ID: uc001dii.2_intron_0_0_chr1_78414460_r
GENE: (19)
chr1:78414410-78414889-


(1)
AGO1.ip 		(3)
B-CELL 		(1)
BRAIN 		(1)
BREAST 		(11)
CELL-LINE 		(2)
CERVIX 		(1)
HEART 		(1)
HELA 		(1)
LIVER 		(3)
OTHER 		(15)
SKIN 		(1)
XRN.ip

Sense strand
ATGCCCAGACAAGTCCCCAGGGAATGCCACAGCATCCTCCAGCACCTCAGGTATAATGTAATTGCTAATTTGTTGATTTCTACTCCAGTCTGTTTTCTGCATGTTTACTGTTTGTCTGTTTGGGAGTGTTTGCCTTTTAAATTTTTATCTGGCAAAGTATAATAACTATTTAAATGAAGTACTACGGTGTATTGTTTGGGTTTTTTTGTTTTTTATAATGCTTTCCAGCATCTGAGTGGTGAATATTTCTGCAATGCCTTTGATTTTAAAAATAAATTTTCTTCCCCCAGGGATTTGCAAATCATGCAAGAAGCCACCACCATTTATATTAACCACTTTTTCTTTCTTAAAGGATTCACTCCTGAATTAGCTCCATTTCAAGGATTTTCTTTAACTTTTTGTGTATTTCTTATGTATCTCTTCTGCACAGGGCCAATAATAAGAAGTGGACAATACAGTATTTGCTTCATTGTGTGGGGG
..........................................................................................................................................................................................................................................................................................................................................................((((((((.....(((((((..........)))).)))..)))))))).....((((((..................))))))...................................................
..............................................................................................................................................................................................................................................................................................................................319............................................................................................................430................................................
SizePerfect hitTotal NormPerfect NormSRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR343334SRR189784SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189782SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM1105748AGO1(GSM1105748)
small RNA sequencing data. (ago1 hela)		SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR191587(GSM715697)
50genomic small RNA (size selected RNA from t. (breast)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR189787SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		GSM532874(GSM532874)
G699T. (cervix)		SRR330909(SRX091747)
tissue: normal skindisease state: normal. (skin)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)		SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR444042(SRX128890)
Sample 3cDNABarcode: AF-PP-335: ACG CTC TTC C. (skin)		SRR040008(GSM532893)
G727N. (cervix)		SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)
...................................................................................................................................................................................................................................................................................................................................TTATATTAACCACTTTATCT.........................................................................................................................................2012.000.00--10.00----------------1.00--------1.00--------------
.......................................................................................................................................................................................ACGGTGTATTGTTTGGGTTTTTTTGTTTTCT..........................................................................................................................................................................................................................................................................3116.001.006.00------------------------------------------
.......................................................................................................................................................................................ACGGTGTATTGTTTGGGTTTTTTTGTTTC............................................................................................................................................................................................................................................................................294.000.00-4.00-----------------------------------------
..................................................................................................................................................................................................................................................................................................................................................................................................................................................AATAATAAGAAGTGGACAATACAG......................2413.003.00------3.00------------------------------------
......................................................................................................................................................................................................................................................................................................................................TATTAACCACTTTTTCTAG.......................................................................................................................................192.000.00-------2.00-----------------------------------
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................AATAAGAAGTGGACAATA.........................1812.002.00-----------------------1.00-----1.00-------------
............................................................................................................................................................................................................................................................................................................................................................................................AGGATTTTCTTTAACTTTTTGTGT............................................................................2412.002.00-----1.00------------------------------1.00------
.......................................................................................................................................................................................ACGGTGTATTGTTTGGGTTTTTTTGTTTCCT..........................................................................................................................................................................................................................................................................312.000.00-2.00-----------------------------------------
................................................................................................................................................................................................................................CCAGCATCTGAGTGGTGAATATTTCTGCAATG................................................................................................................................................................................................................................3212.002.00---2.00---------------------------------------
....................................................................................................................................................................................ACTACGGTGTATTGTTTGGGTTTTTTTGTC..............................................................................................................................................................................................................................................................................302.000.002.00------------------------------------------
.......................................................................................................................................................................................ACGGTGTATTGTTTGGGTTTTTTTGTTTTTC..........................................................................................................................................................................................................................................................................312.000.00-2.00-----------------------------------------
............................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTGGACAATACAGTATTTGCT..............2212.002.002.00------------------------------------------
.............................................................................................................GTTTGTCTGTTTGGGAGTGTTTGCC..........................................................................................................................................................................................................................................................................................................................................................2512.002.00-2.00-----------------------------------------
.............................................................TTGCTAATTTGTTGATTTCTACTC...........................................................................................................................................................................................................................................................................................................................................................................................................2412.002.002.00------------------------------------------
.........................................................................................................................................................................................................................................................................................................................................................................................TCAAGGATTTTCTTTAACTTTTTGTGT............................................................................2712.002.00-----1.00-----------------------------1.00-------
............................................................................................................................................................................................................................CTTTCCAGCATCTGAGTGGTG...............................................................................................................................................................................................................................................2112.002.00-----------2.00-------------------------------
....................................................................................................................................................................................................TGGGTTTTTTTGTTTTTCGCC.......................................................................................................................................................................................................................................................................211.000.00-1.00-----------------------------------------
...................................................................................................................................................................................................................................................................................................................................TTATATTAACCACTTTAGCT.........................................................................................................................................201.000.00--1.00----------------------------------------
.......................................................................................................................................................................................ACGGTGTATTGTTTGGGTTTTTTTGTTTT............................................................................................................................................................................................................................................................................2911.001.00----------------------------------1.00--------
................................CATCCTCCAGCACCTCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001.00-----------------1.00-------------------------
.............................................................................................................................................................................................................................................................................................................................................................................................GGATTTTCTTTAACTTTTTGTGT............................................................................2311.001.00-------------------------------------1.00-----
...........................................................................ATTTCTACTCCAGTCTCTG..................................................................................................................................................................................................................................................................................................................................................................................................191.000.00--------1.00----------------------------------
...................................................................................................................................................................................................................................................................................................................................TTATATTAACCACTTTATCA.........................................................................................................................................201.000.00--1.00----------------------------------------
....................................................................................................................................................................................................TGGGTTTTTTTGTTTTTTCTGG......................................................................................................................................................................................................................................................................221.000.00-1.00-----------------------------------------
...............................................................................................................................................................................................................................................................................ATAAATTTTCTTCCCTTAC..............................................................................................................................................................................................191.000.00-------------1.00-----------------------------
.......................................................................................................................................................................................ACGGTGTATTGTTTGGGTTTTTTTGTTTCTT..........................................................................................................................................................................................................................................................................311.000.00-1.00-----------------------------------------
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGACAATACAGTATTTGCCTC............221.000.001.00------------------------------------------
....................................................................................................................................................................................................TGGGTTTTTTTGTTTTTTCGG.......................................................................................................................................................................................................................................................................211.000.00-1.00-----------------------------------------
..............................................................................................................TTTGTCTGTTTGGGAGTGTTTGCCTTTTAAATT.................................................................................................................................................................................................................................................................................................................................................3311.001.00------------------1.00------------------------
.............................................................................................................................................................................................TATTGTTTGGGTTTTTTTGTTTTTC..........................................................................................................................................................................................................................................................................251.000.001.00------------------------------------------
................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAATAATAAGAAGTGGACAATACAGTAT...................2911.001.00----------1.00--------------------------------
..............................................................................................................................................................................................ATTGTTTGGGTTTTTTTGTTTTTC..........................................................................................................................................................................................................................................................................241.000.001.00------------------------------------------
.......................................................................................................................................................................................ACGGTGTATTGTTTGGGTTTTTTT.................................................................................................................................................................................................................................................................................2411.001.00--------------------------------1.00----------
.........................................................................................................................................................................................................................................................................................................................................................................................................................TTATGTATCTCTTCTGCACAGT.................................................221.000.00----------------1.00--------------------------
.......................................................................................................................................................................................ACGGTGTATTGTTTGGGTTTTTTTGTTTTC...........................................................................................................................................................................................................................................................................3011.001.00-1.00-----------------------------------------
.........................................................................................................................................................................................................................................................................................................CAAATCATGCAAGAAGCCACCACCAT.............................................................................................................................................................2611.001.00---1.00---------------------------------------
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGTGGACAATACAGTATTTGCTTCA...........2611.001.001.00------------------------------------------
................................................................................................................................................................................................TGTTTGGGTTTTTTTGTTTTTTCC........................................................................................................................................................................................................................................................................241.000.00-1.00-----------------------------------------
...................................................................................................................................................................................................................................................................................................................................TTATATTAACCACTTTATA..........................................................................................................................................191.000.00--1.00----------------------------------------
..........................................................................................................................................................................................................................................................................................................................................................................................CAAGGATTTTCTTTAACTTTTTGTGT............................................................................2611.001.00--------------------1.00----------------------
..............................................................................................................................................................................................................................................................................................................................................................................................................................TATCTCTTCTGCACAAAG................................................181.000.00--------1.00----------------------------------
...........................................................................................................................................................................................................................................................................................................................................................................................AAGGATTTTCTTTAACTTTTTGTGT............................................................................2511.001.00----1.00--------------------------------------
............................................................................................................................................................................................................................................................................................................................................................................................................................................AGGGCCAATAATAAGAAGTGGACAATA.........................2711.001.00---1.00---------------------------------------
.....................................................................................................................................................................................................................................ATCTGAGTGGTGAATATTTCTGCAA..................................................................................................................................................................................................................................2511.001.00--------------------------1.00----------------
...........................................................................................................................................................................................TGTATTGTTTGGGTTTTTTTGTTTCCT..........................................................................................................................................................................................................................................................................271.000.00-1.00-----------------------------------------
........................................................................................................TTACTGTTTGTCTGTTTGT.....................................................................................................................................................................................................................................................................................................................................................................191.000.00-1.00-----------------------------------------
..............................................................................................................................................................................................ATTGTTTGGGTTTTTTTGTTTTCTAT........................................................................................................................................................................................................................................................................261.000.001.00------------------------------------------
.......................................................................................................................................................................................ACGGTGTATTGTTTGGGTTTTTCTG................................................................................................................................................................................................................................................................................251.000.001.00------------------------------------------
.....................................................................................................................GTTTGGGAGTGTTTGCCTTTT......................................................................................................................................................................................................................................................................................................................................................2111.001.00---------------------------1.00---------------
.............................................................................................................................................................................................TATTGTTTGGGTTTTTTTGTTTTTTAC........................................................................................................................................................................................................................................................................271.000.001.00------------------------------------------
..................................................................................................................................................................................................................................AGCATCTGAGTGGTGAATATTTCTGCAACG................................................................................................................................................................................................................................301.000.00---1.00---------------------------------------
...........................................................................................................................................................................................................................................................................................................................................................................................................................................CAGGGCCAATAATAATCAC..................................191.000.00------------------------------1.00------------
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGTGGACAATACAGTATGTG................2111.001.00--------------1.00----------------------------
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAAGTGGACAATACAGTATTTGC...............2411.001.001.00------------------------------------------
.................................ATCCTCCAGCACCTCAGGTATAATG......................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001.00----------------------1.00--------------------
..........................CCACAGCATCCTCCAGCACCT.................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001.00-----1.00-------------------------------------
.....CAGACAAGTCCCCAGGGAATGCCACAGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.001.00---------------1.00---------------------------
.......................................................................................................................................................................................ACGGTGTATTGTTTGGGTTTTTTTGTTCTT...........................................................................................................................................................................................................................................................................301.000.001.00------------------------------------------
...........................CACAGCATCCTCCAGTGCT..................................................................................................................................................................................................................................................................................................................................................................................................................................................191.000.00------------------------1.00------------------
.......................................................................................................................................................................................ACGGTGTATTGTTTGGGTTT.....................................................................................................................................................................................................................................................................................2011.001.00------------1.00------------------------------
..........................................................................................................................................................................................................................................................................................................................................AACCACTTTTTCTTTCTTTTG.................................................................................................................................211.000.00---1.00---------------------------------------
......................................................................................................................TTTGGGAGTGTTTGCCTTTTAAAT..................................................................................................................................................................................................................................................................................................................................................2411.001.00---1.00---------------------------------------
............................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTGGACAATACAGTATTTGCTTCA...........2511.001.001.00------------------------------------------
...................................................................................................................................................................................................TTGGGTTTTTTTGTTTTTCCCC.......................................................................................................................................................................................................................................................................221.000.001.00------------------------------------------
...................................................................................................................................................................................................................................................................................................................................TTATATTAACCACTTTAGCG.........................................................................................................................................201.000.00--1.00----------------------------------------
........................TGCCACAGCATCCTCCAGCACCTCAGGGCC..........................................................................................................................................................................................................................................................................................................................................................................................................................................301.000.00-1.00-----------------------------------------
.........................................................................................................................................................................................GGTGTATTGTTTGGGTTTTTTTGTCCTT...........................................................................................................................................................................................................................................................................281.000.001.00------------------------------------------
.............................................................................................................................................................................................................................................................................................................................................CACTTTTTCTTTCTTAATAG...............................................................................................................................201.000.00-------------1.00-----------------------------
......................................................................................................GTTTACTGTTTGTCTGTTTG......................................................................................................................................................................................................................................................................................................................................................................2011.001.00-------------------------------1.00-----------
.............................................................................................................................................TTTTTATCTGGCAAAGTATA...............................................................................................................................................................................................................................................................................................................................2011.001.00----------1.00--------------------------------
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGTGGACAATACAGTAT...................1811.001.00---------------------------------1.00---------
...........................................................................................................................................................................................................................................................................................................................................ACCACTTTTTCTTTCTTTTTG................................................................................................................................211.000.00---------------------1.00---------------------
.....CAGACAAGTCCCCAGGGA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................1820.500.50----------------------------------------0.50--
...........................................................................ATTTCTACTCCAGTCTG....................................................................................................................................................................................................................................................................................................................................................................................................1720.500.50--------------0.50----------------------------
............GTCCCCAGGGAATGCCA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................1720.500.50---------------------------------------0.50---
..................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTCTGCACAGGGCC..............................................1630.330.33---------------0.33---------------------------
...................................................................................................................................................................................................................................................................................................................................................................................................TCTTTAACTTTTTGTGT............................................................................1740.250.25-----------------------------------------0.25-
....................................................................................................................................................................................................................................................................................................................................................................................................CTTTAACTTTTTGTGT............................................................................1680.120.12----0.12--------------------------------------

Antisense strand
ATGCCCAGACAAGTCCCCAGGGAATGCCACAGCATCCTCCAGCACCTCAGGTATAATGTAATTGCTAATTTGTTGATTTCTACTCCAGTCTGTTTTCTGCATGTTTACTGTTTGTCTGTTTGGGAGTGTTTGCCTTTTAAATTTTTATCTGGCAAAGTATAATAACTATTTAAATGAAGTACTACGGTGTATTGTTTGGGTTTTTTTGTTTTTTATAATGCTTTCCAGCATCTGAGTGGTGAATATTTCTGCAATGCCTTTGATTTTAAAAATAAATTTTCTTCCCCCAGGGATTTGCAAATCATGCAAGAAGCCACCACCATTTATATTAACCACTTTTTCTTTCTTAAAGGATTCACTCCTGAATTAGCTCCATTTCAAGGATTTTCTTTAACTTTTTGTGTATTTCTTATGTATCTCTTCTGCACAGGGCCAATAATAAGAAGTGGACAATACAGTATTTGCTTCATTGTGTGGGGG
..........................................................................................................................................................................................................................................................................................................................................................((((((((.....(((((((..........)))).)))..)))))))).....((((((..................))))))...................................................
..............................................................................................................................................................................................................................................................................................................................319............................................................................................................430................................................
SizePerfect hitTotal NormPerfect NormSRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR343334SRR189784SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189782SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM1105748AGO1(GSM1105748)
small RNA sequencing data. (ago1 hela)		SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR191587(GSM715697)
50genomic small RNA (size selected RNA from t. (breast)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR189787SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		GSM532874(GSM532874)
G699T. (cervix)		SRR330909(SRX091747)
tissue: normal skindisease state: normal. (skin)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)		SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR444042(SRX128890)
Sample 3cDNABarcode: AF-PP-335: ACG CTC TTC C. (skin)		SRR040008(GSM532893)
G727N. (cervix)		SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)
................................CTGAGGTGCTGGAGGATG.............................................................................................................................................................................................................................................................................................................................................................................................................................................. 1812.002.00----2.00--------------------------------------
..............................AGCATCCTCCAGCACTAA................................................................................................................................................................................................................................................................................................................................................................................................................................................ 181.000.00-------------------------1.00-----------------
.........................................................................................................................................................................................................................................................................................TTCCCCCAGGGATTTCGT..................................................................................................................................................................................... 181.000.00---------1.00---------------------------------
..................................TCCTCCAGCACCTCACA............................................................................................................................................................................................................................................................................................................................................................................................................................................. 171.000.00--------------------------------------1.00----
..................................TCCTCCAGCACCTCAGGCA........................................................................................................................................................................................................................................................................................................................................................................................................................................... 191.000.00---------1.00---------------------------------
..................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTCTGCACAGGGCATA............................................ 181.000.00------------1.00------------------------------
..............................................................................................................................................................................................................................................GTGAATATTTCTGCAAAGCA.............................................................................................................................................................................................................................. 201.000.001.00------------------------------------------
............................................ATTACATTATACCTGAGG.................................................................................................................................................................................................................................................................................................................................................................................................................................. 1811.001.00----1.00--------------------------------------
...........................................................................AGACTGGAGTAGAAAT..................................................................................................................................................................................................................................................................................................................................................................................................... 1690.110.11------------------------------------------0.11