ID: uc001dav.2_intron_1_0_chr1_63625934_r.5p
GENE: (3)
chr1:63626875-63627124-


(1)
B-CELL
(1)
BRAIN
(1)
BREAST
(13)
CELL-LINE
(1)
CERVIX
(1)
HEART
(3)
OTHER
(20)
SKIN
(1)
UTERUS
(1)
XRN.ip

Sense strand
AGCTCTATGAAGGGCGTGAAACAGGAAAGGCTACATAGAGGAGATGGCAGGTGAGGAATAAGGAGTTACTATTCTACTGGGGCATCATTTCAGTGTATGCGTGGGCATACCTGTGGCATTATTGCCCAGCCCCAATCTGTCTCCCCACAACCTGTGGGAACTTTGAAGGCTAACCAGTGTGTTTTATTTTGATGTTTGGTAGGCTGCTTTGATGATGTAGTTTATGACAGAAATGTAAGCAACAGTTTCT
................................................................((((...(((...((((((.......(((.((((((....))))))))).((((....))))..)))))).........(((((.....)))))......)))...))))............................................................................
..............................................................63................................................................................................................177.......................................................................
SizePerfect hitTotal NormPerfect NormSRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)
SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)
SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)
SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)
SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)
SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)
SRR189784SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)
SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)
SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)
SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)
SRR191554(GSM715664)
99genomic small RNA (size selected RNA from t. (breast)
SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR037943(GSM510481)
293DcrTN. (cell line)
GSM532874(GSM532874)
G699T. (cervix)
SRR037937(GSM510475)
293cand2. (cell line)
SRR444048(SRX128896)
Sample 8cDNABarcode: AF-PP-333: ACG CTC TTC C. (skin)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)
SRR037941(GSM510479)
293DroshaTN. (cell line)
SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)
SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)
SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
SRR343334SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)
GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR015360(GSM380325)
Plasma B cells (PC137). (B cell)
SRR343337
...........................................................................................................................................................GGGAACTTTGAAGGCCGA.............................................................................1819.000.008.00-2.001.00--1.00-1.00--1.00---1.00--1.00------------1.001.001.00--------
...........................................................................................................................................................GGGAACTTTGAAGGCCGAA............................................................................1911.000.003.00-1.001.00----1.00---1.00-1.00----1.001.00---------1.00-----------
...........................................................................................................................................................GGGAACTTTGAAGGCCG..............................................................................179.000.00-4.00----1.00---1.00---------------1.00-1.00------1.00------
..........................................................................................................................................................TGGGAACTTTGAAGGCCGAA............................................................................2022.000.50-----1.50---------------------------------0.50--
..........................................................................................................................................................TGGGAACTTTGAAGGCCGA.............................................................................1922.000.500.50------------------------------------0.500.50-0.50-
...........................................................................................................................................................GGGAACTTTGAAGGCCATC............................................................................192.000.00---------2.00--------------------------------
..................................................................................................................................................................................................................GATGATGTAGTTTATGTGA.....................192.000.00----2.00-------------------------------------
...........................................................................................................................................................GGGAACTTTGAAGGCCGCA............................................................................192.000.00----------------------1.00-------------1.00-----
....................................................................................................................................................................................................TGGTAGGCTGCTTTGCTCC...................................191.000.00-------------------------1.00----------------
...................................................................ACTATTCTACTGGGGCTAAA...................................................................................................................................................................201.000.00-------------1.00----------------------------
............................................................................................................................................................GGAACTTTGAAGGCTGAAG...........................................................................191.000.00---------------------------1.00--------------
..........................................................................................................................................................TGGGAACTTTGAAGGGAAG.............................................................................191.000.00----------------1.00-------------------------
...........................................................................................................................................................GGGAACTTTGAAGGCCGG.............................................................................181.000.00---1.00--------------------------------------
.............................................................................................................CCTGTGGCATTATTGGAG...........................................................................................................................181.000.00----1.00-------------------------------------
.............................................................................................................................................................GAACTTTGAAGGCTAAATG..........................................................................191.000.00------------------------1.00-----------------
...........................................................................................................................................................GGGAACTTTGAAGGCCGT.............................................................................181.000.00-----------------1.00------------------------
...........................................................................................................................................................GGGAACTTTGAAGGCTGAAG...........................................................................201.000.00-----1.00------------------------------------
..........................................................................................................................................................TGGGAACTTTGAAGGC................................................................................1620.500.50-----------------------------------------0.50

Antisense strand
AGCTCTATGAAGGGCGTGAAACAGGAAAGGCTACATAGAGGAGATGGCAGGTGAGGAATAAGGAGTTACTATTCTACTGGGGCATCATTTCAGTGTATGCGTGGGCATACCTGTGGCATTATTGCCCAGCCCCAATCTGTCTCCCCACAACCTGTGGGAACTTTGAAGGCTAACCAGTGTGTTTTATTTTGATGTTTGGTAGGCTGCTTTGATGATGTAGTTTATGACAGAAATGTAAGCAACAGTTTCT
................................................................((((...(((...((((((.......(((.((((((....))))))))).((((....))))..)))))).........(((((.....)))))......)))...))))............................................................................
..............................................................63................................................................................................................177.......................................................................
SizePerfect hitTotal NormPerfect NormSRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)
SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)
SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)
SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)
SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)
SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)
SRR189784SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)
SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)
SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)
SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)
SRR191554(GSM715664)
99genomic small RNA (size selected RNA from t. (breast)
SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR037943(GSM510481)
293DcrTN. (cell line)
GSM532874(GSM532874)
G699T. (cervix)
SRR037937(GSM510475)
293cand2. (cell line)
SRR444048(SRX128896)
Sample 8cDNABarcode: AF-PP-333: ACG CTC TTC C. (skin)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)
SRR037941(GSM510479)
293DroshaTN. (cell line)
SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)
SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)
SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
SRR343334SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)
GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR015360(GSM380325)
Plasma B cells (PC137). (B cell)
SRR343337
....................................................................................................................................CAATCTGTCTCCCCACTAG................................................................................................... 191.000.00---------------------1.00--------------------
.............................................................................................................................................................................................................................TTATGACAGAAATGTACC........... 181.000.00-------1.00----------------------------------
..............................................................GAGTTACTATTCTACTG........................................................................................................................................................................... 171.000.00----------------------------------1.00-------
............................................................................................................................................................................................................TGCTTTGATGATGTAATA............................ 181.000.00-----------------------------1.00------------
.........................................................CCAGTAGAATAGTAACTCCTTAT.......................................................................................................................................................................... 2311.001.00----------1.00-------------------------------
...................................................................ACTATTCTACTGGGGCGA..................................................................................................................................................................... 181.000.00-----------------------1.00------------------
.............................................................................................................................................................................................................................TTATGACAGAAATGTACT........... 181.000.00-------1.00----------------------------------