ID: uc001dex.3_intron_11_0_chr1_70801783_r.3p
GENE: (1)
chr1:70801733-70801982-


(1)
AGO2.ip 		(1)
BREAST 		(10)
CELL-LINE 		(1)
HEART 		(2)
LIVER 		(1)
OTHER 		(2)
SKIN 		(1)
XRN.ip

Sense strand
GGTTGGAGAGTACATTGTACTCAGAAATCATGGTATCTTCTGACTTTAAATTTGCTATATAAGCAATATTATTTTGCAGTCACAGTATTTTTGCTTAAAATCTGCCAGTGAAATTTCTGAAGGAGCTGAAACCACTTTTAAGTAAATGTTCTTATGTTTTTACACCTTCTAATTTATTTATTTTATTTTATTTTTTTTAGGAAATACTCCTTTACACCTTGCTGTGATGTTAGGAAATAAAGGTTAGTAA
..........................................................................................................((((...((((((((((((.(((((.......(((((((((.......(((....))).......))))))))).....))))).)))))))))))).))))..........................................
........................................................................................................105....................................................................................................208........................................
SizePerfect hitTotal NormPerfect NormSRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189782SRR207110(GSM721072)
Nuclear RNA. (cell line)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR189785SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
............................................................................................................................................................................TTTATTTATTTTATTTTATTTTTTTCAAG.................................................291123.000.00550.00495.0044.0032.00--2.00------------
.............................................................................................................................................................................TTATTTATTTTATTTTATTTTTTTCAAG.................................................28884.000.00404.00433.0030.0017.00---------------
..............................................................................................................................................................................TATTTATTTTATTTTATTTTTTTCAAG.................................................27198.000.0088.00103.003.004.00---------------
.............................................................................................................................................................................TTATTTATTTTATTTTATTTTTTTCAAT.................................................2819.000.008.0010.001.00----------------
............................................................................................................................................................................TTTATTTATTTTATTTTATTTTTTTCAAT.................................................2918.000.0011.005.00-2.00---------------
...........................................................................................................................................................................ATTTATTTATTTTATTTTATTTTTAAG....................................................2716.000.005.005.001.005.00---------------
.............................................................................................................................................................................TTATTTATTTTATTTTATTTTTTTTCAAG................................................2912.000.006.005.00-1.00---------------
............................................................................................................................................................................TTTATTTATTTTATTTTATTTTTTTTCAAG................................................3011.000.007.004.00-----------------
..............................................................................................................................................................................TATTTATTTTATTTTATTTTTTTCTAG.................................................278.000.002.005.00-1.00---------------
...........................................................................................................................................................................ATTTATTTATTTTATTTTATTTTTTTCAAG.................................................307.000.005.001.001.00----------------
............................................................................................................................................................................TTTATTTATTTTATTTTATTTTTTTCAAA.................................................297.000.002.005.00-----------------
............................................................................................................................................................................TTTATTTATTTTATTTTATTTTTTTTATAG................................................307.000.001.002.002.002.00---------------
..........................................................................................................................................................................AATTTATTTATTTTATTTTATTTTTTG.....................................................2736.331.003.002.670.330.33---------------
.............................................................................................................................................................................TTATTTATTTTATTTTATTTTTTTCAAA.................................................286.000.003.003.00-----------------
........................................................................................................................................................................CTAATTTATTTATTTTATTTTATTTTTTCAG...................................................316.000.001.004.001.00----------------
........................................................................................................................................................................CTAATTTATTTATTTTATTTTATTTTTAG.....................................................296.000.001.003.00-2.00---------------
...................................................................................................................................................................................ATTTTATTTTATTTTTTTTAGCTGG..............................................255.000.00----2.003.00-------------
.............................................................................................................................................................................TTATTTATTTTATTTTATTTTTTTCAA..................................................274.000.001.002.00-1.00---------------
...........................................................................................................................................................................ATTTATTTATTTTATTTTATTTCAG......................................................254.000.001.00-2.001.00---------------
..........................................................................................................................................................................AATTTATTTATTTTATTTTATTTTTTTTAG..................................................3013.003.00---3.00---------------
...............................................................................................................................................................................ATTTATTTTATTTTATTTTTTTCTAG.................................................263.000.001.002.00-----------------
..............................................................................................................................................................................TATTTATTTTATTTTATTTTTTTCAA..................................................263.000.002.001.00-----------------
............................................................................................................................................................................TTTATTTATTTTATTTTATTTTTTTCAA..................................................283.000.002.00--1.00---------------
........................................................................................................................................................................................................................CCTTGCTGTGATGTTAGG................1813.003.00--------3.00----------
........................................................................................................................................................................CTAATTTATTTATTTTATTTTTAG..........................................................243.000.00-3.00-----------------
............................................................................................................................................................................TTTATTTATTTTATTTTATTTTTTTCATG.................................................293.000.002.001.00-----------------
........................................................................................................................................................................CTAATTTATTTATTTTATTTTATTTTTTTTG...................................................313.000.002.00--1.00---------------
..............................................................................................................................................................................TATTTATTTTATTTTATTTTTTTCAAT.................................................272.000.001.001.00-----------------
...........................................................................................................................................................................ATTTATTTATTTTATTTTATTTTCATT....................................................272.000.00----2.00--------------
...........................................................................................................................................................................ATTTATTTATTTTATTTTATTTCTTC.....................................................262.000.00----1.001.00-------------
.............................................................................................................GAAATTTCTGAAGGAGCTGAAAC......................................................................................................................2312.002.00----------2.00--------
...............................................................................................................................................................................ATTTATTTTATTTTATTTTTTTCAAT.................................................262.000.002.00------------------
..............................................................................................................................................................................TATTTATTTTATTTTATTTTTTTCAAA.................................................272.000.001.001.00-----------------
.............................................................................................................................................................................TTATTTATTTTATTTTATTTTTTTCATG.................................................282.000.00-2.00-----------------
............................................................................................................................................................................TTTATTTATTTTATTTTATTTTTTTCAGG.................................................292.000.001.001.00-----------------
..........................................................................................................................................................................AATTTATTTATTTTATTTTATTTTATTC....................................................282.000.00----2.00--------------
............................................................................................................................................................................TTTATTTATTTTATTTTATTTTTTTCTAG.................................................292.000.00-2.00-----------------
...........................................................................................................................................................................ATTTATTTATTTTATTTTATTTCG.......................................................242.000.00----2.00--------------
.....................................................................................................................................................................CTTCTAATTTATTTATTTTATTTTATTTTTTTTA...................................................3412.002.00-1.00-1.00---------------
............................................................................................................................................................................TTTATTTATTTTATTTTATTTTTTTCTTG.................................................292.000.001.001.00-----------------
......................................................................................................................................................................TTCTAATTTATTTATTTTATTTTATTTTTTTTAG..................................................3412.002.001.00-1.00----------------
................................................................................................................................................................................TTTATTTTATTTTATTTTTTTTAGCCGG..............................................282.000.00----2.00--------------
.............................................................................................................................................................................TTATTTATTTTATTTTATTTTTTTCAGG.................................................282.000.001.00---1.00--------------
..........................................................................................................................................................................AATTTATTTATTTTATTTTATTTTCCTG....................................................282.000.00---2.00---------------
..................................................................................................................................................................CACCTTCTAATTTATTTATTTTCG................................................................242.000.00--2.00----------------
...............................................................................................................................................................................ATTTATTTTATTTTATTTTTTTTAG..................................................2561.331.330.170.17-1.00---------------
.............................................................................................................................................................TTTTACACCTTCTAATTTATTCA......................................................................231.000.00---1.00---------------
..................................................................................................AATCTGCCAGTGAAACACT.....................................................................................................................................191.000.00-------1.00-----------
...............................................................................................................................................................................ATTTATTTTATTTTATTTTTTTCG...................................................241.000.00--1.00----------------
................................................................................................................................................................TACACCTTCTAATTTATTAAA.....................................................................211.000.001.00------------------
...............................................................................................................................................................................ATTTATTTTATTTTATTTTTTTCATG.................................................261.000.001.00------------------
..............................................................................................................................................................................TATTTATTTTATTTTATTTTTTTCGAG.................................................271.000.00----1.00--------------
........................................................................TTTGCAGTCACAGTATTTTTGC............................................................................................................................................................2211.001.00----1.00--------------
..........................................................................................................................................................................AATTTATTTATTTTATTTTATTTTTTTTTTG.................................................311.000.00---1.00---------------
..........................................................................................................................................................................AATTTATTTATTTTATTCG.............................................................191.000.001.00------------------
..................................................................................................................................................................................TATTTTATTTTATTTTTTTTAGCTGG..............................................261.000.00----1.00--------------
..................................................................................................AATCTGCCAGTGAAAGCAG.....................................................................................................................................191.000.00-------1.00-----------
.............................................................................................................................................................................TTATTTATTTTATTTTATTTTTTTCTTG.................................................281.000.00--1.00----------------
...................................................................................................................................................................................ATTTTATTTTATTTTTTTTAGGG................................................231.000.00-----1.00-------------
........................................................................................................................................................................CTAATTTATTTATTTTCTTA..............................................................201.000.00--1.00----------------
...........................................................................................................................................................................ATTTATTTATTTTATTTTATTTCCTC.....................................................261.000.00----1.00--------------
..............................................................................................................................................................................TATTTATTTTATTTTATTTTTTTAAGG.................................................271.000.001.00------------------
...........................................................................................................................................................................ATTTATTTATTTTATTTTATTTTTAAT....................................................271.000.001.00------------------
....................................................................................................................................CACTTTTAAGTAAATGCTA...................................................................................................191.000.00-----------------1.00-
...........................................................................................................................................................................ATTTATTTATTTTATTTTATTCTTG......................................................251.000.00--1.00----------------
....................................................................................................................................................................................................................TACACCTTGCTGTGATGTTAGG................2211.001.00-----------1.00-------
.....................................................................................................................................................................CTTCTAATTTATTTATTTTATTTTATTTTTTTTAG..................................................3511.001.00-1.00-----------------
............................................................................................................................................................TTTTTACACCTTCTAATTTACTTA......................................................................241.000.00--1.00----------------
........................................................................................................................................................................CTAATTTATTTATTTTATTTTTTTG.........................................................251.000.00---1.00---------------
...........................................................................................................................................................................ATTTATTTATTTTATTTTATTTTTATG....................................................271.000.001.00------------------
...........................................................................................................................................................................ATTTATTTATTTTATTTTATTTTCAG.....................................................261.000.00---1.00---------------
..............................................................................................................................................................................TATTTATTTTATTTTATCG.........................................................191.000.001.00------------------
..............................................................................................................................................................................TATTTATTTTATTTTATTTTTTCAGC..................................................261.000.00----1.00--------------
.........................................................................................................................................................................................................AAATACTCCTTTACACC................................1711.001.00------------1.00------
..................................................................................................AATCTGCCAGTGAAATTTTGT...................................................................................................................................211.000.00-------1.00-----------
............................................................................................................................................................................TTTATTTATTTTATTTTATTTTTTTTAG..................................................2811.001.00--1.00----------------
...........................................................................................................................................................................ATTTATTTATTTTATTTTAGAGT........................................................231.000.00----1.00--------------
............................................................................................................................................................................TTTATTTATTTTATTTTATTTTTTTTCAA.................................................291.000.00-1.00-----------------
..................................................................................................AATCTGCCAGTGAAATACTT....................................................................................................................................201.000.00-------1.00-----------
..........................................................................................................................................................................AATTTATTTATTTTATTTTATTTTTT......................................................2631.001.000.670.33-----------------
..................................................................................................................................................................................TATTTTATTTTATTTTTTTTAGCCGG..............................................261.000.00----1.00--------------
...............................................................................................................................................................................ATTTATTTTATTTTATTTTTTTTAGG.................................................2611.001.00----1.00--------------
..............................................................................................................................................................................TATTTATTTTATTTTATTTTTTTCATG.................................................271.000.00-1.00-----------------
.............................................................................................................................................................................TTATTTATTTTATTTTATTTTTTTCGGG.................................................281.000.00----1.00--------------
........................................................................................................................................................................CTAATTTATTTATTTTATTTTATTTTTTTTT...................................................311.000.00-1.00-----------------
............................................................................................................................................................TTTTTACACCTTCTAATTTATTTATTTTA.................................................................2911.001.00------1.00------------
...................................................................................................................................................................................ATTTTATTTTATTTTTTTTAGCATG..............................................251.000.00-----1.00-------------
...............................................................................................................................................................................ATTTATTTTATTTTATTTTTTTCACG.................................................261.000.001.00------------------
..............................................................................................................................................................................TATTTATTTTATTTTATTTTTTTTCAAG................................................281.000.00-1.00-----------------
.................................................................................................................................................................................TTATTTTATTTTATTTTTTTTAGTATG..............................................271.000.00------1.00------------
.............................................................................................................................................................................TTATTTATTTTATTTTATTTTTTTCGAG.................................................281.000.00-1.00-----------------
.............................................................................................................................................................................TTATTTATTTTATTTTATCG.........................................................201.000.00-1.00-----------------
...............................................................................................................................................................................ATTTATTTTATTTTATTTTTTTAATG.................................................261.000.00-1.00-----------------
............................................................................................................................................................................TTTATTTATTTTATTTTATTTTTTTCGAG.................................................291.000.00-1.00-----------------
..........................................................................................................................................................................AATTTATTTATTTTATTTTATTTTATTG....................................................281.000.00------1.00------------
.............................................................................................................................................................................TTATTTATTTTATTTTATTTTTTCAAT..................................................271.000.00-1.00-----------------
............................................................................................................................................................................TTTATTTATTTTATTTTATTTTTTTTTTAG................................................301.000.00-1.00-----------------
........................................................................................................................................................................CTAATTTATTTATTTTCG................................................................181.000.00--1.00----------------
...........................................................................................................................................................................ATTTATTTATTTTATTTTATTTTTTCAT...................................................281.000.00-1.00-----------------
.............................................................................................................................................................................TTATTTATTTTATTTTATTTTTTTCAAC.................................................281.000.00-1.00-----------------
.................................................................................................................................................................................TTATTTTATTTTATTTTTTTTAGCTGG..............................................271.000.00-----1.00-------------
..............................................................................................................................................................................TATTTATTTTATTTTATTTTTTTCACG.................................................271.000.00-1.00-----------------
...............................................................................................................................................................................ATTTATTTTATTTTATTTTTTTTATTTG...............................................281.000.001.00------------------
...............................................................................................................................................................................ATTTATTTTATTTTATTTTTTTTAATG................................................271.000.00---1.00---------------
.............................................................................................................................................................TTTTACACCTTCTAATTTATTTATTTCA.................................................................281.000.00------1.00------------
............................................................................................................................................................................TTTATTTATTTTATTTTATTTTTTTCACG.................................................291.000.00-1.00-----------------
...................................................................................................................TCTGAAGGAGCTGAAACCACTTTT...............................................................................................................2411.001.00---------------1.00---
..............................................................................................................................................................................TATTTATTTTATTTTATTTTTTTTAAAT................................................281.000.00-1.00-----------------
.....................................................................................................................................................................CTTCTAATTTATTTATTTTA.................................................................2020.500.50------0.50------------
...............................................................................................................................................................................................................................GTGATGTTAGGAAATAAAG........1920.500.50-----------0.50-------
..........................................................................................................................................................................AATTTATTTATTTTATTTTATTTTTTA.....................................................2730.331.000.33------------------
..........................................................................................................................................................................AATTTATTTATTTTATTTTATTTTTTT.....................................................2730.330.33-0.33-----------------
........................................................................................................................................................................CTAATTTATTTATTTTATTTTA............................................................2270.290.290.14--0.14---------------
.................................................................................................................................................................................................................................GATGTTAGGAAATAAAGAAT.....2040.250.25------------------0.25
.................................................................................................................................................................................................................................GATGTTAGGAAATAAAG........1740.250.25--------0.25----------

Antisense strand
GGTTGGAGAGTACATTGTACTCAGAAATCATGGTATCTTCTGACTTTAAATTTGCTATATAAGCAATATTATTTTGCAGTCACAGTATTTTTGCTTAAAATCTGCCAGTGAAATTTCTGAAGGAGCTGAAACCACTTTTAAGTAAATGTTCTTATGTTTTTACACCTTCTAATTTATTTATTTTATTTTATTTTTTTTAGGAAATACTCCTTTACACCTTGCTGTGATGTTAGGAAATAAAGGTTAGTAA
..........................................................................................................((((...((((((((((((.(((((.......(((((((((.......(((....))).......))))))))).....))))).)))))))))))).))))..........................................
........................................................................................................105....................................................................................................208........................................
SizePerfect hitTotal NormPerfect NormSRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189782SRR207110(GSM721072)
Nuclear RNA. (cell line)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR189785SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
........................................................................................................................................................................................................................CCTTGCTGTGATGTTCTG................ 182.000.00-------1.00--------1.00--
................................................................................................AAAATCTGCCAGTGAACAG....................................................................................................................................... 191.000.00--------------1.00----
...............................................................................................TAAAATCTGCCAGTGAAATCTG..................................................................................................................................... 221.000.00---------1.00---------
........................................................................................................................................................................................ATTTTATTTTTTTTAGGTG............................................... 191.000.00-------------1.00-----
.................................................................................................AAATCTGCCAGTGAAATCACT.................................................................................................................................... 211.000.00---------1.00---------