| (1) AGO3.ip | (1) BRAIN | (6) CELL-LINE | (5) HELA | (2) LIVER | (1) OTHER | (4) SKIN | (1) XRN.ip |
| ATTGTTATGAGACAGATATATCTTCATCTATGAAGAATATACCTAGATCTGAGAATATACTTAGAGTCCCTAACACAGTTTTTGGCACGTAGTAAATGTCAGAGGGTAGTGGTATTAATCATGGTGTTGCTATTAAGACAATGTAGACACTGGAGTAATGGTATGGAATGGCTGTAACGGTCCTTGTGTTCATATCACAGGTGCAAACGGAGGTTCTTCAGAAGAGGCAGCAGGAGAAAGCCCATATGAT ................................................................................................((((....((((((..(((((....)))))..))))))..)))).....(((..((.(((.((........)).))).))...))).................................................................... .........................................................................................90............................................................................................184................................................................ | Size | Perfect hit | Total Norm | Perfect Norm | DRR001485(DRX001039) "Hela long total cell fraction, LNA(+)". (hela) | DRR001486(DRX001040) "Hela long cytoplasmic cell fraction, LNA(+)". (hela) | SRR039622(GSM531985) HCV(+) Adjacent Tissue Sample. (liver) | DRR001488(DRX001042) "Hela short nuclear cell fraction, LNA(+)". (hela) | SRR330906(SRX091744) tissue: normal skindisease state: normal. (skin) | SRR189787 | SRR189782 | SRR037937(GSM510475) 293cand2. (cell line) | SRR189785 | SRR330902(SRX091740) tissue: skin psoriatic uninvolveddisease stat. (skin) | SRR037936(GSM510474) 293cand1. (cell line) | SRR553572(SRX182778) source: Frontal Cortex. (Frontal Cortex) | SRR189780(GSM714640) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | DRR001489(DRX001043) "Hela short nuclear cell fraction, control". (hela) | GSM1105750AGO3(GSM1105750) small RNA sequencing data. (ago3 hela) | SRR107296(GSM677703) 18-30nt fraction of small RNA. (cell line) | GSM450605(GSM450605) miRNA sequencing raw reads from post-mortem s. (brain) | SRR326280(GSM769510) total cell content of unperturbed cells was s. (cell line) | SRR330866(SRX091704) tissue: skin psoriatic involveddisease state:. (skin) | SRR039623(GSM531986) HCV(+) HCC Tissue Sample. (liver) | SRR330874(SRX091712) tissue: skin psoriatic involveddisease state:. (skin) | SRR207115(GSM721077) XRN1&2 knockdown. (XRN1/XRN2 cell line) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ..................................................................................................................................TATTAAGACAATGTAGACACTGGAGTAATGGTATGGAATGGCTGTAACGGTCCTTGTGTTCATATCACAG.................................................. | 70 | 1 | 19.00 | 19.00 | 7.00 | 12.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .................................................................................................................................CTATTAAGACAATGTAGACACTGGAGTAATGGTATGGAATGGCTGTAACGGTCCTTGTGTTCATATCACAG.................................................. | 71 | 1 | 16.00 | 16.00 | 15.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ................................................................................................................................GCTATTAAGACAATGTAGACACTGGAGTAATGGTATGGAATGGCTGTAACGGTCCTTGTGTTCATATCA..................................................... | 69 | 1 | 7.00 | 7.00 | - | 7.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ......................................................................................................................................AAGACAATGTAGACACTGGAGTAATGGTATGGAATGGCTGTAACGGTCCTTGTGTTCATATCACAG.................................................. | 66 | 1 | 5.00 | 5.00 | 5.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ................................................................................................................................GCTATTAAGACAATGTAGACACTGGAGTAATGGTATGGAATGGCTGTAACGGTCCTTGTGTTCATATCACA................................................... | 71 | 1 | 4.00 | 4.00 | 4.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..................................................................................................................................TATTAAGACAATGTAGACACTGGAGTAATGGTATGGAATGGCTGTAACGGTCCTTGTGTTCATATCACA................................................... | 69 | 1 | 4.00 | 4.00 | - | 4.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..................................................................................................................................................................ATGGAATGGCTGTAACGG...................................................................... | 18 | 1 | 3.00 | 3.00 | - | - | - | 2.00 | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - |
| ...............................................................................................................................................................................................................................GAGGCAGCAGGAGAAAAA......... | 18 | 2.00 | 0.00 | - | - | - | - | - | - | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ..........................................................................................................................................CAATGTAGACACTGGAGTAATGGTATGG.................................................................................... | 28 | 1 | 2.00 | 2.00 | - | - | - | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..............................................................................................AATGTCAGAGGGTAGTGGTATT...................................................................................................................................... | 22 | 1 | 2.00 | 2.00 | - | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ............................................................................................................................................ATGTAGACACTGGAGGTG............................................................................................ | 18 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | |
| ............................................................................................................................................................AATGGTATGGAATGGAGGC........................................................................... | 19 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | |
| ....................................................................................................................................................................GGAATGGCTGTAACGGTCCTTGTGTTC........................................................... | 27 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - |
| ............................................................................................................................................................................................................................GAAGAGGCAGCAGGAGTA............ | 18 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | |
| ...........................................................................................................................................................................................................CAAACGGAGGTTCTTCAGAAGA......................... | 22 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - |
| ..............................................................................................................................................GTAGACACTGGAGTATG........................................................................................... | 17 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | |
| ............................................................................................................................................................................................................................GAAGAGGCAGCAGGAGAAAGCCCA...... | 24 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - |
| .........................................................................................................................................................................................................................TCAGAAGAGGCAGCAGGAGAAAGCCCATAT... | 30 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - |
| ......................................................................................................................................................................................................AGGTGCAAACGGAGGTTCTTCAGAAGAGGCAG.................... | 32 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - |
| .............................................................................................................................................................................................................AACGGAGGTTCTTCAGAAGAGG....................... | 22 | 1 | 1.00 | 1.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .......................................................................................................................................................................................................GGTGCAAACGGAGGTTCTTCAGA............................ | 23 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - |
| ....................................................................................................................................................................................................................GTTCTTCAGAAGAGGCAG.................... | 18 | 2 | 0.50 | 0.50 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 0.50 | - |
| ...............................................................................................................................................................................................................................GAGGCAGCAGGAGAAAGC......... | 18 | 3 | 0.33 | 0.33 | - | - | - | - | - | - | - | - | - | 0.33 | - | - | - | - | - | - | - | - | - | - | - | - |
| ..........................................................................................................................................................GTAATGGTATGGAATGG............................................................................... | 17 | 8 | 0.12 | 0.12 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 0.12 |
| ATTGTTATGAGACAGATATATCTTCATCTATGAAGAATATACCTAGATCTGAGAATATACTTAGAGTCCCTAACACAGTTTTTGGCACGTAGTAAATGTCAGAGGGTAGTGGTATTAATCATGGTGTTGCTATTAAGACAATGTAGACACTGGAGTAATGGTATGGAATGGCTGTAACGGTCCTTGTGTTCATATCACAGGTGCAAACGGAGGTTCTTCAGAAGAGGCAGCAGGAGAAAGCCCATATGAT ................................................................................................((((....((((((..(((((....)))))..))))))..)))).....(((..((.(((.((........)).))).))...))).................................................................... .........................................................................................90............................................................................................184................................................................ | Size | Perfect hit | Total Norm | Perfect Norm | DRR001485(DRX001039) "Hela long total cell fraction, LNA(+)". (hela) | DRR001486(DRX001040) "Hela long cytoplasmic cell fraction, LNA(+)". (hela) | SRR039622(GSM531985) HCV(+) Adjacent Tissue Sample. (liver) | DRR001488(DRX001042) "Hela short nuclear cell fraction, LNA(+)". (hela) | SRR330906(SRX091744) tissue: normal skindisease state: normal. (skin) | SRR189787 | SRR189782 | SRR037937(GSM510475) 293cand2. (cell line) | SRR189785 | SRR330902(SRX091740) tissue: skin psoriatic uninvolveddisease stat. (skin) | SRR037936(GSM510474) 293cand1. (cell line) | SRR553572(SRX182778) source: Frontal Cortex. (Frontal Cortex) | SRR189780(GSM714640) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | DRR001489(DRX001043) "Hela short nuclear cell fraction, control". (hela) | GSM1105750AGO3(GSM1105750) small RNA sequencing data. (ago3 hela) | SRR107296(GSM677703) 18-30nt fraction of small RNA. (cell line) | GSM450605(GSM450605) miRNA sequencing raw reads from post-mortem s. (brain) | SRR326280(GSM769510) total cell content of unperturbed cells was s. (cell line) | SRR330866(SRX091704) tissue: skin psoriatic involveddisease state:. (skin) | SRR039623(GSM531986) HCV(+) HCC Tissue Sample. (liver) | SRR330874(SRX091712) tissue: skin psoriatic involveddisease state:. (skin) | SRR207115(GSM721077) XRN1&2 knockdown. (XRN1/XRN2 cell line) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| .................................................................................................................................................................................................................GAGGTTCTTCAGAAGATGC...................... | 19 | 3.00 | 0.00 | - | - | - | - | - | - | 1.00 | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ....................................................................................................................AATCATGGTGTTGCTATACA.................................................................................................................. | 20 | 2.00 | 0.00 | - | - | - | - | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...............................................................................................................................................................................................ATATCACAGGTGCAACCG......................................... | 18 | 1.00 | 0.00 | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |