ID: uc001dih.3_intron_5_0_chr1_78425949_r
GENE: (15)
chr1:78425899-78426078-


(4)
B-CELL 		(9)
BRAIN 		(16)
BREAST 		(35)
CELL-LINE 		(2)
CERVIX 		(1)
FIBROBLAST 		(2)
HEART 		(9)
HELA 		(6)
LIVER 		(1)
OTHER 		(1)
RRP40.ip 		(15)
SKIN 		(2)
UTERUS 		(2)
XRN.ip

Sense strand
CCATACAACCCTGCACCTTATAATCCTGGACCACCAGGCCCGGCTCCTCAGTAAGTATTGGGTTTAGTTCTGGGCTTTCCCCAAAGATTCTAGTTTTGGGACTGTTTTTTATGCTGATTTTTCTTTTCAGTGGTCCTCCAGCCCCATATGCTCCCCAGGGATGGGGAAATGCATATCCAC
.....................................................(((((..((..((((((..((((.((......))....)).))..))))))..))..))))).................................................................
..................................................51.............................................................................130................................................
SizePerfect hitTotal NormPerfect NormDRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)		DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		SRR207119(GSM721081)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR037943(GSM510481)
293DcrTN. (cell line)		SRR037937(GSM510475)
293cand2. (cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR029124(GSM416753)
HeLa. (hela)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)		SRR037938(GSM510476)
293Red. (cell line)		GSM450604(GSM450604)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)		DRR001483(DRX001037)
"Hela long cytoplasmic cell fraction, control. (hela)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		DRR001482(DRX001036)
"Hela long total cell fraction, control". (hela)		SRR189782GSM450603(GSM450603)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR363674(GSM830251)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR037936(GSM510474)
293cand1. (cell line)		SRR037935(GSM510473)
293cand3. (cell line)		GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)		GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)		DRR001487(DRX001041)
"Hela long nuclear cell fraction, LNA(+)". (hela)		SRR029125(GSM416754)
U2OS. (cell line)		GSM416733(GSM416733)
HEK293. (cell line)		SRR037931(GSM510469)
293GFP. (cell line)		SRR033726(GSM497071)
Mututated CLL (CLLM633). (B cell)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR037941(GSM510479)
293DroshaTN. (cell line)		SRR037940(GSM510478)
293cand5_rep2. (cell line)		SRR343335SRR343334SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		SRR029129(GSM416758)
SW480. (cell line)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR029126(GSM416755)
143B. (cell line)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR029131(GSM416760)
MCF7. (cell line)		SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)		SRR037933(GSM510471)
293cand4_rep2. (cell line)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR191602(GSM715712)
60genomic small RNA (size selected RNA from t. (breast)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191409(GSM715519)
19genomic small RNA (size selected RNA from t. (breast)		SRR189784GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR191603(GSM715713)
71genomic small RNA (size selected RNA from t. (breast)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR191590(GSM715700)
48genomic small RNA (size selected RNA from t. (breast)		SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)		SRR191586(GSM715696)
197genomic small RNA (size selected RNA from . (breast)		SRR191566(GSM715676)
94genomic small RNA (size selected RNA from t. (breast)		SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		GSM359176(GSM359176)
hela_chip_smrna_pure. (hela)		SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)		SRR191631(GSM715741)
75genomic small RNA (size selected RNA from t. (breast)		SRR191629(GSM715739)
5genomic small RNA (size selected RNA from to. (breast)		SRR191626(GSM715736)
36genomic small RNA (size selected RNA from t. (breast)		SRR040031(GSM532916)
G013T. (cervix)		SRR040008(GSM532893)
G727N. (cervix)		SRR038858(GSM458541)
MEL202. (cell line)		SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577739(Rovira)
total RNA. (breast)		SRR039636(GSM518473)
THP1_cyto_sRNAs. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR037932(GSM510470)
293cand4_rep1. (cell line)		SRR191416(GSM715526)
34genomic small RNA (size selected RNA from t. (breast)		SRR191597(GSM715707)
75genomic small RNA (size selected RNA from t. (breast)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR015448(SRR015448)
cytoplasmic small RNAs. (breast)		DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR191505(GSM715615)
139genomic small RNA (size selected RNA from . (breast)		GSM450600(GSM450600)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR191560(GSM715670)
77genomic small RNA (size selected RNA from t. (breast)		SRR330858(SRX091696)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR191625(GSM715735)
32genomic small RNA (size selected RNA from t. (breast)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		GSM359203(GSM359203)
hepg2_untreated_b. (cell line)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR039611(GSM531974)
Human Normal Liver Tissue Sample 1. (liver)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)
..................................................GTAAGTATTGGGTTTAGTTCTGGGCTTTCCCCAAAGATTCTAGTTTTGGGACTGTTTTTTATGCTGATTTTTCTTTTCAG..................................................801223.00223.00103.00109.00------------3.00-4.00-------4.00---------------------------------------------------------------------------------
............................................................................................................TTATGCTGATTTTTCTTTTCAGA.................................................23163.002.00----17.0013.001.003.00-------4.00---5.00-3.00----1.001.00--1.00---1.00--1.00-2.00----1.00----1.00------1.00---1.001.00-----1.00----1.00---------1.00--------1.00----1.00---------
.............................................................................................................TATGCTGATTTTTCTTTTCAGA.................................................22154.003.00---3.008.00--6.00--9.007.00---1.00----1.00-3.00--4.001.001.00--2.00-------------1.00---1.00---------1.00------------1.00---------1.00----1.00--1.00---1.00------------
................................................................................................TGGGACTGTTTTTTATGCTGATTTTTCTTTTCAGA.................................................3520.000.00--20.00-------------------------------------------------------------------------------------------------------
..................................................GTAAGTATTGGGTTTAGTTCTGGGCTTTCCCCAAAGATTCTAGTTTTGGGACTGTTTTTTATGCTGATTTTTCTTTTCAGAAA...............................................83118.00223.0016.002.00--------------------------------------------------------------------------------------------------------
................................................................................................TGGGACTGTTTTTTATGCTGATTTTTCTTTTCAGAA................................................3617.000.00--17.00-------------------------------------------------------------------------------------------------------
..................................................GTAAGTATTGGGTTTAGTTCTGGGCTTTCCCCAAAGATTCTAGTTTTGGGACTGTTTTTTATGCTGATTTTTCTTTTCAGA.................................................81115.00223.008.007.00--------------------------------------------------------------------------------------------------------
..................................................GTAAGTATTGGGTTTAGTTCTGGGCTTTCCCCAAAGATTCTAGTTTTGGGACTGTTTTTTATGCTGATTTTT..........................................................72115.0015.007.008.00--------------------------------------------------------------------------------------------------------
..................................................GTAAGTATTGGGTTTAGTTCTGGGCTTTCCCCAAAGATTCTAGTTTTGGGACTGTTTTTTATGCTGATTTTTCTTTTCAGAA................................................82114.00223.0013.00-------------1.00-------------------------------------------------------------------------------------------
..................................................GTAAGTATTGGGTTTAGTTCTG............................................................................................................22112.0012.00---3.00--9.00---------------------------------------------------------------------------------------------------
..................................................GTAAGTATTGGGTTTAGTTCTGGGCTTTCCCCAAAGATTCTAGTTTTGGGACTGTTTTTTATGCTGATTTTTCTTTTC....................................................78112.0012.006.005.00------------1.00-------------------------------------------------------------------------------------------
.................................................................................................GGGACTGTTTTTTATGCTGATTTTTCTTTTCAGA.................................................3410.000.00--10.00-------------------------------------------------------------------------------------------------------
..................................................GTAAGTATTGGGTTTAGTTCTGGGCTTTCCCCAAAGATTCTAGTTTTGGGACTGTTTTTTATGCTGATTTTTCTTTTCA...................................................79110.0010.00-10.00--------------------------------------------------------------------------------------------------------
..................................................GTAAGTATTGGGTTTAGTTCTGGGCT........................................................................................................2619.009.00---8.00----------------------------------------------------------------1.00-------------------------------------
.............................................................................................................TATGCTGATTTTTCTTTTCAGAA................................................2317.003.00-------1.00------------1.001.00---------3.00-------------------------------------------1.00------------------------------
..................................................GTAAGTATTGGGTTTAGTTCTGGGCTTTCCCCAAAGATTCTAGTTTTGGGACTGTTTTTTATGCTGATTTTTCT........................................................7417.007.00-7.00--------------------------------------------------------------------------------------------------------
.................................................AGTAAGTATTGGGTTTAGTTCTGGGCTTTCCCCAAAGATTCTAGTTTTGGGACTGTTTTTTATGCTGATTTTTCTTTTCAG..................................................8116.006.006.00---------------------------------------------------------------------------------------------------------
..................................................GTAAGTATTGGGTTTAGTTCTGGGCTTTCCCCAAAGATTCTAGTTTTGGGACTGTTTTTTATGCTGATTTTTCTTTT.....................................................7716.006.006.00---------------------------------------------------------------------------------------------------------
..............................................................................................................ATGCTGATTTTTCTTTTCAGA.................................................215.000.00---2.00--2.00--------------------------------------------------------1.00------------------------------------------
..................................................GTAAGTATTGGGTTTAGTTCTGGGCTTTCCCCAAAGATTCTAGTTTTGGGACTGTTTTTTATGCTGATTTTTCTTTTCAGAC................................................8215.00223.00-5.00--------------------------------------------------------------------------------------------------------
.........................................................................................................TTTTTATGCTGATTTTTCTTTTCAGA.................................................265.000.00-----5.00----------------------------------------------------------------------------------------------------
..................................................GTAAGTATTGGGTTTAG.................................................................................................................1724.504.50--------4.50-------------------------------------------------------------------------------------------------
...............................................................................................TTGGGACTGTTTTTTATGCTGATTTTTCTTTTCAGA.................................................364.000.00--4.00-------------------------------------------------------------------------------------------------------
..................................................GTAAGTATTGGGTTTAGTTCTGGGCTTTCCCCAAAGATTCTAGTTTTGGGACTGTTTTTTATGCTGATTTTTCTTT......................................................7614.004.00-4.00--------------------------------------------------------------------------------------------------------
.............................................................................................................TATGCTGATTTTTCTTTTCAG..................................................2113.003.00------2.00-------------------------------------------------------------------------------------1.00-------------
