| (1) B-CELL | (1) BREAST | (9) CELL-LINE | (2) HEART | (3) HELA | (1) KIDNEY | (2) LIVER | (2) OTHER | (2) SKIN | (1) UTERUS | (1) XRN.ip |
| CTTATTCCATCTGTATGCTACAGCTGTGAGCTTGTAGAACCACCTCCCCATTGGGTAAAAGGGAAGTTTAATCTTTGCAAATTTCAGTCTTTGACCAGTGAGTGCTAACTGTTATTGTGGTTTTGGTGAAACAGACTAGAACTGAGCTCAGATCATCACACTTCAAATACATTTTAATACTTTTTTTTTTTAATCTATAGATCTACTAAACTTGTAATAATTGAGAGATTGCTGCTTCTGGCAGAGCGCT ..........................................................................................................................................((.(((....))).))................................................................................................ ...................................................................................................................................132.................................................................200................................................ | Size | Perfect hit | Total Norm | Perfect Norm | SRR189776(GSM714636) cell line: HEK293clip variant: CLIPenzymatic . (cell line) | SRR189775(GSM714635) cell line: HEK293clip variant: CLIPenzymatic . (cell line) | DRR001485(DRX001039) "Hela long total cell fraction, LNA(+)". (hela) | SRR189777(GSM714637) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR207110(GSM721072) Nuclear RNA. (cell line) | SRR189781(GSM714641) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR189778(GSM714638) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | DRR001486(DRX001040) "Hela long cytoplasmic cell fraction, LNA(+)". (hela) | SRR189785 | SRR189780(GSM714640) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | DRR001482(DRX001036) "Hela long total cell fraction, control". (hela) | SRR330865(SRX091703) tissue: skin psoriatic involveddisease state:. (skin) | SRR342894(SRX096790) small RNA seq of Right atrial tissue. (heart) | SRR553575(SRX182781) source: Kidney. (Kidney) | SRR342901(SRX096797) small RNA seq of Left atrial tissue. (heart) | SRR326279(GSM769509) cytoplasmic fraction was isolated using PARIS. (cell line) | SRR189782 | TAX577739(Rovira) total RNA. (breast) | SRR330901(SRX091739) tissue: skin psoriatic uninvolveddisease stat. (skin) | SRR207115(GSM721077) XRN1&2 knockdown. (XRN1/XRN2 cell line) | SRR033714(GSM497059) Burkitt Lymphoma (BL134). (B cell) | SRR039623(GSM531986) HCV(+) HCC Tissue Sample. (liver) | SRR039622(GSM531985) HCV(+) Adjacent Tissue Sample. (liver) | SRR094129(GSM651905) small RNA(18-35nt)small RNA deep sequencing o. (uterus) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ..............................................................................................................................................................................TAATACTTTTTTTTTTTAATG....................................................... | 21 | 2 | 24.50 | 1.00 | 11.50 | 7.00 | - | 2.50 | - | 1.00 | 2.50 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...................................................................................................................................................................................CTTTTTTTTTTTAATCTACTG.................................................. | 21 | 13.00 | 0.00 | 9.00 | 4.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .................................................................................................................................AACAGACTAGAACTGAGCTCAGATCATCACACTTCAAATACATTTTAATACTTTTTTTTTTTAATCTATAG.................................................. | 71 | 1 | 8.00 | 8.00 | - | - | 7.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..................................................................................................................................ACAGACTAGAACTGAGCTCAGATCATCACACTTCAAATACATTTTAATACTTTTTTTTTTTAATCTATAG.................................................. | 70 | 1 | 7.00 | 7.00 | - | - | 3.00 | - | - | - | - | 4.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...................................................................................................................................................................................................................................ATTGCTGCTTCTGGCAGAG.... | 19 | 1 | 7.00 | 7.00 | - | - | - | - | 7.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...................................................................................................................................CAGACTAGAACTGAGCTCAGATCATCACACTTCAAATACATTTTAATACTTTTTTTTTTTAATCTATAG.................................................. | 69 | 1 | 5.00 | 5.00 | - | - | 5.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..............................................................................................................................................................................TAATACTTTTTTTTTTTATTG....................................................... | 21 | 3.00 | 0.00 | - | 3.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ..............................................................................................................................................................................TAATACTTTTTTTTTTTAAGG....................................................... | 21 | 3.00 | 0.00 | - | 1.00 | - | - | - | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ..............................................................................................................................................................................TAATACTTTTTTTTTTTAAAT....................................................... | 21 | 2.00 | 0.00 | - | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ........................................................................................................................................................................................................ATCTACTAAACTTGTACT................................ | 18 | 2.00 | 0.00 | - | - | - | - | - | - | - | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ................................................................................................................................................................................ATACTTTTTTTTTTTAATAATG.................................................... | 22 | 1.00 | 0.00 | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .................................................................................................................................................................................TACTTTTTTTTTTTAATCTACTG.................................................. | 23 | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...............................................................................................................................................................................AATACTTTTTTTTTTTATGT....................................................... | 20 | 1.00 | 0.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ........................................................................................................................................TAGAACTGAGCTCAGATCATCA............................................................................................ | 22 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - |
| ..............................................................................................................................................................................TAATACTTTTTTTTTTTAAT........................................................ | 20 | 2 | 1.00 | 1.00 | 0.50 | - | - | - | - | - | 0.50 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...................................................................................................................................CAGACTAGAACTGAGC....................................................................................................... | 16 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - |
| ................................................................................................................................................................................ATACTTTTTTTTTTTATCTG...................................................... | 20 | 1.00 | 0.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ..................................................................................................................................................................................ACTTTTTTTTTTTAATCTTTAG.................................................. | 22 | 1.00 | 0.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ..................................................................................................................................................................................ACTTTTTTTTTTTAATCTTGAG.................................................. | 22 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ..............................................................................................................................................................................TAATACTTTTTTTTTTTATG........................................................ | 20 | 1.00 | 0.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ..........................................................................................................................................................................ATTTTAATACTTTTTTTTTTTTTAT....................................................... | 25 | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...................................................................................................................................................................................................................................ATTGCTGCTTCTGGCTGAG.... | 19 | 1.00 | 0.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...............................................................................................................................................................................AATACTTTTTTTTTTTATCTC...................................................... | 21 | 1.00 | 0.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...............................................................................................................................................................................................................................AGAGATTGCTGCTTCCTC......... | 18 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...............................................................................................................................................................................AATACTTTTTTTTTTTAATCTAGAAG................................................. | 26 | 1.00 | 0.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ..................................................................................................................................................................................ACTTTTTTTTTTTAATCGATG................................................... | 21 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ........................TGTGAGCTTGTAGAACTTC............................................................................................................................................................................................................... | 19 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...........................................................................................................................................................................TTTTAATACTTTTTTTTTTTGCT........................................................ | 23 | 1.00 | 0.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ....................................................................................................................................................................................................ATAGATCTACTAAACTTG.................................... | 18 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - |
| ..............................................................................................................................................................................TAATACTTTTTTTTTTACTG........................................................ | 20 | 1.00 | 0.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .................................................................................................................................AACAGACTAGAACTGAGCTCAGATCA............................................................................................... | 26 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - |
| .............................................................................................................................................................................TTAATACTTTTTTTTTTTAACTG...................................................... | 23 | 1.00 | 0.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ................................................................................................................................AAACAGACTAGAACTGAGCTCAGATCATCACACTTCAAATACATTTTAATACTTTTTTTTTTTAATCTATAG.................................................. | 72 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .................................................................................................................................................................................................................................AGATTGCTGCTTCTGGCAGAGCCC. | 24 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | |
| ...................................................................................................................................................................................................................................ATTGCTGCTTCTGGCAGAGCGC. | 22 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - |
| ..........................................................................................................................................................................................................................AATTGAGAGATTGCTGCTTCTGGCAGAGCG.. | 30 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - |
| ..............................................................................................................................................................................TAATACTTTTTTTTTTTAAAGG...................................................... | 22 | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ..............................................................................................................................................................................TAATACTTTTTTTTTTTAAATG...................................................... | 22 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ..............................................................................................................................................................................................................................GAGAGATTGCTGCTTCTGG......... | 19 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - |
| .......................................................................................................................................................................TACATTTTAATACTTTTTTTCC............................................................. | 22 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | |
| ...........................................................................................................................................................................................................................ATTGAGAGATTGCTGCTTC............ | 19 | 2 | 0.50 | 0.50 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 0.50 | - |
| .......................................................................................................................................................................TACATTTTAATACTTTTTTTTT............................................................. | 22 | 3 | 0.33 | 0.33 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 0.33 |
| ..................................................................................................................................................................................ACTTTTTTTTTTTAATCTAT.................................................... | 20 | 3 | 0.33 | 0.33 | - | - | - | - | - | - | 0.33 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| CTTATTCCATCTGTATGCTACAGCTGTGAGCTTGTAGAACCACCTCCCCATTGGGTAAAAGGGAAGTTTAATCTTTGCAAATTTCAGTCTTTGACCAGTGAGTGCTAACTGTTATTGTGGTTTTGGTGAAACAGACTAGAACTGAGCTCAGATCATCACACTTCAAATACATTTTAATACTTTTTTTTTTTAATCTATAGATCTACTAAACTTGTAATAATTGAGAGATTGCTGCTTCTGGCAGAGCGCT ..........................................................................................................................................((.(((....))).))................................................................................................ ...................................................................................................................................132.................................................................200................................................ | Size | Perfect hit | Total Norm | Perfect Norm | SRR189776(GSM714636) cell line: HEK293clip variant: CLIPenzymatic . (cell line) | SRR189775(GSM714635) cell line: HEK293clip variant: CLIPenzymatic . (cell line) | DRR001485(DRX001039) "Hela long total cell fraction, LNA(+)". (hela) | SRR189777(GSM714637) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR207110(GSM721072) Nuclear RNA. (cell line) | SRR189781(GSM714641) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR189778(GSM714638) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | DRR001486(DRX001040) "Hela long cytoplasmic cell fraction, LNA(+)". (hela) | SRR189785 | SRR189780(GSM714640) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | DRR001482(DRX001036) "Hela long total cell fraction, control". (hela) | SRR330865(SRX091703) tissue: skin psoriatic involveddisease state:. (skin) | SRR342894(SRX096790) small RNA seq of Right atrial tissue. (heart) | SRR553575(SRX182781) source: Kidney. (Kidney) | SRR342901(SRX096797) small RNA seq of Left atrial tissue. (heart) | SRR326279(GSM769509) cytoplasmic fraction was isolated using PARIS. (cell line) | SRR189782 | TAX577739(Rovira) total RNA. (breast) | SRR330901(SRX091739) tissue: skin psoriatic uninvolveddisease stat. (skin) | SRR207115(GSM721077) XRN1&2 knockdown. (XRN1/XRN2 cell line) | SRR033714(GSM497059) Burkitt Lymphoma (BL134). (B cell) | SRR039623(GSM531986) HCV(+) HCC Tissue Sample. (liver) | SRR039622(GSM531985) HCV(+) Adjacent Tissue Sample. (liver) | SRR094129(GSM651905) small RNA(18-35nt)small RNA deep sequencing o. (uterus) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| .........................................................................................................................................................................................................TCTACTAAACTTGTACTAT.............................. | 19 | 1.00 | 0.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .......................CTGTGAGCTTGTAGATC.................................................................................................................................................................................................................. | 17 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | |
| ...........TGTATGCTACAGCTGTTATA........................................................................................................................................................................................................................... | 20 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - |