00-------
...................GTTACCAGACTGTTAGAT..................................................................................................................................................................................................................... 182.000.00-------------1.00--1.00----
...................................................CAAGTATCTTTGTTTAAAG.................................................................................................................................................................................... 191.000.00--------------1.00------
.....................................................AGTATCTTTGTTTTACTAGGTG............................................................................................................................................................................... 221.000.00-----------------1.00---
...................................................................................................................................................................................................................ATAGTCTCGCTCTGTCACCCAGGTTTT............ 271.000.00------------------1.00--