ID: uc001dbe.1_intron_1_0_chr1_63919646_r
GENE: (2)
chr1:63919596-63920100-


(2)
B-CELL
(1)
BRAIN
(3)
BREAST
(11)
CELL-LINE
(2)
CERVIX
(1)
FIBROBLAST
(1)
HEART
(3)
HELA
(1)
LIVER
(1)
OTHER
(5)
SKIN
(1)
XRN.ip

Sense strand
CTGTGCATCACATTTCTTAAAAAGAGAAATGCAGAAAACCAAAGAACTAAGTAAGAATTTTTGAGTTTTCAATGACAGTAATTTTAAAGATAAACCTATTAATTTGTCTCATTTACATTTGATAGACTTCTTTATATATACCATTACTGGACATGTGATAAAAATACTATTACCTTCTTTAAATAAGAAGCCACATGTCTTTTATCAGGATGTGTTATTTTGGGGATTCTTCTTGAATGTGAATGAAAAGAATGCACCTTGGAAACTGGTAGTAGGCATTTCAAATGTAATGCCCATTTTTATAATATATAATAAGGTATTATATTTTATATTTGGTACTTATAAATATGTATTATTTTGAATTATTTTTTTCTCATGAAGTTGTTTGTTGCAAGTATTGAGAAATTATCCATATTCTATGTTAATTCTTGACATGGGATTTTTACTTCTTTTAGTGACAAAAGTGAATAAACAAAAACTGTTTGAAAAGAGTACAGGACTTCCT
.........................................................................................................................................................................................................................................................(((((((((.........))).....)))))).((((((((((((.....(((((...)))))...))))))))))))..................................................................................................................................................................................
...................................................................................................................................................................................................................................................244...........................................................................................338.....................................................................................................................................................................
SizePerfect hitTotal NormPerfect NormTAX577579(Rovira)
total RNA. (breast)
SRR189782SRR343334SRR029127(GSM416756)
A549. (cell line)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR189784SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
TAX577740(Rovira)
total RNA. (breast)
SRR189785TAX577739(Rovira)
total RNA. (breast)
DRR001483(DRX001037)
"Hela long cytoplasmic cell fraction, control. (hela)
DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)
SRR330910(SRX091748)
tissue: normal skindisease state: normal. (skin)
GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)
SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)
SRR040023(GSM532908)
G575T. (cervix)
SRR037937(GSM510475)
293cand2. (cell line)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR040014(GSM532899)
G623N. (cervix)
SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)
SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)
GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)
GSM416733(GSM416733)
HEK293. (cell line)
SRR037931(GSM510469)
293GFP. (cell line)
SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)
........................................................................................................................................................................................................................................................................................................................TAAGGTATTATATTTTATATTT...........................................................................................................................................................................22112.0012.0012.00----------------------------------
.....CATCACATTTCTTAAAAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1916.006.00-1.005.00--------------------------------
........................................................................................................................................................................................................................................................................................................................TAAGGTATTATATTTTATAGTT...........................................................................................................................................................................225.000.001.002.00--------1.00------------1.00-----------
........................................................................................................................................................................................................................................................................................................................TAAGGTATTATATTTTATAG.............................................................................................................................................................................204.000.00-4.00---------------------------------
........................................................................................................................................................................................................................................................................................................................TAAGGTATTATATTTTATATT............................................................................................................................................................................2114.004.004.00----------------------------------
............................................................................................................................................................................................................................................................................................................................................................................................................................................TTGACATGGGATTTTTACTTCTTTTAG..................................................2714.004.00---4.00-------------------------------
......ATCACATTTCTTAAACTG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................183.000.00------3.00----------------------------
........................................................................................................................................................................................................................................................AGAATGCACCTTGGAAACTGG............................................................................................................................................................................................................................................2113.003.00-----3.00-----------------------------
.............................................................................................................................ACTTCTTTATATATACCATTACTG....................................................................................................................................................................................................................................................................................................................................................................2412.002.00-------1.00-1.00-------------------------
.................................................................................................................................................................................................................................................................................................................................................................................................TTGTTGCAAGTATTGAGAAATTATCCATATTCTATGTTAATTCTTGACATGGGATTTTTACTTCTTTTAG..................................................7012.002.00-----------2.00-----------------------
........................................................................................................................................................................................................................................................................................................................TAAGGTATTATATTTTAG...............................................................................................................................................................................182.000.00-2.00---------------------------------
....................................................................................................................ATTTGATAGACTTCTTCCC..................................................................................................................................................................................................................................................................................................................................................................................192.000.00-------------------------1.00-1.00-------
........................................................................................................................................................................................................................................................................................................................TAAGGTATTATATTTTTTAC.............................................................................................................................................................................202.000.00-2.00---------------------------------
