ID: uc001cyg.3_intron_52_0_chr1_55619954_r
GENE: (12)
chr1:55619904-55620393-


(1)
AGO2.ip 		(5)
B-CELL 		(8)
BREAST 		(20)
CELL-LINE 		(5)
CERVIX 		(6)
HEART 		(3)
HELA 		(4)
LIVER 		(2)
OTHER 		(1)
RRP40.ip 		(22)
SKIN 		(1)
TESTES 		(2)
XRN.ip

Sense strand
TGAAATTTAATTCAGATCAGCTTAATCATTTGTTTGTTCTCATTCAGAAGGTACGTGTTCAGTCAGACTTGCTTACTTTTAAATTTTCTTAAAATAAGCTCTTTTGAGGTCCTGAATACCCCTCCTCCCCACCAGTTAGCAGTATTTAAATGTACTTTTCTTACGTTGTTAATGTTTTTAGCTCAAGTTTAAAATTTTTGCATATTTTGCCAGTTTGATCGTGAAGCAATTCCTGTGTCTTTTCCGTTCTACAGAGCTGGGAGACTGAGAGTGATAGAGTAAGACAGAAGCTTTTGAGCCTGATTGGACGAATAGGCCGGGAAGCTCGCTTTGAGACCACTTCTGGAAAGGCAGGAGAATCAAATGGATTTTTCTAGCTACAAATGCTCAAAGCAGCTATTTGCATATTGGCTGGCTGATCATATGTAATATTATTGTAGGTTTTAGACGTACTCTGGGAACTGGCTCACCTTCCAACCCTGCCCAGTAG
...............................................................................................................................................................................................................................................((((((((((....)))).))))))((..(((((.......(((...((.((((((..(((((.((....)).)))))..)))))))).)))......)))))..))...((((((((((((.....))))))))).)))...............................................................................................................
........................................................................................................................................................................................................................................233.....................................................................................................................................................385.......................................................................................................
SizePerfect hitTotal NormPerfect NormSRR189782SRR191607(GSM715717)
192genomic small RNA (size selected RNA from . (breast)		SRR040009(GSM532894)
G727T. (cervix)		SRR189784SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR015448(SRR015448)
cytoplasmic small RNAs. (breast)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR189787SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)		TAX577741(Rovira)
total RNA. (breast)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR553576(SRX182782)
source: Testis. (testes)		SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577744(Rovira)
total RNA. (breast)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR343334SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		SRR033719(GSM497064)
6hr Activated B cell line (ABC158). (B cell)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		SRR040041(GSM532926)
G612T. (cervix)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)		SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)		SRR191575(GSM715685)
85genomic small RNA (size selected RNA from t. (breast)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR040028(GSM532913)
G026N. (cervix)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)		SRR040008(GSM532893)
G727N. (cervix)		SRR033726(GSM497071)
Mututated CLL (CLLM633). (B cell)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577590(Rovira)
total RNA. (breast)		SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033720(GSM497065)
EBV activated B cell line (EBV159). (B cell)		DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		TAX577579(Rovira)
total RNA. (breast)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR033714(GSM497059)
Burkitt Lymphoma (BL134). (B cell)		SRR038853(GSM458536)
MELB. (cell line)		SRR444043(SRX128891)
Sample 4cDNABarcode: AF-PP-339: ACG CTC TTC C. (skin)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR040035(GSM532920)
G001T. (cervix)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)		SRR553574(SRX182780)
source: Heart. (Heart)		SRR207119(GSM721081)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		DRR001487(DRX001041)
"Hela long nuclear cell fraction, LNA(+)". (hela)		SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)		SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
.............................................................................................................................................................................................................................................TCTTTTCCGTTCTACGGTT..........................................................................................................................................................................................................................................1916.000.0012.00--3.00--------------------1.00-------------------------------------------------------
.............................................................................................................................................................................................................................................TCTTTTCCGTTCTACGGCT..........................................................................................................................................................................................................................................1912.000.008.00--4.00----------------------------------------------------------------------------
.............................................................................................................................................................................................................................................TCTTTTCCGTTCTACTGTT..........................................................................................................................................................................................................................................1910.000.008.00--2.00----------------------------------------------------------------------------
.............................................................................................................................................................................................................................................TCTTTTCCGTTCTACGGTC..........................................................................................................................................................................................................................................199.000.009.00-------------------------------------------------------------------------------
.............................................................................................................................................................................................................................................TCTTTTCCGTTCTACGGAT..........................................................................................................................................................................................................................................195.000.005.00-------------------------------------------------------------------------------
....................................................................................................................................................................................................................................................................................................TTTGAGCCTGATTGGACGAATAGGCCGGGAAGC.....................................................................................................................................................................3315.005.00---------2.00-------1.00----1.00--1.00------------------------------------------------------
...........................................................................................................................................................................................................................................................................................................................................................................ATGGATTTTTCTAGCAGG.............................................................................................................184.000.00--4.00-----------------------------------------------------------------------------
.....................................................................................................................ACCCCTCCTCCCCACGCCC..................................................................................................................................................................................................................................................................................................................................................................193.000.00---------------------------------------------1.00-----1.00---------------1.00------------
.............................................................................................................................................................................................................................................TCTTTTCCGTTCTACCGTC..........................................................................................................................................................................................................................................193.000.003.00-------------------------------------------------------------------------------
.............................................................................................................................................................................................................................................TCTTTTCCGTTCTACTGCT..........................................................................................................................................................................................................................................193.000.003.00-------------------------------------------------------------------------------
.............................................................................................................................................................................................................................................TCTTTTCCGTTCTACTGTC..........................................................................................................................................................................................................................................193.000.002.00--1.00----------------------------------------------------------------------------
.....................................................................................................................................................................................................................................................................................................TTGAGCCTGATTGGACGAATAGG..............................................................................................................................................................................2313.003.00-------3.00------------------------------------------------------------------------
............................................................................................................................................................................................................................................................AGAGCTGGGAGACTGAGA............................................................................................................................................................................................................................1822.002.00--------------2.00-----------------------------------------------------------------
............................................................................................................................................................................................................................................................................................................................................................................................................................TGGCTGATCATATGTAATATTATTGTAG..................................................2812.002.00------------2.00-------------------------------------------------------------------
................................................................................................................................................................................................................................................................................................................................................................................TTTTTCTAGCTACAATATA.......................................................................................................192.000.00----2.00---------------------------------------------------------------------------
...........................................................................................................................................................................................................................................................................................................................................................................ATGGATTTTTCTAGCCTGT............................................................................................................192.000.00--2.00-----------------------------------------------------------------------------
................................................................................................................................................................................................................................................................................................................TGGACGAATAGGCCGGGAAGC.....................................................................................................................................................................2112.002.00-----------------------------1.00------1.00-------------------------------------------
......................................................................................................................................................................................................................................................................................................................................................................ATCAAATGGATTTTTGGAG.................................................................................................................192.000.00-----------------------------------------1.00------------------------------1.00-------
...........................................................................................................................................................................................................................................................................................................................................................................ATGGATTTTTCTAGCAGCG............................................................................................................192.000.00--2.00-----------------------------------------------------------------------------
..............................................................................................................................................................................................................................................................................................................................................................................................................................GCTGATCATATGTAATATTATTGTAGG.................................................2712.002.00-----------------------2.00--------------------------------------------------------
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................AGACGTACTCTGGGAACTGGCTCAC....................2512.002.00------------1.00---------------------------------------------------1.00---------------
........................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTAGACGTACTCTGGGAACTGGC........................2612.002.00-----------------------------------1.00----------------------1.00---------------------
.....................................................................................................................................................................................................................................................................AGACTGAGAGTGATAGAGTAT................................................................................................................................................................................................................212.000.00--------2.00-----------------------------------------------------------------------
......................................................................................................................................................................................................................................................................................................................................................................ATCAAATGGATTTTTGGA..................................................................................................................182.000.00-------------1.00------------------------------------------1.00-----------------------
..................................................................................................................................................TAAATGTACTTTTCTTATTAA...................................................................................................................................................................................................................................................................................................................................212.000.00-----2.00--------------------------------------------------------------------------
...........................................................................................................................................................................................................................................................................................................................................................................ATGGATTTTTCTAGCAGGG............................................................................................................192.000.00--2.00-----------------------------------------------------------------------------
.............................................................................................................................................................................................................................................TCTTTTCCGTTCTACGATT..........................................................................................................................................................................................................................................192.000.002.00-------------------------------------------------------------------------------
...................................................................................................................................................................................................................................................................................................................................................................................................................................TCATATGTAATATTATTGTAG..................................................2112.002.00--------------------------2.00-----------------------------------------------------
.......................................................................................................................................................................................................................................................................................................GAGCCTGATTGGACGAATAGGCCGGG.........................................................................................................................................................................2611.001.00--------------------------------------------------------------------1.00-----------
..................................................................................................................................................................................................................................................................GGGAGACTGAGAGTGATAGAGTAAGACA............................................................................................................................................................................................................2811.001.00------------------------------------------1.00-------------------------------------
............................................................................................................................................................................................................................................................AGAGCTGGGAGACTGAGTTGA.........................................................................................................................................................................................................................211.000.00----------------------1.00---------------------------------------------------------
.............................................................................................................................................................................................................................................TCTTTTCCGTTCTACCCTT..........................................................................................................................................................................................................................................191.000.001.00-------------------------------------------------------------------------------
........................................................................................................................................TAGCAGTATTTAAATGTTG...............................................................................................................................................................................................................................................................................................................................................191.000.001.00-------------------------------------------------------------------------------
..................................................................................................................................................TAAATGTACTTTTCTTATTAT...................................................................................................................................................................................................................................................................................................................................211.000.00-----1.00--------------------------------------------------------------------------
...........................................................................................................................................................................................................................................................................................................................................................................ATGGATTTTTCTAGCTGCG............................................................................................................191.000.00--1.00-----------------------------------------------------------------------------
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACCCTGCCCAGTACT171.000.00-------------------------------------------------------1.00------------------------
........................................................................................................................................................................................................................................................................................................AGCCTGATTGGACGA...................................................................................................................................................................................1511.001.00---------------------------------------------------------------1.00----------------
........................................................................................................................................TAGCAGTATTTAAATATTG...............................................................................................................................................................................................................................................................................................................................................191.000.001.00-------------------------------------------------------------------------------
..........................................................................................................................................................................................................................................................................................................................................................................AATGGATTTTTCTAGCTTGT............................................................................................................201.000.00----------------------------------------------------------------------1.00---------
.............................................................................................................................................................................................................................................TCTTTTCCGTTCTACGATC..........................................................................................................................................................................................................................................191.000.00------------------------1.00-------------------------------------------------------
............................................................................................................................................................................................................................................................................................................TGATTGGACGAATAGGC.............................................................................................................................................................................1711.001.00-----------------------------------------------------------------------1.00--------
...........................................................................................................................................................................................................................................................................................................................................................................ATGGATTTTTCTAGCAGGT............................................................................................................191.000.00--1.00-----------------------------------------------------------------------------
....................................................................................................................................................................................................................................................................GAGACTGAGAGTGATAGAGTAAGACAG...........................................................................................................................................................................................................2711.001.00---------------1.00----------------------------------------------------------------
...............................................................................................................................................................................................................................................................................................AAGCTTTTGAGCCTGATTGGACGAATAGGC.............................................................................................................................................................................3011.001.00----------------------------------1.00---------------------------------------------
...............................................................................................................................................................................................................................................................................................AAGCTTTTGAGCCTGATCTAA......................................................................................................................................................................................211.000.00----------1.00---------------------------------------------------------------------
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACTCTGGGAACTGGCTCA.....................1911.001.00-------------------------------------------------------------------------1.00------
....................................................................................................................................................................................................................................................................................................................CGAATAGGCCGGGAAGCTCGCTT...............................................................................................................................................................2311.001.00------------------1.00-------------------------------------------------------------
........................................................................................................................................................................................................................................................................................................................TAGGCCGGGAAGCTCGCTTTGAGACC........................................................................................................................................................2611.001.00-------------------------------------------------------------1.00------------------
.......................................................................................................................................................................................................................................................................................................................................................................................................................TTGGCTGGCTGATCATATGTAATA...........................................................2411.001.00----------------------------------------------------1.00---------------------------
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGTACTCTGGGAACTGG.........................1811.001.00-----------1.00--------------------------------------------------------------------
...........................................................................................................................................................................................................................................................................................................................................................................ATGGATTTTTCTAGCAGGA............................................................................................................191.000.00-------------------1.00------------------------------------------------------------
...........................................................................................................................................................................................................................................................................................................................................................................ATGGATTTTTCTAGCTGGCG...........................................................................................................201.000.00--1.00-----------------------------------------------------------------------------
....................................................................................................................................................................................................................................................................GAGACTGAGAGTGATAGAGTAAGACAGAAGCTT.....................................................................................................................................................................................................3311.001.00---------------1.00----------------------------------------------------------------
.....................................................................................................................................................................................................................................................................AGACTGAGAGTGATAGAGTAAGACA............................................................................................................................................................................................................2511.001.00--------------------------------------1.00-----------------------------------------
...........................................................................................................................................................................................................................................................................................................................................................................ATGGATTTTTCTAGCCGGT............................................................................................................191.000.00-----------------------------------------------------1.00--------------------------
................................................................................................................................................................................................................................................................CTGGGAGACTGAGAGTGATAGAGTAAGACAG...........................................................................................................................................................................................................3111.001.00---------------------1.00----------------------------------------------------------
................................................................................................................................................................................................................................................................................................AGCTTTTGAGCCTGATTGGA......................................................................................................................................................................................2011.001.00-----------1.00--------------------------------------------------------------------
................................................................................................................................................................................................................................................................CTGGGAGACTGAGAGTGATAGAGTAAGACAGAAGC.......................................................................................................................................................................................................3511.001.00-------------------1.00------------------------------------------------------------
.........................................................................................................................................................................................................................................................................................................................................................................AAATGGATTTTTCTAGCATGG............................................................................................................211.000.00-----------------------------------------------------------------1.00--------------
...........................................................................................................................................................................................................................................................................................................................................................................ATGGATTTTTCTAGCTGGGA...........................................................................................................201.000.00--1.00-----------------------------------------------------------------------------
...........................................................................................................................................................................................................................................................................................................................................................................ATGGATTTTTCTAGCAGA.............................................................................................................181.000.00--------------------------------------------------------------1.00-----------------
.............................................................................................................................................................................................................................................TCTTTTCCGTTCTACCAAT..........................................................................................................................................................................................................................................191.000.001.00-------------------------------------------------------------------------------
.............................................................................................................................................................................................................................................TCTTTTCCGTTCTACCGTT..........................................................................................................................................................................................................................................191.000.001.00-------------------------------------------------------------------------------
...........................................................................................................................................................................................................................................................................................................................................................................ATGGATTTTTCTAGCGCTG............................................................................................................191.000.00--1.00-----------------------------------------------------------------------------
.............................................................................................................................................................................................................................................TCTTTTCCGTTCTACAGCT..........................................................................................................................................................................................................................................191.000.001.00-------------------------------------------------------------------------------
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGGAACTGGCTCACATTG................191.000.00---1.00----------------------------------------------------------------------------
...........................................................................................................................................................................................................................................................................................................................................................................ATGGATTTTTCTAGCATTC............................................................................................................191.000.00--1.00-----------------------------------------------------------------------------
...............................................................................................................................................................................................................................................................................................................TTGGACGAATAGGCCGGGAAGCTC...................................................................................................................................................................2411.001.00-----------------------------------------------1.00--------------------------------
...........................................................................................................................................................................................................................................................................................................................................................................ATGGATTTTTCTAGCATCG............................................................................................................191.000.00----------------------------------------1.00---------------------------------------
......................................................................................................................................................................................................................................................................................GTAAGACAGAAGCTTTTGAGCCTGA...........................................................................................................................................................................................2511.001.00----------------1.00---------------------------------------------------------------