...............................................................................................................TGCTGATTTTTCTTTTCAGA.................................................203.000.00---2.00--1.00---------------------------------------------------------------------------------------------------
.................................................................................................GGGACTGTTTTTTATGCTGATTTTTCTTTTCAGAA................................................353.000.00--2.00---------------------------------------------------1.00---------------------------------------------------
..................................................GTAAGTATTGGGTTTAGTTCTGGGCTTTCCCCAAAGATTCTAGTTTTGGGACTGTTTTTTATGCTGATTTTTCTTTTCAGT.................................................8113.003.00-3.00--------------------------------------------------------------------------------------------------------
.......ACCCTGCACCTTATAATCCT.........................................................................................................................................................2013.003.00--------------------------------1.002.00------------------------------------------------------------------------
............................................................................................................TTATGCTGATTTTTCTTTTCATA.................................................233.000.00--------------------1.00-------------------------1.00---------------------------------1.00-------------------------
.............................................................................................................TATGCTGATTTTTCTTTTCAGAAA...............................................2412.003.00--------------------------1.001.00------------------------------------------------------------------------------
..................................................GTAAGTATTGGGTTTAGTTCTGGGC.........................................................................................................2512.002.00---2.00------------------------------------------------------------------------------------------------------
...................................................TAAGTATTGGGTTTAGTTCTGGGCTTTCCCCAAAGATTCTAGTTTTGGGACTGTTTTTTATGCTGATTTTTCTTTTCAGA.................................................802.000.00-2.00--------------------------------------------------------------------------------------------------------
................CTTATAATCCTGGACCACCAGGCCCG..........................................................................................................................................2612.002.00-----------------1.00---------------------------------1.00------------------------------------------------------
.......................TCCTGGACCACCAGGCCCGGCTCCTCA..................................................................................................................................2712.002.00---------------------------------------------------------------------1.00-------------------------------1.00----
............................................................................................................TTATGCTGATTTTTCTTTTCAG..................................................2212.002.00----------------------1.00--------------------------------1.00--------------------------------------------------
..................................................GTAAGTATTGGGTTTAGTTCTGGGCTTTCCCCAAAGATTCTAGTTTTGGGACTGTTTTTTATTT..................................................................642.000.00-2.00--------------------------------------------------------------------------------------------------------
..............................................................................................................ATGCTGATTTTTCTTTTCAGAA................................................222.000.00-----2.00----------------------------------------------------------------------------------------------------
..................................................GTAAGTATTGGGTTTAGTT...............................................................................................................1912.002.00------------------------------------------2.00---------------------------------------------------------------
...................................................................................................GACTGTTTTTTATGCTGATTTTTCTTTTCAG..................................................3112.002.00-----------------------------------2.00----------------------------------------------------------------------
.............................................................................................................TATGCTGATTTTTCTTTTCATA.................................................2212.001.00-------------------------------------1.00--------1.00-----------------------------------------------------------
............................................................................................................................................................AGGGATGGGGAAATGCATA.....1912.002.00----------------------------------------------------------------1.00-1.00---------------------------------------
............................................................................................................................................................AGGGATGGGGAAATGCATAT....2012.002.00---------------------------------------------2.00------------------------------------------------------------
............................................................................................................................................................AGGGATGGGGAAATGCAT......1821.501.50-----------------------------------------------1.50----------------------------------------------------------
....................................................AAGTATTGGGTTTAGTTCTGG...........................................................................................................2111.001.00--------------------------------------------------------------1.00-------------------------------------------
..................................................GTAAGTATTGGGTTTAGTTCTGG...........................................................................................................2311.001.00---1.00------------------------------------------------------------------------------------------------------
..................................................GTAAGTATTGGGTTTAGTTCTGGGCTTTCCCCAAAGATTCTAGTTTTGGGACTGTTTTTTATGCTGATTTTTCTTTTCGG..................................................8011.0012.001.00---------------------------------------------------------------------------------------------------------
..........CTGCACCTTATAATCCTG........................................................................................................................................................1811.001.00--------------------------------1.00-------------------------------------------------------------------------
..................................................GTAAGTATTGGGTTTAGTTCTGGGCTTTCCCC..................................................................................................3211.001.00----------------------------------------------------------------------------1.00-----------------------------
............................................................................................................TTATGCTGATTTTTCTTTTCAGAAA...............................................2511.002.00--------------------------------------------------1.00-------------------------------------------------------
.................................................................................................GGGACTGTTTTTTATGCTGATTTTTCTTTTCAGTA................................................351.000.00--1.00-------------------------------------------------------------------------------------------------------
.......ACCCTGCACCTTATAATCCTG........................................................................................................................................................2111.001.00-----------------1.00----------------------------------------------------------------------------------------
...........................................................................................................................................................CAGGGATGGGGAAATGCATAT....2111.001.00----------------------------------------------------------------------------------------------------1.00-----
...........................................................................................................................................................CAGGGATGGGGAAATGCAT......1911.001.00-----------1.00----------------------------------------------------------------------------------------------
.............................................................................................................TATGCTGATTTTTCTTTTCA...................................................2011.001.00-------------------------------------------------------------------------1.00--------------------------------
....................................................................................................ACTGTTTTTTATGCTGATTTTTCTTTTCAGA.................................................3111.001.00----------------------------------------1.00-----------------------------------------------------------------
....................................................................................................................ATTTTTCTTTTCAGTGGTCCTCCAGCCCC...................................2911.001.00-----------------------------1.00----------------------------------------------------------------------------
............................................................................................................TTATGCTGATTTTTCTTTTCAC..................................................221.000.00----------------------------------------------------------------------1.00-----------------------------------
............................................................................................GTTTTGGGACTGTTTTTTAT....................................................................2011.001.00-------1.00--------------------------------------------------------------------------------------------------
.............................................................................................................TATGCTGATTTTTCTTTTC....................................................1921.001.00---1.00------------------------------------------------------------------------------------------------------
....ACAACCCTGCACCTTATAATCC..........................................................................................................................................................2211.001.00--------------------------------1.00-------------------------------------------------------------------------
............................................................................................................TTATGCTGATTTTTCTTTTCAT..................................................221.000.00-------1.00--------------------------------------------------------------------------------------------------
..................................................GTAAGTATTGGGTTTAGTTCTGTA..........................................................................................................2411.0012.00---1.00------------------------------------------------------------------------------------------------------
..................................................................................................................................TGGTCCTCCAGCCCCATATGCTCCCCAGG.....................2911.001.00-----------------------------1.00----------------------------------------------------------------------------
..................................................GTAAGTATTGGGTTTAGTTCTGGGCTTTCCC...................................................................................................3111.001.00----------------------------------1.00-----------------------------------------------------------------------
...........................................................................................................................................AGCCCCATATGCTCCAA........................171.000.00-------------------------------------------1.00--------------------------------------------------------------
......................................................................................ATTCTAGTTTTGGGACTGTTTTTTATGCTGATTTTT..........................................................3611.001.00---------------------------------------------------------------------------------------------------1.00------
..................................................GTAAGTATTGGGTTTAGTTCTGGGCTTTCCCCAAAGATTCTAGTTTTGGGACTGTTTTTTATG...................................................................6311.001.00----------------1.00-----------------------------------------------------------------------------------------
..................................................GTAAGTATTGGGTTTCG.................................................................................................................171.000.00--------1.00-------------------------------------------------------------------------------------------------
........................CCTGGACCACCAGGCCCGGC........................................................................................................................................2011.001.00--------------------------------------1.00-------------------------------------------------------------------
.......................TCCTGGACCACCAGGCCCGA.........................................................................................................................................201.000.00--------------------------------------1.00-------------------------------------------------------------------
.......................................................................................................GTTTTTTATGCTGATTTTTCTTTTCAG..................................................2711.001.00----------------------------------------1.00-----------------------------------------------------------------
................................................................................................TGGGACTGTTTTTTATGCTGATTTTTCTTTTCAGAT................................................361.000.00--1.00-------------------------------------------------------------------------------------------------------
..................................................GTAAGTATTGGGTTTAGTTCTGGGCTTTCCCCAAAGATTCTAGTTTTGGGACTGTTTTTTATGC..................................................................6411.001.00--------------1.00-------------------------------------------------------------------------------------------
......AACCCTGCACCTTATAATCCT.........................................................................................................................................................2111.001.00-----------------1.00----------------------------------------------------------------------------------------
..ATACAACCCTGCACCTTATAATCCTG........................................................................................................................................................2611.001.00-----------------1.00----------------------------------------------------------------------------------------
......................ATCCTGGACCACCAGGCCCGGCTCCCC...................................................................................................................................271.000.00-------------------------------------------------------------------------------1.00--------------------------
...TACAACCCTGCACCTTATAATCCTGGACCA...................................................................................................................................................3011.001.00-----------------1.00----------------------------------------------------------------------------------------
.................................................................................................GGGACTGTTTTTTATGCTGATTTTTCTTTTCAGAAA...............................................361.000.00--1.00-------------------------------------------------------------------------------------------------------
............................................................................................................................................................AGGGATGGGGAAATGCATATC...2111.001.00-----------------------------------------------------------------------------------1.00----------------------
..................................................GTAAGTATTGGGTTTAGTTCTGGGCTTTC.....................................................................................................2911.001.00-----------------------------------------------------------------------------------------------1.00----------
....................................................................................................ACTGTTTTTTATGCTGATTTTTCTTTTCAG..................................................3011.001.00-------1.00--------------------------------------------------------------------------------------------------
..............................................................................................................ATGCTGATTTTTCTTTTCATA.................................................211.000.00-------1.00--------------------------------------------------------------------------------------------------
............................................................................................................TTATGCTGATTTTTCTTTTCAGAA................................................2411.002.00---------------1.00------------------------------------------------------------------------------------------
.....................AATCCTGGACCACCAGGCCCGGCTCCCC...................................................................................................................................281.000.00-----------------------------1.00----------------------------------------------------------------------------
............................................................................................................................................................AGGGATGGGGAAATGCA.......1740.500.50------------------------------------------------0.25------------------------------------------------------0.25--
....................................................................................................ACTGTTTTTTATGCTGATT.............................................................1920.500.50-------0.50--------------------------------------------------------------------------------------------------
........................................................................................TCTAGTTTTGGGACT.............................................................................1540.250.25--------------------------------------------------------------------------------------------------------0.25-
.............................................................................................................TATGCTGATTTTTCTTT......................................................1750.200.20---------------------------------------------------------------------------------------------------------0.20

Antisense strand
CCATACAACCCTGCACCTTATAATCCTGGACCACCAGGCCCGGCTCCTCAGTAAGTATTGGGTTTAGTTCTGGGCTTTCCCCAAAGATTCTAGTTTTGGGACTGTTTTTTATGCTGATTTTTCTTTTCAGTGGTCCTCCAGCCCCATATGCTCCCCAGGGATGGGGAAATGCATATCCAC
.....................................................(((((..((..((((((..((((.((......))....)).))..))))))..))..))))).................................................................
..................................................51.............................................................................130................................................
SizePerfect hitTotal NormPerfect NormDRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)		DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		SRR207119(GSM721081)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR037943(GSM510481)
293DcrTN. (cell line)		SRR037937(GSM510475)
293cand2. (cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR029124(GSM416753)
HeLa. (hela)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)		SRR037938(GSM510476)
293Red. (cell line)		GSM450604(GSM450604)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)		DRR001483(DRX001037)
"Hela long cytoplasmic cell fraction, control. (hela)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		DRR001482(DRX001036)
"Hela long total cell fraction, control". (hela)		SRR189782GSM450603(GSM450603)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR363674(GSM830251)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR037936(GSM510474)
293cand1. (cell line)		SRR037935(GSM510473)
293cand3. (cell line)		GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)		GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)		DRR001487(DRX001041)
"Hela long nuclear cell fraction, LNA(+)". (hela)		SRR029125(GSM416754)
U2OS. (cell line)		GSM416733(GSM416733)
HEK293. (cell line)		SRR037931(GSM510469)
293GFP. (cell line)		SRR033726(GSM497071)
Mututated CLL (CLLM633). (B cell)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR037941(GSM510479)
293DroshaTN. (cell line)		SRR037940(GSM510478)
293cand5_rep2. (cell line)		SRR343335SRR343334SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		SRR029129(GSM416758)
SW480. (cell line)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR029126(GSM416755)
143B. (cell line)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR029131(GSM416760)
MCF7. (cell line)		SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)		SRR037933(GSM510471)
293cand4_rep2. (cell line)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR191602(GSM715712)
60genomic small RNA (size selected RNA from t. (breast)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191409(GSM715519)
19genomic small RNA (size selected RNA from t. (breast)		SRR189784GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR191603(GSM715713)
71genomic small RNA (size selected RNA from t. (breast)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR191590(GSM715700)
48genomic small RNA (size selected RNA from t. (breast)		SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)		SRR191586(GSM715696)
197genomic small RNA (size selected RNA from . (breast)		SRR191566(GSM715676)
94genomic small RNA (size selected RNA from t. (breast)		SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		GSM359176(GSM359176)
hela_chip_smrna_pure. (hela)		SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)		SRR191631(GSM715741)
75genomic small RNA (size selected RNA from t. (breast)		SRR191629(GSM715739)
5genomic small RNA (size selected RNA from to. (breast)		SRR191626(GSM715736)
36genomic small RNA (size selected RNA from t. (breast)		SRR040031(GSM532916)
G013T. (cervix)		SRR040008(GSM532893)
G727N. (cervix)		SRR038858(GSM458541)
MEL202. (cell line)		SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577739(Rovira)
total RNA. (breast)		SRR039636(GSM518473)
THP1_cyto_sRNAs. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR037932(GSM510470)
293cand4_rep1. (cell line)		SRR191416(GSM715526)
34genomic small RNA (size selected RNA from t. (breast)		SRR191597(GSM715707)
75genomic small RNA (size selected RNA from t. (breast)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR015448(SRR015448)
cytoplasmic small RNAs. (breast)		DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR191505(GSM715615)
139genomic small RNA (size selected RNA from . (breast)		GSM450600(GSM450600)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR191560(GSM715670)
77genomic small RNA (size selected RNA from t. (breast)		SRR330858(SRX091696)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR191625(GSM715735)
32genomic small RNA (size selected RNA from t. (breast)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		GSM359203(GSM359203)
hepg2_untreated_b. (cell line)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR039611(GSM531974)
Human Normal Liver Tissue Sample 1. (liver)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)
............................................TCCTCAGTAAGTATTGCACC.................................................................................................................... 2010.000.00---------1.00---3.00----2.00----2.00----1.00----------------------------1.00------------------------------------------------
............................................TCCTCAGTAAGTATTGCCA..................................................................................................................... 198.000.00--------2.001.00--------1.00----1.00----1.00-------2.00---------------------------------------------------------------------
............................................TCCTCAGTAAGTATTCACC..................................................................................................................... 198.000.00---5.00-----2.00---1.00--------------------------------------------------------------------------------------------
............................................TCCTCAGTAAGTATTGCA...................................................................................................................... 185.000.00------------2.00-----1.00----1.00------------------------------------------------------------------1.00---------------
............................................TCCTCAGTAAGTATTCCCA..................................................................................................................... 195.000.00---3.00-----1.00------------------------------------------------------------------------------1.00-----------------
............................................TCCTCAGTAAGTATTAC....................................................................................................................... 175.000.00--------5.00-------------------------------------------------------------------------------------------------
............................................TCCTCAGTAAGTATTCCA...................................................................................................................... 185.000.00---------2.00--2.00----------------------------------------------1.00----------------------------------------------
............................................TCCTCAGTAAGTATTGCCCA.................................................................................................................... 203.000.00---------1.00--------1.00------------------------1.00--------------------------------------------------------------
............................................TCCTCAGTAAGTATTGC....................................................................................................................... 173.000.00---------1.00---1.00-----------------------------------------------------------------------------------1.00--------
....................................................................................................................................GTCCTCCAGCCCCATTCTG............................. 193.000.00-----------------------------------------------------------------1.00------------------1.00---------1.00-----------
............................................TCCTCAGTAAGTATTCAC...................................................................................................................... 183.000.00-----------------------------------------1.00------------------------------------1.00------1.00--------------------
............................................TCCTCAGTAAGTATTCACA..................................................................................................................... 192.000.00------------1.00----------------------------1.00----------------------------------------------------------------
............................................TCCTCAGTAAGTATTCCCC..................................................................................................................... 192.000.00---2.00------------------------------------------------------------------------------------------------------
............................................TCCTCAGTAAGTATTGCTA..................................................................................................................... 191.000.00------------1.00---------------------------------------------------------------------------------------------
............................................TCCTCAGTAAGTATTAAAA..................................................................................................................... 191.000.00--------------------------------------------------------------------------1.00-------------------------------
..ATACAACCCTGCACCTTATTGT............................................................................................................................................................ 221.000.00-----------------------------------------------------------------------------1.00----------------------------
......................................................................................................................................................CTCCCCAGGGATGGGGAAACG......... 211.000.00---------------------------------------------------------------------------------------1.00------------------
.................................................................AGTTCTGGGCTTTCCCTG................................................................................................. 181.000.00-----------------------------------------------------1.00----------------------------------------------------
....................................................................................................................................GTCCTCCAGCCCCATATTCTG........................... 211.000.00--------------------------------------------------------------------------------------------------1.00-------
............................................TCCTCAGTAAGTATTGCCC..................................................................................................................... 191.000.00----------------------------1.00-----------------------------------------------------------------------------
............................................TCCTCAGTAAGTATTCCC...................................................................................................................... 181.000.00---------1.00------------------------------------------------------------------------------------------------
............................................TCCTCAGTAAGTATTGAAAA.................................................................................................................... 201.000.00--------------------1.00-------------------------------------------------------------------------------------
............................................TCCTCAGTAAGTATTCATC..................................................................................................................... 191.000.00---------1.00------------------------------------------------------------------------------------------------
............................................TCCTCAGTAAGTATTGCAC..................................................................................................................... 191.000.00-------------1.00--------------------------------------------------------------------------------------------
............................................TCCTCAGTAAGTATTACA...................................................................................................................... 181.000.00----------------------------------------------------1.00-----------------------------------------------------
.....................................................CCCAGAACTAAACCCAATACT.......................................................................................................... 2120.500.50------------------------------------------------------------------------------------------------------0.50---
.............................................CAATACTTACTGAGG........................................................................................................................ 1580.120.12-------------------------------------------------0.12--------------------------------------------------------