ID: uc001dih.3_intron_14_0_chr1_78432436_r
GENE: (6)
chr1:78432386-78432617-


(3)
B-CELL 		(2)
BRAIN 		(4)
BREAST 		(13)
CELL-LINE 		(1)
CERVIX 		(4)
HEART 		(3)
HELA 		(1)
LIVER 		(2)
OTHER 		(5)
SKIN 		(1)
UTERUS 		(1)
XRN.ip

Sense strand
GATCTCACGCATACAACAGGAATCTGGATGCAAAATACAGATAGCTCCTGGTAATGTTACATTCTCATGGTATTTTCAGTGTGACTAGAAAACTAGCTTTTTTTTTTTTTTAAGCCTTCTAGTAACAATAATGCTACTTTTAATCTTTTGACCTGAAGTTATCTGTTTGTTTTAAATTGTAGACAGTGGTGGCCTTCCAGAAAGGTCCTGTATGTTAACTGGAACACCTGAA
...............................................................................................((((............))))....(((((.......)))))................................................................................................
......................................................................................87...................................................140..........................................................................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		DRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR037937(GSM510475)
293cand2. (cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		DRR001482(DRX001036)
"Hela long total cell fraction, control". (hela)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR191549(GSM715659)
105genomic small RNA (size selected RNA from . (breast)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR037935(GSM510473)
293cand3. (cell line)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR191407(GSM715517)
81genomic small RNA (size selected RNA from t. (breast)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR343333(GSM796036)
KSHV (HHV8). (cell line)		SRR189782SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577739(Rovira)
total RNA. (breast)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR191579(GSM715689)
102genomic small RNA (size selected RNA from . (breast)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR040042(GSM532927)
G428N. (cervix)		SRR037936(GSM510474)
293cand1. (cell line)
.............................................................................................................TTAAGCCTTCTAGTAACAATAATGCTACTTTTAATCTTTTGACCTGAAGTTATCTGTTTGTTTTAAATTGTAG..................................................73110.0010.00-10.00--------------------------------------
.................AGGAATCTGGATGCAAAATACAGATAG............................................................................................................................................................................................2717.007.00----7.00-----------------------------------
...........................................................................................ACTAGCTTTTTTTTTTTTACC........................................................................................................................216.000.004.00--2.00------------------------------------
...........................................................................................ACTAGCTTTTTTTTTTTTTACC.......................................................................................................................225.000.005.00---------------------------------------
...............................................................................................................AAGCCTTCTAGTAACAATAATGCTACTTTTAATCTTTTGACCTGAAGTTATCTGTTTGTTTTAAATTGTAG..................................................7114.004.00-4.00--------------------------------------
...........................................................................................ACTAGCTTTTTTTTTTACC..........................................................................................................................194.000.004.00---------------------------------------
...........................................................................................ACTAGCTTTTTTTTTTTACC.........................................................................................................................204.000.003.00--1.00------------------------------------
......................................................................................................................................................................................................AGAAAGGTCCTGTATGTTAACTGGA.........2514.004.00--2.00---------2.00---------------------------
...........................................................................................ACTAGCTTTTTTTTTTTTTTACC......................................................................................................................233.000.003.00---------------------------------------
.............CAACAGGAATCTGGATGC.........................................................................................................................................................................................................1813.003.00--3.00-------------------------------------
...........................................................................................ACTAGCTTTTTTTTTTTTAC.........................................................................................................................202.000.002.00---------------------------------------
...............ACAGGAATCTGGATGCAAAATAC..................................................................................................................................................................................................2312.002.00--2.00-------------------------------------
..........ATACAACAGGAATCTGGATGCAAAATACA.................................................................................................................................................................................................2912.002.00--------2.00-------------------------------
...................................................................................ACTAGAAAACTAGCTTTTTTTTTTTTTCAAG......................................................................................................................312.000.00-----2.00----------------------------------
........................................................................................................................................................CTGAAGTTATCTGTTTGTTTTAAATTGTAG..................................................3012.002.00--------------1.00--------------------1.00----
...........................................................................................ACTAGCTTTTTTTTTTTTTTCAGG.....................................................................................................................241.000.001.00---------------------------------------
...........TACAACAGGAATCTGGATG..........................................................................................................................................................................................................1911.001.00---------1.00------------------------------
...............ACAGGAATCTGGATGCAAAATA...................................................................................................................................................................................................2211.001.00--------------------1.00-------------------
..................................................................................................TTTTTTTTTTTTTAAGCCTTACCA..............................................................................................................241.000.001.00---------------------------------------
....................................................................................................................................................................................................CCAGAAAGGTCCTGTATGTTAACT............2411.001.00----------------------1.00-----------------
................CAGGAATCTGGATGCAAAATACAG................................................................................................................................................................................................2411.001.00----------------------------------1.00-----
..................................................................................................................................................................................................................TATGTTAACTGGAACACCTGAA2211.001.00---------1.00------------------------------
................................................................................................................................TAATGCTACTTTTAATCTTTTGACCTGAAGTTATCTGTTTGTTTTAAATTGTAG..................................................5411.001.00-------1.00--------------------------------
..................................................................ATGGTATTTTCAGTGTGACTAGAAAACTAGC.......................................................................................................................................3111.001.00--------------------------1.00-------------
...................................................................................ACTAGAAAACTAGCTTTTTTTTTTTCAAG........................................................................................................................291.000.00-----1.00----------------------------------
............................................................................................CTAGCTTTTTTTTTTTTGGTG.......................................................................................................................211.000.00-----1.00----------------------------------
..........................................................................................AACTAGCTTTTTTTTCTTG...........................................................................................................................191.000.00---1.00------------------------------------
........................TGGATGCAAAATACAGATAGCTCC........................................................................................................................................................................................2411.001.00--------------------------------1.00-------
...........................................................................................ACTAGCTTTTTTTTTGGAG..........................................................................................................................191.000.001.00---------------------------------------
........................................................................................................................................................................................................AAAGGTCCTGTATGTTAACTGGAACACC....2811.001.00-------------------------------1.00--------
...........................................................................................................................................................................TTAAATTGTAGACAGTGGT..........................................1911.001.00--1.00-------------------------------------
...........................................................................................................................................................................................GGTGGCCTTCCAGAAAGGTCCTG......................2311.001.00-------------1.00--------------------------
...............................................CTGGTAATGTTACATTCTCAAC...................................................................................................................................................................221.000.00-------------------------1.00--------------
..................................................................................................TTTTTTTTTTTTTAAGCCTTGC................................................................................................................221.000.001.00---------------------------------------
...........................................................................................ACTAGCTTTTTTTTTTTTGC.........................................................................................................................201.000.001.00---------------------------------------
................................AAATACAGATAGCTCATG......................................................................................................................................................................................181.000.00---------------1.00------------------------
.......................................................................................................................TAGTAACAATAATGCCA................................................................................................171.000.00---------------------------------1.00------
...........TACAACAGGAATCTGGATGCA........................................................................................................................................................................................................2111.001.00------1.00---------------------------------
...........................................................................................ACTAGCTTTTTTTTTTTTTTCGG......................................................................................................................231.000.00---1.00------------------------------------
..........................................................................................................................................................................................................AGGTCCTGTATGTTAACTG...........1911.001.00------1.00---------------------------------
...........................................................................................ACTAGCTTTTTTTTTTTTTTTCCC.....................................................................................................................241.000.001.00---------------------------------------
..............................................................................................AGCTTTTTTTTTTTTTTAAGGGA...................................................................................................................231.000.001.00---------------------------------------
..............................................................................................................................................................................................................CCTGTATGTTAACTGGAACACCTG..2411.001.00-----------------1.00----------------------
............ACAACAGGAATCTGGCTG..........................................................................................................................................................................................................181.000.00-----------------------------1.00----------
.................AGGAATCTGGATGCAA.......................................................................................................................................................................................................1611.001.00----------------------------1.00-----------
.....................................................................................................................................................................................GACAGTGGTGGCCTTCCTGA...............................201.000.00------------------------1.00---------------
......................................................................................................................................TACTTTTAATCTTTTTTTG...............................................................................191.000.00------------------------------------1.00---
......................................................................................................................................................ACCTGAAGTTATCTGTTTGTTT............................................................2211.001.00---1.00------------------------------------
.........................................................................................................................................................TGAAGTTATCTGTTTGTTTTAAATTGTTG..................................................291.000.00---------------------------1.00------------
...................................................................................................................................................................................................TCCAGAAAGGTCCTGTATGT.................2011.001.00-----------------------1.00----------------
................CAGGAATCTGGATGCAAAATACAGAA..............................................................................................................................................................................................261.000.00---------------------1.00------------------
......................................................................................................TTTTTTTTTAAGCCTTGCA...............................................................................................................191.000.00-----1.00----------------------------------
............................................................................................................................................................................TAAATTGTAGACAGTGGTGG........................................2011.001.00--1.00-------------------------------------
...........................................................................................ACTAGCTTTTTTTTTTTTTTTACC.....................................................................................................................241.000.001.00---------------------------------------
...........................................................................................ACTAGCTTTTTTTTTTTTCGG........................................................................................................................211.000.00---1.00------------------------------------
.......CGCATACAACAGGAATCTGGATGCA........................................................................................................................................................................................................2511.001.00------------------1.00---------------------
...............................................................................................................................................................TATCTGTTTGTTTTAAATTGTAG..................................................2311.001.00-------------------1.00--------------------
....................................................................................................................TTCTAGTAACAATAATGCTACTTTTAATCTTTTGACCTGAAGTTATCTGTTTGTTTTAAATTGTAG..................................................6611.001.00-------1.00--------------------------------
....................................................................................................TTTTTTTTTTTAAGCCGTTG................................................................................................................201.000.00---1.00------------------------------------
..................................................................................................................................................TTTGACCTGAAGTTATCTGTTTGT..............................................................2411.001.00-----------1.00----------------------------
.......................................................................................................................................................................................................................TAACTGGAACACCTGAAAA191.000.00-------------------------------------1.00--
...........................................................................................ACTAGCTTTTTTTTTTTTTTTTAC.....................................................................................................................241.000.001.00---------------------------------------
......................................................................................................................................................................................................AGAAAGGTCCTGTATGTT................1811.001.00-----------1.00----------------------------
.........................................................................................................................................................................................................AAGGTCCTGTATGTTAACTG...........2011.001.00------1.00---------------------------------
...................................................................................ACTAGAAAACTAGCTTTTTTTTTTTTTAAG.......................................................................................................................301.000.00-----1.00----------------------------------
.............................................................................AGTGTGACTAGAAAACTAGCT......................................................................................................................................2111.001.00------------------------------1.00---------
......................................................................................................................................................................................................AGAAAGGTCCTGTATGTTAACTGGAACACC....3011.001.00----------------1.00-----------------------
...................................................................................ACTAGAAAACTAGCTTTTTTTCAAG............................................................................................................................251.000.00-----1.00----------------------------------
...................................................................................................................................................................................................TCCAGAAAGGTCCTGTATGTTAACT............2511.001.00--1.00-------------------------------------

Antisense strand
GATCTCACGCATACAACAGGAATCTGGATGCAAAATACAGATAGCTCCTGGTAATGTTACATTCTCATGGTATTTTCAGTGTGACTAGAAAACTAGCTTTTTTTTTTTTTTAAGCCTTCTAGTAACAATAATGCTACTTTTAATCTTTTGACCTGAAGTTATCTGTTTGTTTTAAATTGTAGACAGTGGTGGCCTTCCAGAAAGGTCCTGTATGTTAACTGGAACACCTGAA
...............................................................................................((((............))))....(((((.......)))))................................................................................................
......................................................................................87...................................................140..........................................................................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		DRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR037937(GSM510475)
293cand2. (cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		DRR001482(DRX001036)
"Hela long total cell fraction, control". (hela)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR191549(GSM715659)
105genomic small RNA (size selected RNA from . (breast)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR037935(GSM510473)
293cand3. (cell line)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR191407(GSM715517)
81genomic small RNA (size selected RNA from t. (breast)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR343333(GSM796036)
KSHV (HHV8). (cell line)		SRR189782SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577739(Rovira)
total RNA. (breast)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR191579(GSM715689)
102genomic small RNA (size selected RNA from . (breast)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR040042(GSM532927)
G428N. (cervix)		SRR037936(GSM510474)
293cand1. (cell line)
.......................................................................................................................TAGTAACAATAATGCCCGA.............................................................................................. 191.000.00----------1.00-----------------------------
.......................................................................................................................TAGTAACAATAATGCCAGA.............................................................................................. 191.000.00----------1.00-----------------------------
......................................................................................................AGAAGGCTTAAAAAAAAA................................................................................................................ 1860.170.17--------------------------------------0.17-
.................................................................................................AAGGCTTAAAAAAAAAAAAAA.................................................................................................................. 2160.170.17---------------------------------------0.17