ID: uc001cvs.2_intron_16_0_chr1_54301294_r.5p
GENE: (1)
chr1:54303678-54303927-


(8)
B-CELL
(2)
BRAIN
(5)
BREAST
(27)
CELL-LINE
(1)
CERVIX
(1)
FIBROBLAST
(3)
HELA
(3)
LIVER
(2)
OTHER
(1)
RRP40.ip
(43)
SKIN
(1)
TESTES
(2)
UTERUS
(1)
XRN.ip

Sense strand
CGGCCGTGAGCCGGCCCTGCGCCGGCAGGTCGCGGGACATACTGTGGCGCGTGAGTGCGGCGTGCACTGTGGCACGCACTGCCAGGGTCGGGCCGGGCGGGCAAGCTCTGATCGCGCGTGCGCGCTGGGCGGGGGAGGGCCGGTCCCGGGGCAGCGTGGAGAGAACGCGTGGGGAAGGCACCACTTGGGGGACTGATTGCAGGGTTGTGGGAAGTCCTGAGTGGAAGTTGGTTACGGGGTAGGAGAGGGG
..............................................................................(((((..((.((.((((.(((..((.....))..))).)).)).)))).)))))......................................................................................................................
.............................................................................78............................................................140............................................................................................................
SizePerfect hitTotal NormPerfect NormSRR207116(GSM721078)
Nuclear RNA. (cell line)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR207110(GSM721072)
Nuclear RNA. (cell line)
SRR033717(GSM497062)
Mentle Cell Lymphoma (MCL112). (B cell)
DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)
DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)
SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)
SRR038855(GSM458538)
D10. (cell line)
SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)
SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)
SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)
SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
GSM450604(GSM450604)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR038859(GSM458542)
MM386. (cell line)
TAX577579(Rovira)
total RNA. (breast)
SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR207111(GSM721073)
Whole cell RNA. (cell line)
SRR033710(GSM497055)
GCB DLBCL (GCB385). (B cell)
DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR189782SRR039636(GSM518473)
THP1_cyto_sRNAs. (cell line)
GSM339994(GSM339994)
hues6. (cell line)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
TAX577453(Rovira)
total RNA. (breast)
SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)
SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)
GSM359208(GSM359208)
hepg2_bindASP_hl_2. (cell line)
SRR029124(GSM416753)
HeLa. (hela)
SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)
TAX577588(Rovira)
total RNA. (breast)
DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
GSM339995(GSM339995)
hues6NP. (cell line)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)
SRR040036(GSM532921)
G243N. (cervix)
SRR033716(GSM497061)
Mentle Cell Lymphoma (MCL114). (B cell)
SRR033725(GSM497070)
Unmutated CLL (CLLU626). (B cell)
SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR038854(GSM458537)
MM653. (cell line)
SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)
DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)
DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)
SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)
SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)
TAX577589(Rovira)
total RNA. (breast)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)
SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR037944(GSM510482)
293DcrTN_cand5. (cell line)
SRR363674(GSM830251)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)
SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)
SRR039611(GSM531974)
Human Normal Liver Tissue Sample 1. (liver)
SRR444043(SRX128891)
Sample 4cDNABarcode: AF-PP-339: ACG CTC TTC C. (skin)
SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)
SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)
SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)
SRR189784SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)
SRR330882(SRX091720)
tissue: skin psoriatic uninvolveddisease stat. (skin)
TAX577738(Rovira)
total RNA. (breast)
SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)
SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)
SRR444045(SRX128893)
Sample 6cDNABarcode: AF-PP-341: ACG CTC TTC C. (skin)
SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)
SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)
SRR038852(GSM458535)
QF1160MB. (cell line)
SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR444041(SRX128889)
Sample 2cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)
SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)
SRR330875(SRX091713)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)
SRR444057(SRX128905)
Sample 15cDNABarcode: AF-PP-334: ACG CTC TTC . (skin)
SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)
SRR553576(SRX182782)
source: Testis. (testes)
SRR330858(SRX091696)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)
SRR444054(SRX128902)
Sample 14cDNABarcode: AF-PP-342: ACG CTC TTC . (skin)
SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)
..................................................................................CAGGGTCGGGCCGGGCGGGCA...................................................................................................................................................21111.0011.00---3.00--2.001.00-------1.00--------1.00---1.00----------1.00---1.00--------------------------------------------------------
..................................................................................CAGGGTCGGGCCGGGCGGG.....................................................................................................................................................1918.008.00---1.00--2.001.002.00--------------1.00------------------1.00---------------------------------------------------------
......................................................................................................................................................................................................GCAGGGTTGTGGGAAGTC..................................1816.006.00--5.00-1.00-----------------------------------------------------------------------------------------------
...........................................GTGGCGCGTGAGTGCGGC.............................................................................................................................................................................................1813.003.00----------3.00-----------------------------------------------------------------------------------------
..................................................................................CAGGGTCGGGCCGGGCGGGCAA..................................................................................................................................................2213.003.00-----------1.00-------1.00---------------------------------------1.00----------------------------------------
....................................................................................................................................................................................................TTGCAGGGTTGTGGGAAGTC..................................2013.003.002.00----------------------------------------------------1.00----------------------------------------------
.......................................................................................................................................................................................................CAGGGTTGTGGGAAGTCCTG...............................2013.003.00-3.00--------------------------------------------------------------------------------------------------
...................................................................................AGGGTCGGGCCGGGCGGGCAGAA................................................................................................................................................233.000.00-----------------3.00----------------------------------------------------------------------------------
......................CGGCAGGTCGCGGGACATA.................................................................................................................................................................................................................1913.003.00---------3.00------------------------------------------------------------------------------------------
...............................GCGGGACATACTGTGGCGC........................................................................................................................................................................................................1913.003.003.00---------------------------------------------------------------------------------------------------
.............................................................................................................................................................................................GGACTGATTGCAGGGTTGTGG........................................2113.003.00---------------1.00----2.00-------------------------------------------------------------------------------
.....................................................................................................................GTGCGCGCTGGGCGGGGGA..................................................................................................................1913.003.00--3.00-------------------------------------------------------------------------------------------------
..............................................................................................................................................GTCCCGGGGCAGCGTGGAGA........................................................................................2013.003.00-3.00--------------------------------------------------------------------------------------------------
....................................................................................................................................................................................................TTGCAGGGTTGTGGGAAGTCCCGAG.............................252.000.00--------------2.00-------------------------------------------------------------------------------------
...................................................................................................................................................................................ACCACTTGGGGGACTGATTGCAGG...............................................2412.002.00-----------2.00----------------------------------------------------------------------------------------
...................................................................................................................................................GGGGCAGCGTGGAGAGAA.....................................................................................1812.002.00--------1.00---------------------------------------------1.00---------------------------------------------
..................................................................................CAGGGTCGGGCCGGGCGGGC....................................................................................................................................................2012.002.00------1.00--------------------------------------------------1.00------------------------------------------
..............................................................................................................................................................................AAGGCACCACTTGGGGGACTGATTGC..................................................2612.002.002.00---------------------------------------------------------------------------------------------------
................................................................................................................................................................................................CTGATTGCAGGGTTGTGGG.......................................1912.002.00-2.00--------------------------------------------------------------------------------------------------
...................................................................................................................................................................................ACCACTTGGGGGACTGATTGCA.................................................2212.002.00-------2.00--------------------------------------------------------------------------------------------
.........................................................................................................................................GGCCGGTCCCGGGGC..................................................................................................1531.331.33----------------------------------------------------------------0.33------0.330.33-0.33-------------------------
...............................................................................................................................................................................................ACTGATTGCAGGGTTGTGGGAAG....................................2311.001.00-1.00--------------------------------------------------------------------------------------------------
.....................................................................................................................................................................................................TGCAGGGTTGTGGGAAGTCC.................................2011.001.00-----1.00----------------------------------------------------------------------------------------------
.................................GGGACATACTGTGGCGCGT......................................................................................................................................................................................................1911.001.00--------------------------------1.00-------------------------------------------------------------------
........................................................................................................................................................................................................AGGGTTGTGGGAAGTCCTGAG.............................2111.001.00---------------------1.00------------------------------------------------------------------------------
..............................................................................................................................................................................................................GTGGGAAGTCCTGAGTGGAAGGTGG...................251.000.001.00---------------------------------------------------------------------------------------------------
...................................................................................................................................................................................................................AAGTCCTGAGTGGAAGTTGG...................2011.001.00--------------------------------------1.00-------------------------------------------------------------
..GCCGTGAGCCGGCCCTGCGCCGGCAGG.............................................................................................................................................................................................................................2711.001.00----------------------------------------------------1.00-----------------------------------------------
...................................................................................................................................................................................................ATTGCAGGGTTGTGGGAAG....................................1911.001.00---1.00------------------------------------------------------------------------------------------------
...................................................................................................................................................................................ACCACTTGGGGGACTGATTGC..................................................2111.001.001.00---------------------------------------------------------------------------------------------------
..................................................................................CAGGGTCGGGCCGGGCGGGCAAA.................................................................................................................................................2311.003.00------------------------------------------------1.00---------------------------------------------------
.....................................................................................................................................................................................................TGCAGGGTTGTGGGAAGTC..................................1911.001.00-1.00--------------------------------------------------------------------------------------------------
....................................................................................GGGTCGGGCCGGGCGGGCA...................................................................................................................................................1911.001.00---------------------------1.00------------------------------------------------------------------------
.........GCCGGCCCTGCGCCGGCAGGTCGCGGGAC....................................................................................................................................................................................................................2911.001.001.00---------------------------------------------------------------------------------------------------
.......................................................................................................................................................................................................CAGGGTTGTGGGAAGTCCTGAG.............................2211.001.001.00---------------------------------------------------------------------------------------------------
.................................................................................CCAGGGTCGGGCCGGGTT.......................................................................................................................................................181.000.00----------------1.00-----------------------------------------------------------------------------------
.........................................................................................GGGCCGGGCGGGCAAGCTCTGATCGAGCG....................................................................................................................................291.000.00----1.00-----------------------------------------------------------------------------------------------
....................................................................................GGGTCGGGCCGGGCGGGCAC..................................................................................................................................................2011.001.00-----------------------1.00----------------------------------------------------------------------------
....................................ACATACTGTGGCGCGTTTTG..................................................................................................................................................................................................201.000.00---------------1.00------------------------------------------------------------------------------------
....................................................................................................................................................................................CCACTTGGGGGACTGCA.....................................................171.000.00------------1.00---------------------------------------------------------------------------------------
.................................................................................................................................................................AGAACGCGTGGGGAAGGC.......................................................................1811.001.001.00---------------------------------------------------------------------------------------------------
......................................................................................................................................................................................................GCAGGGTTGTGGGAAGAC..................................181.000.00--1.00-------------------------------------------------------------------------------------------------
.......................................................................................................................................................................................................CAGGGTTGTGGGAAGTCC.................................1811.001.001.00---------------------------------------------------------------------------------------------------
........................................................................................................................................................................................................AGGGTTGTGGGAAGTCCTG...............................1911.001.00--------------------------------------------------------------1.00-------------------------------------
.....................................................................................GGTCGGGCCGGGCGGGCAG..................................................................................................................................................191.000.00--------------------------1.00-------------------------------------------------------------------------
........................................................................................................................................................................................................AGGGTTGTGGGAAGTCCTGAGTGG..........................2411.001.00-------------------------------------------------1.00--------------------------------------------------
......................................................................................................................................................................................................GCAGGGTTGTGGGAAGTCCT................................2011.001.00----1.00-----------------------------------------------------------------------------------------------
..............................CGCGGGACATACTGTGGC..........................................................................................................................................................................................................1811.001.00-1.00--------------------------------------------------------------------------------------------------
................................................................................................................................................CCCGGGGCAGCGTGGAGAGAAC....................................................................................2211.001.00------------------------------1.00---------------------------------------------------------------------
.......................................................................................................................................................CAGCGTGGAGAGAACTCTG................................................................................191.000.00------------------------------------1.00---------------------------------------------------------------
..................................................................................................................................................................................................................................GTTGGTTACGGGGTAGGAGAGGG.2311.001.00----------------1.00-----------------------------------------------------------------------------------
.....................CCGGCAGGTCGCGGGACATACTGT.............................................................................................................................................................................................................2411.001.00-----------------------------------------------1.00----------------------------------------------------
......................................................................................................................................................................GCGTGGGGAAGGCACCACTTGGGG............................................................2411.001.00-----------------------------------------1.00----------------------------------------------------------
.........GCCGGCCCTGCGCCGGCAGGTCGCGGGACATAC................................................................................................................................................................................................................3311.001.00-----------------------------1.00----------------------------------------------------------------------
..................................................................................................................................................................................CACCACTTGGGGGACTGAT.....................................................1911.001.00------------------------1.00---------------------------------------------------------------------------
...............................................................................................................................................................................................ACTGATTGCAGGGTTGTGGG.......................................2011.001.00---------------------------------------------------1.00------------------------------------------------
.......................................................................................................................................................................................CTTGGGGGACTGATTGCAGGG..............................................2111.001.001.00---------------------------------------------------------------------------------------------------
..................................................................................CAGGGTCGGGCCGGGCGGGTA...................................................................................................................................................2111.008.00-------------------------------------------------------------1.00--------------------------------------
..................................................................................................................................................................................................GATTGCAGGGTTGTGGGA......................................1811.001.00--------1.00-------------------------------------------------------------------------------------------
.....................................................................................................................................................................................CACTTGGGGGACTGATTG...................................................1811.001.00-1.00--------------------------------------------------------------------------------------------------
...................................................................................................................................................................AACGCGTGGGGAAGGCACCACTTGGGGGACTGA......................................................3311.001.00-------------------------1.00--------------------------------------------------------------------------
..........................................................................................GGCCGGGCGGGCAAGCTCTGATCGCGCGTG..................................................................................................................................3011.001.00--------------------------------------------------1.00-------------------------------------------------
......................................................................................................................................................................................ACTTGGGGGACTGATTGC..................................................1811.001.00---------------------1.00------------------------------------------------------------------------------
..................................................................................................................................GGGGGAGGGCCGGTCCCCC.....................................................................................................191.000.00-----------------------------------1.00----------------------------------------------------------------
..............................................................................................................................................................................AAGGCACCACTTGGGGGACTGATTGCAGGG..............................................3011.001.00----1.00-----------------------------------------------------------------------------------------------
.........................CAGGTCGCGGGACATACTGTGGCGCGC......................................................................................................................................................................................................271.000.00--------------1.00-------------------------------------------------------------------------------------
.......................................................................................................................................................................................................................CCTGAGTGGAAGTTGGTT.................1811.001.00-------------1.00--------------------------------------------------------------------------------------
.......................................................................................................................................................................................CTTGGGGGACTGATTGCAGGT..............................................211.000.001.00---------------------------------------------------------------------------------------------------
...................................................................................AGGGTCGGGCCGGGCGGG.....................................................................................................................................................1811.001.00---------------------------------------------1.00------------------------------------------------------
......................................................................................................................................................................................ACTTGGGGGACTGATTGCA.................................................1911.001.00---1.00------------------------------------------------------------------------------------------------
..........................................................................................................................CGCTGGGCGGGGGAGGGC..............................................................................................................1811.001.00---------------------------1.00------------------------------------------------------------------------
...........................................................................................................................................................GTGGAGAGAACGCGTGGGGA...........................................................................2011.001.00-------------1.00--------------------------------------------------------------------------------------
........................................................................................................................................................................................TTGGGGGACTGATTGCAGGG..............................................2011.001.00-1.00--------------------------------------------------------------------------------------------------
.........................................................................................................................................................GCGTGGAGAGAACGCGTGGGGA...........................................................................2211.001.00-------------1.00--------------------------------------------------------------------------------------
...................................................................................................................................................................................................................AAGTCCTGAGTGGAAGT......................1711.001.00-----1.00----------------------------------------------------------------------------------------------
..................................................................................CAGGGTCGGGCCGGGCGGGA....................................................................................................................................................2011.008.00------------1.00---------------------------------------------------------------------------------------
.....................................CATACTGTGGCGCGTGAGTG.................................................................................................................................................................................................2011.001.00----------------------------------------------1.00-----------------------------------------------------
............................................................................................................................................................................................................................GTGGAAGTTGGTTACGGG............1811.001.00----1.00-----------------------------------------------------------------------------------------------
...........................................................................................................................GCTGGGCGGGGGAGGGTG.............................................................................................................181.000.00----------------------1.00-----------------------------------------------------------------------------
..............................................................................................................................................................................................GACTGATTGCAGGGTTGTGG........................................2011.001.00-1.00--------------------------------------------------------------------------------------------------
....................................ACATACTGTGGCGCGTGA....................................................................................................................................................................................................1811.001.00-------------------1.00--------------------------------------------------------------------------------
................................CGGGACATACTGTGGCG.........................................................................................................................................................................................................1711.001.00-----1.00----------------------------------------------------------------------------------------------
.................................................................................CCAGGGTCGGGCCGGGCGGGC....................................................................................................................................................2111.001.00------------1.00---------------------------------------------------------------------------------------
.......................................TACTGTGGCGCGTGAGTGCGGCGTGCA........................................................................................................................................................................................2711.001.00-------------------------------------1.00--------------------------------------------------------------
........................................................................................................................................GGGCCGGTCCCGGGGC..................................................................................................1611.001.00---------------------------------1.00------------------------------------------------------------------
..........................................................................................................................................................................................................................................CGGGGTAGGAGAGGGCA171.000.00----------------------------------------1.00-----------------------------------------------------------
....................................................................................GGGTCGGGCCGGGCGGGCG...................................................................................................................................................191.000.00------------------1.00---------------------------------------------------------------------------------
........................................................................................................................CGCGCTGGGCGGGGGGG.................................................................................................................171.000.00------------------1.00---------------------------------------------------------------------------------
.........................................................CGGCGTGCACTGTGGCA................................................................................................................................................................................1711.001.00------------------------------------------------------------1.00---------------------------------------
.......................GGCAGGTCGCGGGACATACT...............................................................................................................................................................................................................2011.001.00--------------------------------------------------------1.00-------------------------------------------
.........................................................................................................................................................................TGGGGAAGGCACCACTTGGGGGACCG.......................................................261.000.00-------------------------1.00--------------------------------------------------------------------------
........AGCCGGCCCTGCGCCGGCAGGTCGCGGG......................................................................................................................................................................................................................2811.001.00----------------------------------------------------------1.00-----------------------------------------
...........................................................................................................................................................................................................GTTGTGGGAAGTCCTGAG.............................1811.001.00-----1.00----------------------------------------------------------------------------------------------
..............................CGCGGGACATACTGTGGCGCGTT.....................................................................................................................................................................................................231.000.00--------------------------1.00-------------------------------------------------------------------------
.........................................................................................................................................GGCCGGTCCCGGGGCC.................................................................................................1630.671.33-----------------------------------------------------------------0.67----------------------------------
............................................................................................................................................................................................................TTGTGGGAAGTCCTGAG.............................1720.500.50----0.50-----------------------------------------------------------------------------------------------
....................................................................................GGGTCGGGCCGGGCGGG.....................................................................................................................................................1730.330.33-------------------------------------------------------------------------0.33--------------------------
..................................................................................CAGGGTCGGGCCGGGTTAG.....................................................................................................................................................1990.330.11------------------------------------0.11-------------------------------0.11-----------0.11-------------------
...............................................................................................................................................................................................................................GAAGTTGGTTACGGG............1530.330.33--------------------------------------------------------------------0.33-------------------------------
..................................................................................CAGGGTCGGGCCGGGATA......................................................................................................................................................1890.110.11--------------------------------------------------------------------------------0.11-------------------
..................................................................................CAGGGTCGGGCCGGG.........................................................................................................................................................1590.110.11-------------------------------0.11--------------------------------------------------------------------

Antisense strand
CGGCCGTGAGCCGGCCCTGCGCCGGCAGGTCGCGGGACATACTGTGGCGCGTGAGTGCGGCGTGCACTGTGGCACGCACTGCCAGGGTCGGGCCGGGCGGGCAAGCTCTGATCGCGCGTGCGCGCTGGGCGGGGGAGGGCCGGTCCCGGGGCAGCGTGGAGAGAACGCGTGGGGAAGGCACCACTTGGGGGACTGATTGCAGGGTTGTGGGAAGTCCTGAGTGGAAGTTGGTTACGGGGTAGGAGAGGGG
..............................................................................(((((..((.((.((((.(((..((.....))..))).)).)).)))).)))))......................................................................................................................
.............................................................................78............................................................140............................................................................................................
