| (1) AGO1.ip OTHER.mut | (1) B-CELL | (1) BREAST | (15) CELL-LINE | (2) HELA | (2) LIVER | (6) OTHER | (1) RRP40.ip | (6) SKIN | (1) XRN.ip |
| GATACAAATTTAAATGCTTATCAGTTTCAGATATGTTACTATGTAATTAAAATATTATAAAATATACAGGTGCATATTTTCCTTTGTAATTAAGTATAGTAATGCATGTATTATAATGTTTTAAGGAATAGCCATATTTTTAAAGCATAAGAACTTTTAACTAAGGTGCATTTAGTAATTATTCATATTTCATTTTTCAGCTAGGTGACTTTTATCTAGAACTTCACTGGGATTTTCAAAGCTGGGGTAA ....................................................................((((((......((((.((....((((...((((((....)))))).(((((((((.(((((....))))))))))))))....))))...)).)))))))))).............................................................................. ....................................................................69................................................................................................................183................................................................. | Size | Perfect hit | Total Norm | Perfect Norm | SRR189782 | SRR207110(GSM721072) Nuclear RNA. (cell line) | SRR037937(GSM510475) 293cand2. (cell line) | SRR189784 | SRR343335 | SRR037935(GSM510473) 293cand3. (cell line) | SRR039625(GSM531988) HBV(-) HCV(-) HCC Tissue Sample. (liver) | SRR037942(GSM510480) 293DroshaTN_cand5. (cell line) | SRR037936(GSM510474) 293cand1. (cell line) | SRR207112(GSM721074) RRP40 knockdown. (RRP40 cell line) | SRR189785 | SRR037939(GSM510477) 293cand5_rep1. (cell line) | SRR189781(GSM714641) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR343334 | SRR189779(GSM714639) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR029124(GSM416753) HeLa. (hela) | SRR189787 | SRR037943(GSM510481) 293DcrTN. (cell line) | SRR330864(SRX091702) tissue: skin psoriatic involveddisease state:. (skin) | SRR330884(SRX091722) tissue: skin psoriatic uninvolveddisease stat. (skin) | SRR207114(GSM721076) "IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line) | SRR330919(SRX091757) tissue: normal skindisease state: normal. (skin) | SRR033713(GSM497058) Burkitt Lymphoma (BL115). (B cell) | SRR191595(GSM715705) 72genomic small RNA (size selected RNA from t. (breast) | SRR207115(GSM721077) XRN1&2 knockdown. (XRN1/XRN2 cell line) | SRR330858(SRX091696) tissue: skin psoriatic involveddisease state:. (skin) | SRR207116(GSM721078) Nuclear RNA. (cell line) | SRR037944(GSM510482) 293DcrTN_cand5. (cell line) | SRR039623(GSM531986) HCV(+) HCC Tissue Sample. (liver) | SRR037933(GSM510471) 293cand4_rep2. (cell line) | SRR330905(SRX091743) tissue: normal skindisease state: normal. (skin) | DRR001489(DRX001043) "Hela short nuclear cell fraction, control". (hela) | SRR444042(SRX128890) Sample 3cDNABarcode: AF-PP-335: ACG CTC TTC C. (skin) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| .................................................................................................................................................................TAAGGTGCATTTAGTGCA....................................................................... | 18 | 23.00 | 0.00 | - | - | 7.00 | - | - | 4.00 | 1.00 | 2.00 | 2.00 | 2.00 | - | 2.00 | - | - | - | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | |
| .................................................................................................................................................................TAAGGTGCATTTAGTGCAG...................................................................... | 19 | 20.00 | 0.00 | 16.00 | - | - | 1.00 | 1.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | |
| .....................................................................................................................................................................................................................................GGATTTTCAAAGCTGGG.... | 17 | 1 | 10.00 | 10.00 | - | 10.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .........................................................................ATATTTTCCTTTGTAATACT............................................................................................................................................................. | 20 | 5.00 | 0.00 | - | - | - | - | 4.00 | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .................................................................................................................................................................TAAGGTGCATTTAGTGCAT...................................................................... | 19 | 3.00 | 0.00 | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ......................................................................................................................................................................................................................TCTAGAACTTCACTGGGAT................. | 19 | 1 | 3.00 | 3.00 | - | - | - | - | - | - | 3.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ............................................................................................................................................................................................................................ACTTCACTGGGATTTTCAAAGCTG...... | 24 | 1 | 2.00 | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - |
| .................................................................................................................................................................TAAGGTGCATTTAGTGTAG...................................................................... | 19 | 2.00 | 0.00 | 1.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .................................................................................................................................................................TAAGGTGCATTTAGTTCA....................................................................... | 18 | 2.00 | 0.00 | - | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ........................................................ATAAAATATACAGGTGCACAAG............................................................................................................................................................................ | 22 | 1.00 | 0.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .............................................................................................................................................................................................................................CTTCACTGGGATTTTCAAAGCTGGGG... | 26 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .................................................................................................................................................................TAAGGTGCATTTAGTTCAG...................................................................... | 19 | 1.00 | 0.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ........................................................................................................................................................ACTTTTAACTAAGGTGCATTTAGTAATTAT.................................................................... | 30 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..........................................................AAAATATACAGGTGCATG.............................................................................................................................................................................. | 18 | 3 | 1.00 | 0.33 | - | - | - | - | 0.67 | - | - | - | - | - | - | - | - | 0.33 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ............................................................................................................................................................................TAGTAATTATTCATATACAG.......................................................... | 20 | 1.00 | 0.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .................................................................................................................................................................................................................................ACTGGGATTTTCAAAGCTGGGGC.. | 23 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ............................................................................................................................................................................................................................ACTTCACTGGGATTTTCAAAGC........ | 22 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - |
| ....................................................................................................................................................................................................................................GGGATTTTCAAAGCTGGG.... | 18 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - |
| .........................................................................ATATTTTCCTTTGTAATAC.............................................................................................................................................................. | 19 | 1.00 | 0.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ..........................................................................................................................................................................................................................GAACTTCACTGGGATTTTCAAAGC........ | 24 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - |
| ...................................................................................................................................................................................................................................TGGGATTTTCAAAGCATGG.... | 19 | 1.00 | 0.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ........................................................................................................................................................................................................................TAGAACTTCACTGGGATTTTCAAAGCTGGG.... | 30 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ....................TCAGTTTCAGATATGTATAG.................................................................................................................................................................................................................. | 20 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .............................................................................................................................................................................................................................CTTCACTGGGATTTTCAAAGCTGGG.... | 25 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - |
| .................................................................................................................................................CATAAGAACTTTTAAACGA...................................................................................... | 19 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ....................................................................................................................................................................................................................................GGGATTTTCAAAGCTGGGTGC. | 21 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - |
| .......................................................................................................................................ATTTTTAAAGCATAACAA................................................................................................. | 18 | 1.00 | 0.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...................................................................................................................................................................................................................TTATCTAGAACTTCACTGGGATTTTCAAAG......... | 30 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - |
| ...........................................................................................................................................................................................................................................TCAAAGCTGGGGTAA | 15 | 6 | 0.50 | 0.50 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 0.50 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...................................................................................................................................................................................................................................TGGGATTTTCAAAGCTG...... | 17 | 3 | 0.33 | 0.33 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 0.33 | - | - |
| ..........................................................AAAATATACAGGTGCAT............................................................................................................................................................................... | 17 | 3 | 0.33 | 0.33 | - | - | - | - | - | - | - | - | - | - | - | - | - | 0.33 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ........................................................................................................................................................................................................................................TTTTCAAAGCTGGGGTA. | 17 | 3 | 0.33 | 0.33 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 0.33 | - |
| .........................................................................................................................................................................................................................AGAACTTCACTGGGAT................. | 16 | 6 | 0.17 | 0.17 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 0.17 |
| GATACAAATTTAAATGCTTATCAGTTTCAGATATGTTACTATGTAATTAAAATATTATAAAATATACAGGTGCATATTTTCCTTTGTAATTAAGTATAGTAATGCATGTATTATAATGTTTTAAGGAATAGCCATATTTTTAAAGCATAAGAACTTTTAACTAAGGTGCATTTAGTAATTATTCATATTTCATTTTTCAGCTAGGTGACTTTTATCTAGAACTTCACTGGGATTTTCAAAGCTGGGGTAA ....................................................................((((((......((((.((....((((...((((((....)))))).(((((((((.(((((....))))))))))))))....))))...)).)))))))))).............................................................................. ....................................................................69................................................................................................................183................................................................. | Size | Perfect hit | Total Norm | Perfect Norm | SRR189782 | SRR207110(GSM721072) Nuclear RNA. (cell line) | SRR037937(GSM510475) 293cand2. (cell line) | SRR189784 | SRR343335 | SRR037935(GSM510473) 293cand3. (cell line) | SRR039625(GSM531988) HBV(-) HCV(-) HCC Tissue Sample. (liver) | SRR037942(GSM510480) 293DroshaTN_cand5. (cell line) | SRR037936(GSM510474) 293cand1. (cell line) | SRR207112(GSM721074) RRP40 knockdown. (RRP40 cell line) | SRR189785 | SRR037939(GSM510477) 293cand5_rep1. (cell line) | SRR189781(GSM714641) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR343334 | SRR189779(GSM714639) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR029124(GSM416753) HeLa. (hela) | SRR189787 | SRR037943(GSM510481) 293DcrTN. (cell line) | SRR330864(SRX091702) tissue: skin psoriatic involveddisease state:. (skin) | SRR330884(SRX091722) tissue: skin psoriatic uninvolveddisease stat. (skin) | SRR207114(GSM721076) "IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line) | SRR330919(SRX091757) tissue: normal skindisease state: normal. (skin) | SRR033713(GSM497058) Burkitt Lymphoma (BL115). (B cell) | SRR191595(GSM715705) 72genomic small RNA (size selected RNA from t. (breast) | SRR207115(GSM721077) XRN1&2 knockdown. (XRN1/XRN2 cell line) | SRR330858(SRX091696) tissue: skin psoriatic involveddisease state:. (skin) | SRR207116(GSM721078) Nuclear RNA. (cell line) | SRR037944(GSM510482) 293DcrTN_cand5. (cell line) | SRR039623(GSM531986) HCV(+) HCC Tissue Sample. (liver) | SRR037933(GSM510471) 293cand4_rep2. (cell line) | SRR330905(SRX091743) tissue: normal skindisease state: normal. (skin) | DRR001489(DRX001043) "Hela short nuclear cell fraction, control". (hela) | SRR444042(SRX128890) Sample 3cDNABarcode: AF-PP-335: ACG CTC TTC C. (skin) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| .................................................................................................................................................................TAAGGTGCATTTAGTCATG...................................................................... | 19 | 1.00 | 0.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ........................................ATGTAATTAAAATATTCC................................................................................................................................................................................................ | 18 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .................................................................................................................................................................TAAGGTGCATTTAGTTATG...................................................................... | 19 | 1.00 | 0.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ..............................................TTAAAATATTATAAAATAGAT....................................................................................................................................................................................... | 21 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |