ID: uc001cnf.2_intron_9_0_chr1_45798507_r
GENE: (6)
chr1:45798457-45798639-


(2)
AGO2.ip 		(28)
B-CELL 		(12)
BRAIN 		(5)
BREAST 		(20)
CELL-LINE 		(1)
HEART 		(5)
LIVER 		(1)
OTHER 		(5)
SKIN 		(1)
TESTES 		(1)
XRN.ip

Sense strand
GGCTATAGAAGTGGCCTACACTGCAGGACCTGGCCAGTGCTTCCCTGGAGGTGAGAGCCACCCTAGGGTAGGGGAAATAGGAACAATAGAGGGACTGACGGGTGATCTCTTTGACCTCTGATCCTACCCACAGGAGGTGAATCAACTCTGGGCTGGCCTGGGCTACTATTCTCGTGGCCGGCG
..............................................................................................(((..((((((((............))))..)))).)))..................................................
..................................................................................83................................................133................................................
SizePerfect hitTotal NormPerfect NormSRR033719(GSM497064)
6hr Activated B cell line (ABC158). (B cell)		SRR033720(GSM497065)
EBV activated B cell line (EBV159). (B cell)		SRR015365(GSM380330)
Memory B cells (MM139). (B cell)		SRR015360(GSM380325)
Plasma B cells (PC137). (B cell)		SRR015358(GSM380323)
NaÌøve B Cell (Naive39). (B cell)		SRR015359(GSM380324)
Germinal Center B cell (GC136). (B cell)		SRR015361(GSM380326)
Memory B cells (MM55). (B cell)		SRR015362(GSM380327)
NaÌøve B Cell (Naive138). (B cell)		SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR033716(GSM497061)
Mentle Cell Lymphoma (MCL114). (B cell)		GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)		SRR015363(GSM380328)
Germinal Center B cell (GC40). (B cell)		SRR033710(GSM497055)
GCB DLBCL (GCB385). (B cell)		SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)		SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)		GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR015364(GSM380329)
Plasma B cells (PC44). (B cell)		SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)		SRR033725(GSM497070)
Unmutated CLL (CLLU626). (B cell)		SRR033726(GSM497071)
Mututated CLL (CLLM633). (B cell)		SRR033723(GSM497068)
L1236 cell line (L1236). (B cell)		GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR033731(GSM497076)
h929 Cell line (h929). (B cell)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR033732(GSM497077)
bjab cell line (bjab103). (B cell)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		GSM450600(GSM450600)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR033714(GSM497059)
Burkitt Lymphoma (BL134). (B cell)		SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)		SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)		SRR191605(GSM715715)
76genomic small RNA (size selected RNA from t. (breast)		SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		TAX577580(Rovira)
total RNA. (breast)		SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		GSM450607(GSM450607)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR343332(GSM796035)
"KSHV (HHV8), EBV (HHV-4)". (cell line)		SRR033717(GSM497062)
Mentle Cell Lymphoma (MCL112). (B cell)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR060985(GSM569189)
Human naive B cell [09-001]. (cell line)		SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)		SRR039636(GSM518473)
THP1_cyto_sRNAs. (cell line)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR038861(GSM458544)
MM466. (cell line)		TAX577590(Rovira)
total RNA. (breast)		GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)		SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		SRR553576(SRX182782)
source: Testis. (testes)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		TAX577744(Rovira)
total RNA. (breast)		SRR038863(GSM458546)
MM603. (cell line)		GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		GSM450597(GSM450597)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR039637(GSM518474)
THP1_total_sRNAs. (cell line)		SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)		SRR039611(GSM531974)
Human Normal Liver Tissue Sample 1. (liver)		SRR390724(GSM850203)
small rna immunoprecipitated. (cell line)		SRR390723(GSM850202)
total small RNA. (cell line)		SRR444059(SRX128907)
Sample 17cDNABarcode: AF-PP-339: ACG CTC TTC . (skin)		SRR444060(SRX128908)
Sample 18cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)
.......................................................................................AGAGGGACTGACGGGGGCA.............................................................................19398.000.6714.0014.006.001.002.003.005.00--5.002.002.003.00-2.002.00-2.002.00--3.00-3.00-2.001.002.002.00-2.00--1.002.001.001.001.00-1.001.00-------1.001.001.00---1.00-----1.00--1.00---1.001.00--1.001.00-----
.......................................................................................AGAGGGACTGACGGGGGC..............................................................................18338.000.67--1.002.005.002.003.00---2.002.00-3.001.00--1.00-2.001.00---3.001.00-1.00---1.00---1.00-1.00--------------1.00---1.00--1.00----1.00--------1.00----
.......................................................................................AGAGGGACTGACGGGGG...............................................................................17319.000.67--2.002.001.001.00-7.00-----1.00------1.00----------------------1.00-----------1.00------1.00--1.00------------
..............................................................................................................TTGACCTCTGATCCTACCCACT...................................................227.000.00--------6.00----------------------------------------------------1.00----------------
.......................................................................................AGAGGGACTGACGGGGAA..............................................................................1836.000.672.002.001.00------------1.00--------------------------------------------------------------
..............................................................................................................TTGACCTCTGATCCTACCCACA...................................................2215.005.00----------------4.00---------------------1.00---------------------------------------
.........................................................................................AGGGACTGACGGGTGCAT............................................................................185.000.00---2.001.00-------1.00----------------------------1.00------------------------------------
..............CCTACACTGCAGGACCTGGCCAGTATC..............................................................................................................................................273.000.00----------------------3.00-------------------------------------------------------
.......................................................................................AGAGGGACTGACGGGCATT.............................................................................1932.000.67---2.00--------------------------------------------------------------------------
..........................................................................................GGGACTGACGGGTGATCTCTTTGA.....................................................................2412.002.00--------------------------------2.00---------------------------------------------
..........................................................................................GGGACTGACGGGTGATCTCTTTGACCTCTG...............................................................3011.001.00-----------------------------1.00------------------------------------------------
.......................................................................................AGAGGGACTGACGGGGGTA.............................................................................1931.000.67------------------1.00-----------------------------------------------------------
.......................................................................................................................................................................ATTCTCGTGGCCGGCTCCA191.000.00---------------1.00--------------------------------------------------------------
..........................................................................................GGGACTGACGGGTGATC............................................................................1711.001.00--------------------1.00---------------------------------------------------------
...................................................TGAGAGCCACCCTAGGGTAGGGGAAATAGGAAC...................................................................................................3311.001.00--------------------------------------------1.00---------------------------------
.......................................................................................AGAGGGACTGACGGGGCCG.............................................................................1931.000.67----------1.00-------------------------------------------------------------------
.......................................................................................AGAGGGACTGACGGGGCAT.............................................................................1931.000.67----------------------------------------------------------1.00-------------------
.......................................................................................AGAGGGACTGACGGGGGT..............................................................................1831.000.67---1.00--------------------------------------------------------------------------
.......................................................................................AGAGGGACTGACGGGGAC..............................................................................1831.000.67-----1.00------------------------------------------------------------------------
.......................................................................................AGAGGGACTGACGGGTGC..............................................................................181.000.00---------------------------------------------------1.00--------------------------
...............................................................................................................................................AACTCTGGGCTGGCCTGGGCTACTAT..............2611.001.00------------------------------------------1.00-----------------------------------
.......................................................................................AGAGGGACTGACGGGGGCG.............................................................................1931.000.67-------------------1.00----------------------------------------------------------
....................................................................................................................TCTGATCCTACCCACAG..................................................1711.001.00-----------------------------------------------1.00------------------------------
..............................................................................................................TTGACCTCTGATCCTACCCACAG..................................................2311.001.00-----------------------------------------------------1.00------------------------
..............................................................................AGGAACAATAGAGGGACTGACGGG.................................................................................2411.001.00----------------------------------------------1.00-------------------------------
.......................................................................................AGAGGGACTGACGGGGGG..............................................................................1831.000.67-----1.00------------------------------------------------------------------------
.............................................................................................................TTTGACCTCTGATCCTACCCACA...................................................2311.001.00---------------------------------------------------------------------1.00--------
......................................................................................TAGAGGGACTGACGGGTGA..............................................................................1911.001.00------------------------------------1.00-----------------------------------------
...............................................................................................................................................AACTCTGGGCTGGCCTGGGCTACT................2411.001.00----------------------------------------------------------------------1.00-------
.................................................................GGGTAGGGGAAATAGGAAC...................................................................................................1911.001.00---------------------------------------------1.00--------------------------------
.......................................................................................AGAGGGACTGACGGGGCA..............................................................................1831.000.67---------------------------------------------------------1.00--------------------
.......................................................................................AGAGGGACTGACGGGGGGA.............................................................................1931.000.67--------------------------1.00---------------------------------------------------
.......GAAGTGGCCTACACTGCAGGACCTGGCCAGTG................................................................................................................................................3211.001.00-----------------------------1.00------------------------------------------------
.......................................................................................AGAGGGACTGACGGGGCCA.............................................................................1931.000.67-----------1.00------------------------------------------------------------------
...........................................................................................................TCTTTGACCTCTGATCCTACCCACAG..................................................2611.001.00-------------------------------1.00----------------------------------------------
.........................................................................................AGGGACTGACGGGTGCATT...........................................................................191.000.00--------------1.00---------------------------------------------------------------
.......................................................................................AGAGGGACTGACGGG.................................................................................1530.670.67--------------------------------------------------------------------------0.330.33--

Antisense strand
GGCTATAGAAGTGGCCTACACTGCAGGACCTGGCCAGTGCTTCCCTGGAGGTGAGAGCCACCCTAGGGTAGGGGAAATAGGAACAATAGAGGGACTGACGGGTGATCTCTTTGACCTCTGATCCTACCCACAGGAGGTGAATCAACTCTGGGCTGGCCTGGGCTACTATTCTCGTGGCCGGCG
..............................................................................................(((..((((((((............))))..)))).)))..................................................
..................................................................................83................................................133................................................
SizePerfect hitTotal NormPerfect NormSRR033719(GSM497064)
6hr Activated B cell line (ABC158). (B cell)		SRR033720(GSM497065)
EBV activated B cell line (EBV159). (B cell)		SRR015365(GSM380330)
Memory B cells (MM139). (B cell)		SRR015360(GSM380325)
Plasma B cells (PC137). (B cell)		SRR015358(GSM380323)
NaÌøve B Cell (Naive39). (B cell)		SRR015359(GSM380324)
Germinal Center B cell (GC136). (B cell)		SRR015361(GSM380326)
Memory B cells (MM55). (B cell)		SRR015362(GSM380327)
NaÌøve B Cell (Naive138). (B cell)		SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR033716(GSM497061)
Mentle Cell Lymphoma (MCL114). (B cell)		GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)		SRR015363(GSM380328)
Germinal Center B cell (GC40). (B cell)		SRR033710(GSM497055)
GCB DLBCL (GCB385). (B cell)		SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)		SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)		GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR015364(GSM380329)
Plasma B cells (PC44). (B cell)		SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)		SRR033725(GSM497070)
Unmutated CLL (CLLU626). (B cell)		SRR033726(GSM497071)
Mututated CLL (CLLM633). (B cell)		SRR033723(GSM497068)
L1236 cell line (L1236). (B cell)		GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR033731(GSM497076)
h929 Cell line (h929). (B cell)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR033732(GSM497077)
bjab cell line (bjab103). (B cell)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		GSM450600(GSM450600)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR033714(GSM497059)
Burkitt Lymphoma (BL134). (B cell)		SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)		SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)		SRR191605(GSM715715)
76genomic small RNA (size selected RNA from t. (breast)		SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		TAX577580(Rovira)
total RNA. (breast)		SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		GSM450607(GSM450607)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR343332(GSM796035)
"KSHV (HHV8), EBV (HHV-4)". (cell line)		SRR033717(GSM497062)
Mentle Cell Lymphoma (MCL112). (B cell)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR060985(GSM569189)
Human naive B cell [09-001]. (cell line)		SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)		SRR039636(GSM518473)
THP1_cyto_sRNAs. (cell line)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR038861(GSM458544)
MM466. (cell line)		TAX577590(Rovira)
total RNA. (breast)		GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)		SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		SRR553576(SRX182782)
source: Testis. (testes)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		TAX577744(Rovira)
total RNA. (breast)		SRR038863(GSM458546)
MM603. (cell line)		GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		GSM450597(GSM450597)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR039637(GSM518474)
THP1_total_sRNAs. (cell line)		SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)		SRR039611(GSM531974)
Human Normal Liver Tissue Sample 1. (liver)		SRR390724(GSM850203)
small rna immunoprecipitated. (cell line)		SRR390723(GSM850202)
total small RNA. (cell line)		SRR444059(SRX128907)
Sample 17cDNABarcode: AF-PP-339: ACG CTC TTC . (skin)		SRR444060(SRX128908)
Sample 18cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)
....................................................................................................................TCTGATCCTACCCACAAGT................................................ 191.000.00---------------------------------1.00--------------------------------------------
....................................GTGCTTCCCTGGAGGGGC................................................................................................................................. 181.000.00------------------------------------------------------------------1.00-----------
...........TGGCCTACACTGCAGTTAT......................................................................................................................................................... 191.000.00--------------------------1.00---------------------------------------------------
..................................................................TTCCTATTTCCCCTACC.................................................................................................... 1750.400.40----------------------------------------------------------------------------0.200.20