........................................................................................TTAAAATAAGCTCTTGAAG...............................................................................................................................................................................................................................................................................................................................................................................................191.000.00-------------------------------1.00------------------------------------------------
................................................................................................................................................................................................................................................................................................................TGGACGAATAGGCCGGGAAGCTCGCTTTGA............................................................................................................................................................3011.001.00----1.00---------------------------------------------------------------------------
.........................................................................................................................................................................................................................................................................................................................................................................AAATGGATTTTTCTAGCAGGG............................................................................................................211.000.00-------------------------------------------1.00------------------------------------
..................................................GTACGTGTTCAGTCAGACTTGCTT................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001.00------------------------------------------------------------1.00-------------------
.............................................................................................................................................................................................................................................TCTTTTCCGTTCTACGATA..........................................................................................................................................................................................................................................191.000.001.00-------------------------------------------------------------------------------
............................................................................................................................................................................................................................................................AGAGCTGGGAGACTGAGAG...........................................................................................................................................................................................................................1911.001.00------------------------------------------------1.00-------------------------------
..........................................................................................................................................................................................................................................................ACAGAGCTGGGAGACTGAGAGTGACAG.....................................................................................................................................................................................................................271.000.00---------------------1.00----------------------------------------------------------
..................................................................................................................................................................................................................................................................GGGAGACTGAGAGTGGGGC.....................................................................................................................................................................................................................191.000.00---------------------------------------1.00----------------------------------------
.............................................................................................................................................................................................................................................TCTTTTCCGTTCTACCGGC..........................................................................................................................................................................................................................................191.000.001.00-------------------------------------------------------------------------------
................................................................................................................................................................................................................................................................................................................................................................................TTTTTCTAGCTACAAATGCTCAAAGCAGCTATTTGCATATTGGCTGGCTGATCATATGTAATATTATTGTAG..................................................7211.001.00----------------------------------------------------------------------------1.00---
...............................................................................................................................................................................................................................................................................................................................................ACCACTTCTGGAAAG............................................................................................................................................1501.001.00-----------------------------------------------------------1.00--------------------
............................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGACGTACTCTGGGAACTGGCT.......................2311.001.00-------------1.00------------------------------------------------------------------
...........................................................................................................................................................................................................................................................................................................................................................................ATGGATTTTTCTAGCTGTGT...........................................................................................................201.000.00--1.00-----------------------------------------------------------------------------
........................................CATTCAGAAGGTACGTGTTCAGTCA.........................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001.00-----------------1.00--------------------------------------------------------------
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTCTGGGAACTGGCTCA.....................2011.001.00-------1.00------------------------------------------------------------------------
.....................................................................................................................................................................................................................................................................AGACTGAGAGTGATAGAGTAAGA..............................................................................................................................................................................................................2311.001.00--------------------------------------------------------------------------1.00-----
......................................................................................................................................................................................................................................................................................................................AATAGGCCGGGAAGCTCGCTTTGAGACC........................................................................................................................................................2811.001.00--------------------------------------------1.00-----------------------------------
.............................................................................................................................................................................................................................................TCTTTTCCGTTCTACGGGT..........................................................................................................................................................................................................................................191.000.001.00-------------------------------------------------------------------------------
.............................................................................................................................................................................................................................................TCTTTTCCGTTCTACTAAT..........................................................................................................................................................................................................................................191.000.001.00-------------------------------------------------------------------------------
.................................................................................................................................................................................................................................................................................................................................................................................................................................GATCATATGTAATATTATTGTAG..................................................2311.001.00-----------1.00--------------------------------------------------------------------
..........................................................................................................................................................................................................................................................................................................CCTGATTGGACGAATAGGCCGGGA........................................................................................................................................................................2411.001.00------------------------------1.00-------------------------------------------------
...........................................................................................................................................................................................................................................................................................................................................................................ATGGATTTTTCTAGCATGT............................................................................................................191.000.00--1.00-----------------------------------------------------------------------------
.............................................................................................................................................................................................................................................TCTTTTCCGTTCTACGACC..........................................................................................................................................................................................................................................191.000.00---1.00----------------------------------------------------------------------------
.................................................................................................................................................................................................................................................................TGGGAGACTGAGAGTGATAGAGTAAGACAGAAGC.......................................................................................................................................................................................................3411.001.00--------------------1.00-----------------------------------------------------------
............................................................................................................................................................................................................................................................................................................TGATTGGACGAATAGGCCGGGAAG......................................................................................................................................................................2411.001.00------------------------------------------------------1.00-------------------------
................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTGTAGGTTTTAGACGTA......................................2011.001.00----------------------------1.00---------------------------------------------------
................................................................................................................................................................................................AATTTTTGCATATTTTGCCAGTTTGATC..............................................................................................................................................................................................................................................................................2811.001.00---------------------------1.00----------------------------------------------------
.............................................................................................................................................................................................................................................TCTTTTCCGTTCTACAGTT..........................................................................................................................................................................................................................................191.000.001.00-------------------------------------------------------------------------------
...................................................................................................................................................................................................................................................................................................TTTTGAGCCTGATTGGACG....................................................................................................................................................................................1911.001.00---------------------------------------------------------1.00----------------------
.............................................................................................................................................................................................................................................TCTTTTCCGTTCTACTATC..........................................................................................................................................................................................................................................191.000.00---1.00----------------------------------------------------------------------------
........................................................................................................................................TAGCAGTATTTAAATATG................................................................................................................................................................................................................................................................................................................................................181.000.001.00-------------------------------------------------------------------------------
.............................................................................................................................................................................................................................................TCTTTTCCGTTCTACCGCC..........................................................................................................................................................................................................................................191.000.001.00-------------------------------------------------------------------------------
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTTTAGACGTACTCTGGGAACTGGCT.......................2811.001.00----1.00---------------------------------------------------------------------------
...........................................................................................................................................................................................................................................................................................................................GCCGGGAAGCTCGCTTTGAGAC.........................................................................................................................................................2211.001.00-------------------------1.00------------------------------------------------------
.............................................................................................................................................................................................................................................TCTTTTCCGTTCTACTGCC..........................................................................................................................................................................................................................................191.000.00---1.00----------------------------------------------------------------------------
........................................................................................................................................................................................................................................................................................AAGACAGAAGCTTTTGAGCC..............................................................................................................................................................................................2011.001.00-------------------------------------1.00------------------------------------------
.............................................................................................................................................................................................................................................TCTTTTCCGTTCTACGGTA..........................................................................................................................................................................................................................................191.000.001.00-------------------------------------------------------------------------------
..........................................................................................................AGGTCCTGAATACCCCTCCTCCCC........................................................................................................................................................................................................................................................................................................................................................................2411.001.00---------1.00----------------------------------------------------------------------
...................................................................................................................................................................................................................................................................................................................................................................................................................CATATTGGCTGGCTGATG.....................................................................181.000.00--------------------------------1.00-----------------------------------------------
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGTACTCTGGGAACTGGCAA......................211.000.00--------------------------------------------------1.00-----------------------------
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTCTGGGAACTGGCTCACCTTCCA..............2511.001.00--------------------1.00-----------------------------------------------------------
.......................................................................................................................................................................................................................................................................................TAAGACAGAAGCTTTTGAGCCTGATTGGAC.....................................................................................................................................................................................3011.001.00----------------1.00---------------------------------------------------------------
.............................................................................................................................................................................................................................................TCTTTTCCGTTCTACAGTC..........................................................................................................................................................................................................................................191.000.001.00-------------------------------------------------------------------------------
..................................................................................................................................................................................................................................................................................................................................................................................................................GCATATTGGCTGGCTGATCA....................................................................2011.001.00----------------------------------------------1.00---------------------------------
......................................................................................................................................................................................................................................................................................................................AATAGGCCGGGAAGCTCGCTT...............................................................................................................................................................2111.001.00----1.00---------------------------------------------------------------------------
...............................................................................................................................................................................................................................................................................................AAGCTTTTGAGCCTGATTGG.......................................................................................................................................................................................2011.001.00----1.00---------------------------------------------------------------------------
....................................................................................................................................................................................................................................................................................................TTTGAGCCTGATTGGACGA...................................................................................................................................................................................1911.001.00-------------------------------------------------1.00------------------------------
...........................................................................................................................................................................................................................................................................................................................................................................ATGGATTTTTCTAGCTGGTA...........................................................................................................201.000.00--1.00-----------------------------------------------------------------------------
...........................................................................................................................................................................................................................................................................................................................................................................ATGGATTTTTCTAGCAGGC............................................................................................................191.000.00---------------------------------1.00----------------------------------------------
....................................................................................................................................................................................................................................................................................................................................................TTCTGGAAAGGCAGGAGAATCAAATG............................................................................................................................2611.001.00----1.00---------------------------------------------------------------------------
...............................................................................................................................................................................................................................................................................................AAGCTTTTGAGCCTGATTTGAC.....................................................................................................................................................................................221.000.00----------1.00---------------------------------------------------------------------
.............................................................................................................................................................................................................................................TCTTTTCCGTTCTACCGAT..........................................................................................................................................................................................................................................191.000.001.00-------------------------------------------------------------------------------
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................AGACGTACTCTGGGAACTGGCT.......................2211.001.00------------------1.00-------------------------------------------------------------
.......................................................................................................................................................................................................................................................................................................................................................TGGAAAGGCAGGAGAATA.................................................................................................................................181.000.00-------------1.00------------------------------------------------------------------
................................................................................................................................................................................................................................................................................GATAGAGTAAGACAGAAGCTTTTGAGCCTG............................................................................................................................................................................................3011.001.00---------------------------------------------------------------------1.00----------
..............................................................................................................................................................................................................................................................AGCTGGGAGACTGAGAGTGATAGAGTAAGT..............................................................................................................................................................................................................301.000.00---------------------------------------------------------------------------1.00----
..........................................................................................................................................................................................................................................................ACAGAGCTGGGAGACTGA..............................................................................................................................................................................................................................1811.001.00------------------------------------------------------------------1.00-------------
...............................................................................................................................................................................................................................................................GCTGGGAGACTGAGAG...........................................................................................................................................................................................................................1670.710.71-----------------------------------------------------------------------------0.71--

Antisense strand
TGAAATTTAATTCAGATCAGCTTAATCATTTGTTTGTTCTCATTCAGAAGGTACGTGTTCAGTCAGACTTGCTTACTTTTAAATTTTCTTAAAATAAGCTCTTTTGAGGTCCTGAATACCCCTCCTCCCCACCAGTTAGCAGTATTTAAATGTACTTTTCTTACGTTGTTAATGTTTTTAGCTCAAGTTTAAAATTTTTGCATATTTTGCCAGTTTGATCGTGAAGCAATTCCTGTGTCTTTTCCGTTCTACAGAGCTGGGAGACTGAGAGTGATAGAGTAAGACAGAAGCTTTTGAGCCTGATTGGACGAATAGGCCGGGAAGCTCGCTTTGAGACCACTTCTGGAAAGGCAGGAGAATCAAATGGATTTTTCTAGCTACAAATGCTCAAAGCAGCTATTTGCATATTGGCTGGCTGATCATATGTAATATTATTGTAGGTTTTAGACGTACTCTGGGAACTGGCTCACCTTCCAACCCTGCCCAGTAG
...............................................................................................................................................................................................................................................((((((((((....)))).))))))((..(((((.......(((...((.((((((..(((((.((....)).)))))..)))))))).)))......)))))..))...((((((((((((.....))))))))).)))...............................................................................................................
........................................................................................................................................................................................................................................233.....................................................................................................................................................385.......................................................................................................
SizePerfect hitTotal NormPerfect NormSRR189782SRR191607(GSM715717)
192genomic small RNA (size selected RNA from . (breast)		SRR040009(GSM532894)
G727T. (cervix)		SRR189784SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR015448(SRR015448)
cytoplasmic small RNAs. (breast)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR189787SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)		TAX577741(Rovira)
total RNA. (breast)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR553576(SRX182782)
source: Testis. (testes)		SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577744(Rovira)
total RNA. (breast)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR343334SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		SRR033719(GSM497064)
6hr Activated B cell line (ABC158). (B cell)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		SRR040041(GSM532926)
G612T. (cervix)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)		SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)		SRR191575(GSM715685)
85genomic small RNA (size selected RNA from t. (breast)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR040028(GSM532913)
G026N. (cervix)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)		SRR040008(GSM532893)
G727N. (cervix)		SRR033726(GSM497071)
Mututated CLL (CLLM633). (B cell)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577590(Rovira)
total RNA. (breast)		SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033720(GSM497065)
EBV activated B cell line (EBV159). (B cell)		DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		TAX577579(Rovira)
total RNA. (breast)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR033714(GSM497059)
Burkitt Lymphoma (BL134). (B cell)		SRR038853(GSM458536)
MELB. (cell line)		SRR444043(SRX128891)
Sample 4cDNABarcode: AF-PP-339: ACG CTC TTC C. (skin)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR040035(GSM532920)
G001T. (cervix)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)		SRR553574(SRX182780)
source: Heart. (Heart)		SRR207119(GSM721081)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		DRR001487(DRX001041)
"Hela long nuclear cell fraction, LNA(+)". (hela)		SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)		SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
......................................................................................................................................................................................................................................................................................................................................................................................TAGCTACAAATGCTCATTGA................................................................................................ 2027.000.00-22.00----3.00-2.00-----------------------------------------------------------------------
......................................................................................................................................................................................................................................................................................................................................................................................TAGCTACAAATGCTCATTG................................................................................................. 194.000.00-3.00----1.00-------------------------------------------------------------------------
.....................TTAATCATTTGTTTGTTC................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 181.000.00-----1.00--------------------------------------------------------------------------
...........................................................................................................................................................................ATGTTTTTAGCTCAACTT............................................................................................................................................................................................................................................................................................................. 181.000.00-1.00------------------------------------------------------------------------------
...................................................................................................................................................................................................TTTTGCATATTTTGCCATTGA.................................................................................................................................................................................................................................................................................. 211.000.00----------1.00---------------------------------------------------------------------
.....................................................................................................................................................................................................................................................CCAGCTCTGTAGAAC...................................................................................................................................................................................................................................... 1580.380.38---------------------------0.120.12-------------------------------------------------0.12-
.................................................................................................................GGAGGAGGGGTATTC.......................................................................................................................................................................................................................................................................................................................................................................... 1550.200.20-----0.20--------------------------------------------------------------------------
.....................................................................................................................................................................................................................................................GTTCTACAGAGCTGGCAGC.................................................................................................................................................................................................................................. 190.120.00-------------------------------------------------------------------------------0.12