........................................................................................................................................................................................................................................................................................................................TAAGGTATTATATTTTATTGT............................................................................................................................................................................211.000.00----------1.00------------------------
...................................................................................................................................................................................................................................................................................................................................................................TTTTGAATTATTTTTTTATAT.................................................................................................................................211.000.00-------1.00---------------------------
.................................................................................................................................................................................................................................................................................................................................................ACTTATAAATATGTATCATT....................................................................................................................................................201.000.00----1.00------------------------------
........................................................................................................................................................................................................................................................................................................................TAAGGTATTATATTTTATATTTA..........................................................................................................................................................................2311.0012.001.00----------------------------------
........................................................................................................................................................................................................................................................................................................................TAAGGTATTATATTTTATAATT...........................................................................................................................................................................221.000.00------------1.00----------------------
........................................................................................................................................................................................................................................................................................................................TAAGGTATTATATTTTTGTC.............................................................................................................................................................................201.000.00-1.00---------------------------------
..........................AAATGCAGAAAACCAAAGAACTAATG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................261.000.00---------------------1.00-------------
...........................................................TTTGAGTTTTCAATGGGGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................191.000.00----1.00------------------------------
............................................................................................................................................................................................................................................................................................................................................................................................................................................TTGACATGGGATTTTTACTTCTTTTCG..................................................271.000.00---1.00-------------------------------
........................................................................................................................................................................................................................................................................................................................TAAGGTATTATATTTTAGAG.............................................................................................................................................................................201.000.00-1.00---------------------------------
.......................GAGAAATGCAGAAAACCAAAGAACTAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001.00-----------------------------1.00-----
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGAGTACAGGACTTCC.1811.001.00--------------------1.00--------------
.........................................................................................................................................................................................................................................................................................................................................................................ATTATTTTTTTCTCAGCCG.............................................................................................................................191.000.00----1.00------------------------------
...................................................................................................................................................................................................................................................................................................................................................................................................................AATTATCCATATTCTATTTT..................................................................................201.000.00--------------------------1.00--------
........................................................................................................................................................................................................................................................................................................................TAAGGTATTATATTTTATATTTT..........................................................................................................................................................................2311.0012.001.00----------------------------------
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGAAAAGAGTACAGAAAA....191.000.00-------------------1.00---------------
..............................GCAGAAAACCAAAGAACTAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001.00-----1.00-----------------------------
...................................................................................................................................................................................................................................................................TGGAAACTGGTAGTAGGCATTTC...............................................................................................................................................................................................................................2311.001.00----------------------------1.00------
..........................................................................................................................................................................................................................................................AATGCACCTTGGAAAGGA.............................................................................................................................................................................................................................................181.000.00-----------------1.00-----------------
..........................................................................................................................................................................................................................................................................................................................AGGTATTATATTTTATAGAT...........................................................................................................................................................................201.000.00---------------1.00-------------------
............................ATGCAGAAAACCAAAGAA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................1830.670.67--------------------------------0.330.33-
..........................................................................................................................................................................................................................................................................................................................AGGTATTATATTTTATATTT...........................................................................................................................................................................2030.670.67------------------------------0.67----
........................................................................................................................................................................................................................................................................................................................TAAGGTATTATATTTTATAT.............................................................................................................................................................................2020.500.50-------------------------------0.50---
...........................................................................................................................................................................................................................................................................................................................GGTATTATATTTTATATT............................................................................................................................................................................1840.250.25------------------------------0.25----

Antisense strand
CTGTGCATCACATTTCTTAAAAAGAGAAATGCAGAAAACCAAAGAACTAAGTAAGAATTTTTGAGTTTTCAATGACAGTAATTTTAAAGATAAACCTATTAATTTGTCTCATTTACATTTGATAGACTTCTTTATATATACCATTACTGGACATGTGATAAAAATACTATTACCTTCTTTAAATAAGAAGCCACATGTCTTTTATCAGGATGTGTTATTTTGGGGATTCTTCTTGAATGTGAATGAAAAGAATGCACCTTGGAAACTGGTAGTAGGCATTTCAAATGTAATGCCCATTTTTATAATATATAATAAGGTATTATATTTTATATTTGGTACTTATAAATATGTATTATTTTGAATTATTTTTTTCTCATGAAGTTGTTTGTTGCAAGTATTGAGAAATTATCCATATTCTATGTTAATTCTTGACATGGGATTTTTACTTCTTTTAGTGACAAAAGTGAATAAACAAAAACTGTTTGAAAAGAGTACAGGACTTCCT
.........................................................................................................................................................................................................................................................(((((((((.........))).....)))))).((((((((((((.....(((((...)))))...))))))))))))..................................................................................................................................................................................
...................................................................................................................................................................................................................................................244...........................................................................................338.....................................................................................................................................................................
SizePerfect hitTotal NormPerfect NormTAX577579(Rovira)
total RNA. (breast)
SRR189782SRR343334SRR029127(GSM416756)
A549. (cell line)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR189784SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
TAX577740(Rovira)
total RNA. (breast)
SRR189785TAX577739(Rovira)
total RNA. (breast)
DRR001483(DRX001037)
"Hela long cytoplasmic cell fraction, control. (hela)
DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)
SRR330910(SRX091748)
tissue: normal skindisease state: normal. (skin)
GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)
SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)
SRR040023(GSM532908)
G575T. (cervix)
SRR037937(GSM510475)
293cand2. (cell line)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR040014(GSM532899)
G623N. (cervix)
SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)
SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)
GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)
GSM416733(GSM416733)
HEK293. (cell line)
SRR037931(GSM510469)
293GFP. (cell line)
SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)
..........................................................................................................................................................................................................................................................................TGGTAGTAGGCATTTCACTAG.......................................................................................................................................................................................................................... 212.000.00--------2.00--------------------------
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAAAAGTGAATAAACAAAAATTTT....................... 251.000.00----1.00------------------------------
..........................................................................................................................................................................................................................................................................................AAATGTAATGCCCATAT.............................................................................................................................................................................................................. 171.000.00---------1.00-------------------------
...............................TACTTAGTTCTTTGGTTTTCTG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 2211.001.00--------------1.00--------------------
...................................................................................................................................................................................................................................................................................................................................................................................ATACTTGCAACAAACAACTTCATGAGA........................................................................................................... 2711.001.00-------------1.00---------------------
..................................................................................................................................................................................................................................................ATGAAAAGAATGCACAAAA.................................................................................................................................................................................................................................................... 191.000.00----------------------1.00------------
........................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTACTTCTTTTAGGGAC.............................................. 191.000.00------------------------1.00----------
..................AAAAAGAGAAATGCAGAAAAT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. 211.000.00----1.00------------------------------
.........................................................................................................................ATAGACTTCTTTATAGGTA............................................................................................................................................................................................................................................................................................................................................................................. 191.000.00----------------1.00------------------
.................................................................................................................................................................AAATACTATTACCTTCTTA..................................................................................................................................................................................................................................................................................................................................... 191.000.00------------------1.00----------------
..........................................................................................................................................................................................................................................................GTTTCCAAGGTGCATT............................................................................................................................................................................................................................................... 1650.200.20----------------------------------0.20