ID: uc001cik.2_intron_5_0_chr1_43395707_r.3p
GENE: SLC2A1(4)
chr1:43395657-43395906-


(2)
AGO1.ip 		(2)
AGO2.ip 		(2)
B-CELL 		(1)
BRAIN 		(6)
BREAST 		(19)
CELL-LINE 		(4)
CERVIX 		(1)
FIBROBLAST 		(1)
HELA 		(2)
LIVER 		(2)
OTHER 		(32)
SKIN 		(1)
XRN.ip

Sense strand
AACACTGTGGGGTAGGTCCTACTTTTCCCATGTGACCGATGAGGAAACTGAGAAACAGGGCTCATGCTAGTGGCAGAGCCTCTAGAACTGGGGCCCTTCCCTGAAGCAGCAGCTGACACAAAGTAGGGAAGGCCACTCTGGCAGGACGGGGTGGGAAAGGGGGTCAGGGCAGAGGCGCTCACGGCCCCTGCTTCCCCCAGGTGTTCGGCCTGGACTCCATCATGGGCAACAAGGACCTGTGGCCCCTGCT
.............................................................................................................................((((((.((((((((......))))))))....(((((((.((((......))))..))))))).))))))......................................................
..........................................................................................................................123..........................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR040028(GSM532913)
G026N. (cervix)		SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR037935(GSM510473)
293cand3. (cell line)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)		SRR189782SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)		DRR000561(DRX000319)
Isolation of RNA following immunoprecipitatio. (ago2 cell line)		SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)		SRR040010(GSM532895)
G529N. (cervix)		SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR029129(GSM416758)
SW480. (cell line)		DRR001484(DRX001038)
"Hela long nuclear cell fraction, control". (hela)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR029128(GSM416757)
H520. (cell line)		SRR040008(GSM532893)
G727N. (cervix)		SRR040025(GSM532910)
G613T. (cervix)		SRR191551(GSM715661)
32genomic small RNA (size selected RNA from t. (breast)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)		TAX577579(Rovira)
total RNA. (breast)		SRR029130(GSM416759)
DLD2. (cell line)		SRR189786SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577589(Rovira)
total RNA. (breast)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)		SRR191601(GSM715711)
58genomic small RNA (size selected RNA from t. (breast)		DRR000560(DRX000318)
Isolation of RNA following immunoprecipitatio. (ago1 cell line)		SRR191562(GSM715672)
82genomic small RNA (size selected RNA from t. (breast)		SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039637(GSM518474)
THP1_total_sRNAs. (cell line)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		TAX577743(Rovira)
total RNA. (breast)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR363675(GSM830252)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
..................................................................................................................................................................................TCACGGCCCCTGCTTCCCCCAGA.................................................23132.005.001.005.00--3.00-1.00---1.002.001.00-2.00----2.00--2.00-1.00-----1.00-1.00-1.00-1.00--1.00-----1.00--------1.00-1.00---1.00-1.001.00--------
..................................................................................................................................................................................TCACGGCCCCTGCTTCCCCCAGT.................................................23116.005.002.00--4.00--1.00--3.00------1.00------1.00-------1.00------1.00---------1.00----------------1.00------
...................................................................................................................................................................................CACGGCCCCTGCTTCCCCCAGA.................................................2219.003.00-3.00-----1.00--1.00----------1.00-1.001.001.00----------------------------------------------
..................................................................................................................................................................................TCACGGCCCCTGCTTCCCCCAGC.................................................2315.005.00-4.00-------------------------------------------------1.00--------------------
..................................................................................................................................................................................TCACGGCCCCTGCTTCCCCCAG..................................................2215.005.001.00---------1.00---------1.00--------------------------1.00-------------1.00----------
..................................................................................................................................................................................TCACGGCCCCTGCTTCCCCCA...................................................2115.005.00------1.00------------------1.00--------------------------1.001.00-------------1.00----
....................................................................................................................................................................................ACGGCCCCTGCTTCCCCCAGA.................................................214.000.001.00---1.00----------1.00-------------------------------------------1.00------------
...................................................................................................................................................................................CACGGCCCCTGCTTCCCCCAG..................................................2113.003.00--1.00--------------------------1.00-------------------1.00----------------------
..................................................................................................................................................................................TCACGGCCCCTGCTTCCCCCCGT.................................................233.000.003.00-----------------------------------------------------------------------
....................................................................................................................................................................................ACGGCCCCTGCTTCCCCCAGT.................................................212.000.00-----------------2.00------------------------------------------------------
....................................................................................................................................................................................................................................ACAAGGACCTGTGGCCCCTGCT2211.001.00-----1.00------------------------------------------------------------------
.......................................................................................................................................................................................................................TCCATCATGGGCAACAAGGACCTGT..........2511.001.00--1.00---------------------------------------------------------------------
...........................................................................................................................................................................................................TTCGGCCTGGACTCCATCATGGGCAACAAGGA...............3211.001.00-------------1.00----------------------------------------------------------
..................................................................................................................................................................................................................TGGACTCCATCATGGGCAACAA..................2211.001.00---------------------1.00--------------------------------------------------
...............................................................................................................................GAAGGCCACTCTGGCAGGACGG.....................................................................................................2211.001.00-------------1.00----------------------------------------------------------
..................................................................................................................................................................................TCACGGCCCCTGCTTCCCC.....................................................1911.001.00------------------------------------------1.00-----------------------------
...................................................................................................................................................................................CACGGCCCCTGCTTCCCCCCGCT................................................231.000.001.00-----------------------------------------------------------------------
..................................ACCGATGAGGAAACTGAGAAACAGGGCTCATGCTAGTGGCAGAGCCTCTAGAACTGGGGCCCTTCCCTGAAGCAGCAGCTGACA....................................................................................................................................8411.001.00-------------------------------------1.00----------------------------------
..........................................................................................................................................TGGCAGGACGGGGTGGTC..............................................................................................181.000.00----------------------------------------------1.00-------------------------
...................................................................................................................................................................................CACGGCCCCTGCTTCCCCCA...................................................2011.001.00--------1.00---------------------------------------------------------------
..............................................................................................CCTTCCCTGAAGCAGCAGCTG.......................................................................................................................................2111.001.00----------------------------------------------------------------1.00-------
...................................................................................................................................................................................CACGGCCCCTGCTTCCCCCAGAT................................................2311.003.001.00-----------------------------------------------------------------------
..................................................................................................................................................................................TCACGGCCCCTGCTTCCCCAAGA.................................................2311.001.00----------------------------1.00-------------------------------------------
...........................................................................................................................................................................................................................TCATGGGCAACAAGGACCTGTGGC.......2411.001.00--1.00---------------------------------------------------------------------
..................................................................................................................................................................................................................TGGACTCCATCATGGGCAACAAGGACC.............2711.001.00--1.00---------------------------------------------------------------------
.................................................................................................................................................................................................................................GCAACAAGGACCTGTGGCC......1911.001.00-----------------------------------------1.00------------------------------
......................................................................................................................................................................................................................CTCCATCATGGGCAACAAGGAC..............2211.001.00---------------------------1.00--------------------------------------------
...............................................................................................................................GAAGGCCACTCTGGCAGGACGGGG...................................................................................................2411.001.00-----1.00------------------------------------------------------------------
..................................................................................................................................................................................................................................CAACAAGGACCTGTGGCCC.....1911.001.00---------------1.00--------------------------------------------------------
....................................................................................................................................................GGGTGGGAAAGGGGGTCAGGGC................................................................................2211.001.00--------------------------------------------------1.00---------------------
.......................................................................................................................................................................................................................................AGGACCTGTGGCCCCTGC.1811.001.00--------------------------------------------1.00---------------------------
..................................................................................................................................................................................TCACGGCCCCTGCTTCCCCCCTT.................................................231.000.001.00-----------------------------------------------------------------------
...................................................................................................................................................................................CACGGCCCCTGCTTCCCCCAGAGT...............................................2411.003.00--------------------1.00---------------------------------------------------
...................................................................................................................................................................................................................................AACAAGGACCTGTGGCC......1711.001.00------------------------------------------------------------------1.00-----
......................................................................................................................................................................................................................................AAGGACCTGTGGCCCCTG..1811.001.001.00-----------------------------------------------------------------------
...................................................................................................................................................................................CACGGCCCCTGCTTCCCCCAGT.................................................2211.003.00-----------1.00------------------------------------------------------------
.........................................AGGAAACTGAGAAACATACA.............................................................................................................................................................................................201.000.00--1.00---------------------------------------------------------------------
.....................................................................................................................ACAAAGTAGGGAAGGGGAG..................................................................................................................191.000.00----------------------------------------------------------1.00-------------
..................................................................................................................................................................................TCACGGCCCCTGCTTCCCCCCGA.................................................231.000.00---------------------------------1.00--------------------------------------
.................................................................................................................................................................................................................CTGGACTCCATCATGGGC.......................1811.001.00----------------------------------------1.00-------------------------------
...................................................................................................................................................................................................................GGACTCCATCATGGGCAACAAGGACCTGTGG........3111.001.00-----1.00------------------------------------------------------------------
.........................................................................................................................................................................................................................CATCATGGGCAACAAGGACCTG...........2211.001.00-------1.00----------------------------------------------------------------
.....................................GATGAGGAAACTGAGAAACAGGGCT............................................................................................................................................................................................2511.001.00------------1.00-----------------------------------------------------------
...............................................................................................................................................GGACGGGGTGGGAAACGG.........................................................................................181.000.00--------1.00---------------------------------------------------------------
...................................................................................................................................................................................CACGGCCCCTGCTTCCCCCAGAA................................................2311.003.00-------------------------------------------------------1.00----------------
...........................................................................................................................................................AAAGGGGGTCAGGGCAGAGGCGCTCACGGC.................................................................3011.001.00-----------------------------------1.00------------------------------------
........................................................................................................................AAGTAGGGAAGGCCACTCTGGCA...........................................................................................................2311.001.00---------------------------------------------------------1.00--------------
.........................................AGGAAACTGAGAAACAGGAC.............................................................................................................................................................................................201.000.00------------------1.00-----------------------------------------------------
....................................................................................................................................................................................................................................ACAAGGACCTGTGGCC......1611.001.00------------------1.00-----------------------------------------------------
..................................................................................................................................................................................TCACGGCCCCTGCTTCCCCCAGAG................................................2411.005.00-------1.00----------------------------------------------------------------
............................................................................................................................................GCAGGACGGGGTGGGAAAGGGGGTCAGG..................................................................................2811.001.00--------------------------1.00---------------------------------------------
..................................................................................................................................................................................TCACGGCCCCTGCTTCCCCCACC.................................................2311.005.001.00-----------------------------------------------------------------------
........................................................................................................................................................GGGAAAGGGGGTCAGGGCT...............................................................................191.000.00----------------1.00-------------------------------------------------------
..................................................................................................................................................................................................................................CAACAAGGACCTGTGG........1640.500.50-----0.25------0.25-----------------------------------------------------------
.............................................................................................................................................................................................................................ATGGGCAACAAGGACC.............1620.500.50--------------------------------------------------------------------0.50---
..................................ACCGATGAGGAAACTGAGA.....................................................................................................................................................................................................1920.500.50----------------------------------------------------------------------0.50-
...............................................................................................................................................................................................................................GGGCAACAAGGACCTGTGG........1920.500.50---------------------------------------------------------------------0.50--
........................................................................................................................................................................................................GTGTTCGGCCTGGACT..................................1620.500.50--------------------------0.50---------------------------------------------
....................................................................................................................................................................................................................................ACAAGGACCTGTGGC.......1550.200.20---------------------------0.20--------------------------------------------
...................................................................................................................................................................................................................................AACAAGGACCTGTGG........1590.110.11-------------0.11----------------------------------------------------------

Antisense strand
AACACTGTGGGGTAGGTCCTACTTTTCCCATGTGACCGATGAGGAAACTGAGAAACAGGGCTCATGCTAGTGGCAGAGCCTCTAGAACTGGGGCCCTTCCCTGAAGCAGCAGCTGACACAAAGTAGGGAAGGCCACTCTGGCAGGACGGGGTGGGAAAGGGGGTCAGGGCAGAGGCGCTCACGGCCCCTGCTTCCCCCAGGTGTTCGGCCTGGACTCCATCATGGGCAACAAGGACCTGTGGCCCCTGCT
.............................................................................................................................((((((.((((((((......))))))))....(((((((.((((......))))..))))))).))))))......................................................
..........................................................................................................................123..........................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR040028(GSM532913)
G026N. (cervix)		SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR037935(GSM510473)
293cand3. (cell line)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)		SRR189782SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)		DRR000561(DRX000319)
Isolation of RNA following immunoprecipitatio. (ago2 cell line)		SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)		SRR040010(GSM532895)
G529N. (cervix)		SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR029129(GSM416758)
SW480. (cell line)		DRR001484(DRX001038)
"Hela long nuclear cell fraction, control". (hela)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR029128(GSM416757)
H520. (cell line)		SRR040008(GSM532893)
G727N. (cervix)		SRR040025(GSM532910)
G613T. (cervix)		SRR191551(GSM715661)
32genomic small RNA (size selected RNA from t. (breast)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)		TAX577579(Rovira)
total RNA. (breast)		SRR029130(GSM416759)
DLD2. (cell line)		SRR189786SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577589(Rovira)
total RNA. (breast)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)		SRR191601(GSM715711)
58genomic small RNA (size selected RNA from t. (breast)		DRR000560(DRX000318)
Isolation of RNA following immunoprecipitatio. (ago1 cell line)		SRR191562(GSM715672)
82genomic small RNA (size selected RNA from t. (breast)		SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039637(GSM518474)
THP1_total_sRNAs. (cell line)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		TAX577743(Rovira)
total RNA. (breast)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR363675(GSM830252)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
..............................................................................................................................................................GGGGGTCAGGGCAGAGGGCC........................................................................ 201.000.00-------------------------------------------1.00----------------------------
....................ACTTTTCCCATGTGACTGTG.................................................................................................................................................................................................................. 201.000.00--------1.00---------------------------------------------------------------
.....AGGACCTACCCCACA...................................................................................................................................................................................................................................... 1550.200.20-----------------------------------------------------------------------0.20