SizePerfect hitTotal NormPerfect NormSRR207116(GSM721078)
Nuclear RNA. (cell line)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR207110(GSM721072)
Nuclear RNA. (cell line)
SRR033717(GSM497062)
Mentle Cell Lymphoma (MCL112). (B cell)
DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)
DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)
SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)
SRR038855(GSM458538)
D10. (cell line)
SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)
SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)
SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)
SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
GSM450604(GSM450604)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR038859(GSM458542)
MM386. (cell line)
TAX577579(Rovira)
total RNA. (breast)
SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR207111(GSM721073)
Whole cell RNA. (cell line)
SRR033710(GSM497055)
GCB DLBCL (GCB385). (B cell)
DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR189782SRR039636(GSM518473)
THP1_cyto_sRNAs. (cell line)
GSM339994(GSM339994)
hues6. (cell line)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
TAX577453(Rovira)
total RNA. (breast)
SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)
SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)
GSM359208(GSM359208)
hepg2_bindASP_hl_2. (cell line)
SRR029124(GSM416753)
HeLa. (hela)
SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)
TAX577588(Rovira)
total RNA. (breast)
DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
GSM339995(GSM339995)
hues6NP. (cell line)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)
SRR040036(GSM532921)
G243N. (cervix)
SRR033716(GSM497061)
Mentle Cell Lymphoma (MCL114). (B cell)
SRR033725(GSM497070)
Unmutated CLL (CLLU626). (B cell)
SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR038854(GSM458537)
MM653. (cell line)
SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)
DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)
DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)
SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)
SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)
TAX577589(Rovira)
total RNA. (breast)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)
SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR037944(GSM510482)
293DcrTN_cand5. (cell line)
SRR363674(GSM830251)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)
SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)
SRR039611(GSM531974)
Human Normal Liver Tissue Sample 1. (liver)
SRR444043(SRX128891)
Sample 4cDNABarcode: AF-PP-339: ACG CTC TTC C. (skin)
SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)
SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)
SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)
SRR189784SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)
SRR330882(SRX091720)
tissue: skin psoriatic uninvolveddisease stat. (skin)
TAX577738(Rovira)
total RNA. (breast)
SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)
SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)
SRR444045(SRX128893)
Sample 6cDNABarcode: AF-PP-341: ACG CTC TTC C. (skin)
SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)
SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)
SRR038852(GSM458535)
QF1160MB. (cell line)
SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR444041(SRX128889)
Sample 2cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)
SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)
SRR330875(SRX091713)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)
SRR444057(SRX128905)
Sample 15cDNABarcode: AF-PP-334: ACG CTC TTC . (skin)
SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)
SRR553576(SRX182782)
source: Testis. (testes)
SRR330858(SRX091696)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)
SRR444054(SRX128902)
Sample 14cDNABarcode: AF-PP-342: ACG CTC TTC . (skin)
SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)
..............................................................................................................................CGGCCCTCCCCCGCCC............................................................................................................ 1687.007.00------------------0.12----------0.250.250.120.120.120.120.12---------------------------0.750.38--0.25-0.380.38----0.250.250.250.250.25-0.120.120.120.120.120.120.120.120.120.120.120.120.120.120.120.120.120.120.12
.....................ATGTCCCGCGACCTGCCGG.................................................................................................................................................................................................................. 1913.003.00--3.00-------------------------------------------------------------------------------------------------
........................................................................................................................................................................................................AGGGTTGTGGGAAGTAAAC............................... 191.000.00----------------------------------1.00-----------------------------------------------------------------
..........................................................................................................TCTGATCGCGCGTGCCGA.............................................................................................................................. 181.000.00----------------------1.00-----------------------------------------------------------------------------
.........GCCGGCCCTGCGCCGGGGG.............................................................................................................................................................................................................................. 191.000.00----------------------------1.00-----------------------------------------------------------------------
...........................................................................CCGGCCCGACCCTGGCAGTGC.......................................................................................................................................................... 2111.001.00--------------------------------------------1.00-------------------------------------------------------
....................................................................................................................................................................................ATCAGTCCCCCAAGTGG..................................................... 1711.001.00-----1.00----------------------------------------------------------------------------------------------
................................................................................................................................GCGGGGGAGGGCCGGGGG........................................................................................................ 181.000.00-------------------------------1.00--------------------------------------------------------------------
...............................................................................................................................GGCGGGGGAGGGCCGAA.......................................................................................................... 171.000.00-------------------------------------------------------1.00--------------------------------------------
........................................................................................................................................................................................................................................TACGGGGTAGGAGAGGGCAA 201.000.00----------------1.00-----------------------------------------------------------------------------------
...................CGCGACCTGCCGGCG........................................................................................................................................................................................................................ 1530.670.67------------------------------------------------------------------0.67---------------------------------
..............................................................................................................................CCGGCCCTCCCCCGCCC........................................................................................................... 1770.140.14-------------------------------------------------------------------0.14--------------------------------
...............................................................................................................................CCGGCCCTCCCCCGCC........................................................................................................... 1680.120.12-------------------------------------------------------------------0.12--------------------------------