ID: uc001dbo.20
GENE: CACHD1(21)
chr1:65142378-65142627+


(1)
B-CELL 		(9)
BRAIN 		(13)
BREAST 		(13)
CELL-LINE 		(8)
CERVIX 		(1)
KIDNEY 		(7)
LIVER 		(2)
OTHER 		(14)
SKIN 		(4)
UTERUS

Sense strand
GTTATTTGTATTACTTCTACTGTATATAAAGATAAGTAAATTGAAGCTCAGAGTTGTTAAGTGATTGATACAAGGTTACACACTAAGTGGCAAAGCCAGGATTCAAACCCAAATCTGTCTGACTGCTGTTAAGGACCAGGAGCATGAGTTTGGAATGTGGGCGGTGGTCGTCTTAACCTCCAGACTTACCTCCTGCACAGAAACCCCAGCTGCGAGGTCCACCAGGAGCCGGTGACATACACAGCTATTG
........................................................................................................................................((((((..((((((((((....(((((.....))))).....)))))))))).)))))).......................................................
.................................................................................................................................130...................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR037940(GSM510478)
293cand5_rep2. (cell line)		SRR037939(GSM510477)
293cand5_rep1. (cell line)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR189787SRR037937(GSM510475)
293cand2. (cell line)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		SRR189786SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		SRR029125(GSM416754)
U2OS. (cell line)		GSM450607(GSM450607)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR037936(GSM510474)
293cand1. (cell line)		TAX577746(Rovira)
total RNA. (breast)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR553575(SRX182781)
source: Kidney. (Kidney)		SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)		SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		GSM450600(GSM450600)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)		SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)		SRR191574(GSM715684)
78genomic small RNA (size selected RNA from t. (breast)		SRR189784SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR037935(GSM510473)
293cand3. (cell line)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)		SRR040010(GSM532895)
G529N. (cervix)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR040037(GSM532922)
G243T. (cervix)		SRR029129(GSM416758)
SW480. (cell line)		SRR191426(GSM715536)
149genomic small RNA (size selected RNA from . (breast)		SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)		SRR191612(GSM715722)
65genomic small RNA (size selected RNA from t. (breast)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR040036(GSM532921)
G243N. (cervix)		SRR189782SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)		SRR040031(GSM532916)
G013T. (cervix)		SRR029128(GSM416757)
H520. (cell line)		SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)		SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577739(Rovira)
total RNA. (breast)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191549(GSM715659)
105genomic small RNA (size selected RNA from . (breast)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR038854(GSM458537)
MM653. (cell line)		SRR040014(GSM532899)
G623N. (cervix)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577742(Rovira)
total RNA. (breast)		SRR191548(GSM715658)
101genomic small RNA (size selected RNA from . (breast)		SRR029126(GSM416755)
143B. (cell line)		SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		TAX577579(Rovira)
total RNA. (breast)		SRR040012(GSM532897)
G648N. (cervix)		SRR029132(GSM416761)
MB-MDA231. (cell line)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577744(Rovira)
total RNA. (breast)		TAX577589(Rovira)
total RNA. (breast)		GSM532879(GSM532879)
G659N. (cervix)		TAX577738(Rovira)
total RNA. (breast)		SRR040024(GSM532909)
G613N. (cervix)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577743(Rovira)
total RNA. (breast)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
......................................................................................................................................ACCAGGAGCATGAGTTTGGAATGT............................................................................................24199.0099.0028.0026.00-1.005.004.00-2.001.002.003.001.002.002.002.00--2.001.00-2.001.00-2.001.00-1.00-----1.00----------------1.00---1.001.00-1.00----1.00-1.00------1.00-1.001.00--
......................................................................................................................................ACCAGGAGCATGAGTTTGGAAT..............................................................................................22123.0023.00--3.001.00-1.00-1.00----------1.001.00-1.002.00-1.00--1.00-----1.00--1.00---1.00----------1.001.00--1.00---1.00----1.00-1.00-1.00-------
......................................................................................................................................ACCAGGAGCATGAGTTTGGAACGT............................................................................................2417.004.00---3.00--4.00---------------------------------------------------------------------
......................................................................................................................................ACCAGGAGCATGAGTTTGGAATG.............................................................................................2316.006.00--2.00----------------------1.00------------1.001.00--------------------1.00---------------
......................................................................................................................................ACCAGGAGCATGAGTTTGGAA...............................................................................................2114.004.00-----------1.00-----------------1.00-------1.00--------------------1.00-----------------
......................................................................................................................................ACCAGGAGCATGAGTTTGGAATA.............................................................................................2313.0023.00--1.00-------------------------------1.00---------------------------------------1.00-
..........................................................................................................................................GGAGCATGAGTTTGGAATGT............................................................................................2013.003.00--------3.00-------------------------------------------------------------------
.......................................................................................................................................CCAGGAGCATGAGTTTGGAATGT............................................................................................2313.003.00---------1.00-------------------------------------1.00-------------------1.00--------
......................................................................................................................................ACCAGGAGCATGAGTTTG..................................................................................................1813.003.00--1.00--------------------------------1.00--------1.00-------------------------------
......................................................................................................................................ACCAGGAGCATGAGTTTGGA................................................................................................2013.003.00---------------2.00-----------------------------------------1.00------------------
......................................................................................................................................ACCAGGAGCATGAGTTTGGAAA..............................................................................................2212.004.00-------------------------1.00-----------------1.00--------------------------------
......................................................................................................................................ACCAGGAGCATGAGTTTGG.................................................................................................1911.001.00-------------------1.00--------------------------------------------------------
......................................................................................................................................ACCAGGAGCATGAGTTTTT.................................................................................................1911.001.00---------------------------------------------------------------------1.00------
......................................................................................................................................ACCAGGAGCATGAGTTTGGAATGC............................................................................................2411.006.001.00---------------------------------------------------------------------------
.......................................................................................................................................CCAGGAGCATGAGTTTGGAAAGT............................................................................................231.000.00---1.00------------------------------------------------------------------------
......................................................................................................................................ACCAGGAGCATGAGTTTGGAATGTGGGCGGT.....................................................................................3111.001.00----------------1.00-----------------------------------------------------------
................................................................................................................................................................................CCTCCAGACTTACCTCCTGCAC....................................................2211.001.00------------------------------------------------1.00---------------------------
......................................................................................................................................ACCAGGAGCATGAGTTTGA.................................................................................................1911.003.00-----------------------------------------------------------------------1.00----
.................................................................................................................................................................................CTCCAGACTTACCTCCTGAAA....................................................211.000.00-----------------------------------------1.00----------------------------------
....................................................................................................................................................................................................................................CCGGTGACATACACATCA....181.000.00-----------------------------------------------------------------1.00----------
......................................................................................................................................ACCAGGAGCATGAGTTTGGACTGT............................................................................................2411.003.001.00---------------------------------------------------------------------------
.................................................................................................................................................................................CTCCAGACTTACCTCCTGCAT....................................................211.000.00--------------------------------------------------------------1.00-------------
...................................................................................................................................AGGACCAGGAGCATGAGTTTGGAATGTGGGC........................................................................................3111.001.00----------------1.00-----------------------------------------------------------
......................................................................................................................................ACCAGGAGCATGAGTTTGGATA..............................................................................................2211.003.00---------------------------------------------1.00------------------------------
......................................................................................................................................ACCAGGAGCATGAGTTT...................................................................................................1711.001.00--1.00-------------------------------------------------------------------------
.......................................................................................................................................................................................ACTTACCTCCTGCACACTG................................................191.000.00----------------------------1.00-----------------------------------------------
......................................................................................................................................ACCAGGAGCATGAGTTTGGAATC.............................................................................................2311.0023.00--------------------------------------------------1.00-------------------------
......................................................................................................................................ACCAGGAGCATGAGTTTGGAATTT............................................................................................2411.0023.00------------------------------1.00---------------------------------------------
.........................................................................................................................................AGGAGCATGAGTTTGGAATGTGA..........................................................................................231.000.00------------------------------------------1.00---------------------------------
................................................CAGAGTTGTTAAGTGATTGATA....................................................................................................................................................................................2211.001.00----------------------------------------------1.00-----------------------------
.......................................................................................................................................CCAGGAGCATGAGTTTGGAATG.............................................................................................2211.001.00-------1.00--------------------------------------------------------------------
.................................................................................................................................................................................CTCCAGACTTACCTCCTGC......................................................1920.500.50---------------------------------------------------------------------------0.50
..............................................................................................................................TGTTAAGGACCAGGA.............................................................................................................1580.120.12-----------0.12----------------------------------------------------------------

Antisense strand
GTTATTTGTATTACTTCTACTGTATATAAAGATAAGTAAATTGAAGCTCAGAGTTGTTAAGTGATTGATACAAGGTTACACACTAAGTGGCAAAGCCAGGATTCAAACCCAAATCTGTCTGACTGCTGTTAAGGACCAGGAGCATGAGTTTGGAATGTGGGCGGTGGTCGTCTTAACCTCCAGACTTACCTCCTGCACAGAAACCCCAGCTGCGAGGTCCACCAGGAGCCGGTGACATACACAGCTATTG
........................................................................................................................................((((((..((((((((((....(((((.....))))).....)))))))))).)))))).......................................................
.................................................................................................................................130...................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR037940(GSM510478)
293cand5_rep2. (cell line)		SRR037939(GSM510477)
293cand5_rep1. (cell line)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR189787SRR037937(GSM510475)
293cand2. (cell line)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		SRR189786SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		SRR029125(GSM416754)
U2OS. (cell line)		GSM450607(GSM450607)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR037936(GSM510474)
293cand1. (cell line)		TAX577746(Rovira)
total RNA. (breast)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR553575(SRX182781)
source: Kidney. (Kidney)		SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)		SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		GSM450600(GSM450600)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)		SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)		SRR191574(GSM715684)
78genomic small RNA (size selected RNA from t. (breast)		SRR189784SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR037935(GSM510473)
293cand3. (cell line)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)		SRR040010(GSM532895)
G529N. (cervix)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR040037(GSM532922)
G243T. (cervix)		SRR029129(GSM416758)
SW480. (cell line)		SRR191426(GSM715536)
149genomic small RNA (size selected RNA from . (breast)		SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)		SRR191612(GSM715722)
65genomic small RNA (size selected RNA from t. (breast)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR040036(GSM532921)
G243N. (cervix)		SRR189782SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)		SRR040031(GSM532916)
G013T. (cervix)		SRR029128(GSM416757)
H520. (cell line)		SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)		SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577739(Rovira)
total RNA. (breast)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191549(GSM715659)
105genomic small RNA (size selected RNA from . (breast)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR038854(GSM458537)
MM653. (cell line)		SRR040014(GSM532899)
G623N. (cervix)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577742(Rovira)
total RNA. (breast)		SRR191548(GSM715658)
101genomic small RNA (size selected RNA from . (breast)		SRR029126(GSM416755)
143B. (cell line)		SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		TAX577579(Rovira)
total RNA. (breast)		SRR040012(GSM532897)
G648N. (cervix)		SRR029132(GSM416761)
MB-MDA231. (cell line)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577744(Rovira)
total RNA. (breast)		TAX577589(Rovira)
total RNA. (breast)		GSM532879(GSM532879)
G659N. (cervix)		TAX577738(Rovira)
total RNA. (breast)		SRR040024(GSM532909)
G613N. (cervix)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577743(Rovira)
total RNA. (breast)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
...................................GTAAATTGAAGCTCAACA..................................................................................................................................................................................................... 181.000.00-------------------------------1.00--------------------------------------------